Factsheet for Solyc01g103080.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400053368	Potato	nucleus	98.49	98.39
HORVU1Hr1G048420.1	Barley	cytosol	7.77	93.9
VIT_06s0009g01750.t01	Wine grape	cytosol	83.35	82.85
KRH46878	Soybean	nucleus	78.71	79.51
Os12t0279000-01	Rice	mitochondrion	61.55	78.61
EER87693	Sorghum	cytosol	79.11	78.32
Bra035425.1-P	Field mustard	nucleus	29.87	78.31
CDY45149	Canola	nucleus	29.87	78.31
Zm00001d045590_P005	Maize	cytosol, nucleus, plastid	78.71	78.0
TraesCS7D01G010500.1	Wheat	cytosol	77.7	77.94
TraesCS4A01G484300.2	Wheat	cytosol	77.7	77.39
AT1G59760.1	Thale cress	cytosol, nucleus, plastid	76.89	77.13
Bra027835.1-P	Field mustard	nucleus	74.27	76.99
GSMUA_Achr2P17890_001	Banana	cytosol, nucleus, plastid	78.3	76.68
CDY30903	Canola	nucleus	75.98	76.29
CDY45148	Canola	endoplasmic reticulum	47.53	75.72
CDY65064	Canola	nucleus	75.48	75.48
Bra035426.1-P	Field mustard	cytosol, golgi, plastid	46.92	75.0
HORVU7Hr1G001080.1	Barley	cytosol, nucleus, plastid	77.3	73.58
TraesCS7A01G010800.1	Wheat	cytosol	77.09	71.74
HORVU1Hr1G018080.31	Barley	cytosol, nucleus, plastid	18.67	63.36
CDY33604	Canola	cytosol	17.36	58.5
Solyc05g047520.2.1	Tomato	nucleus	45.01	47.65
Solyc12g017860.1.1	Tomato	nucleus	44.6	47.02
Solyc06g005990.2.1	Tomato	cytosol	34.51	25.13
Solyc05g006530.2.1	Tomato	nucleus	24.92	21.4
Solyc02g086580.2.1	Tomato	cytosol	14.53	11.96
Solyc06g071620.2.1	Tomato	nucleus	18.37	9.04
Solyc06g082100.2.1	Tomato	nucleus	17.46	8.8
Solyc06g069480.2.1	Tomato	nucleus	18.16	8.62
Solyc08g068120.1.1	Tomato	cytosol, nucleus, plastid	12.01	8.2
Solyc08g068110.1.1	Tomato	nucleus	4.04	5.67
Solyc06g065300.2.1	Tomato	cytosol	3.73	5.61

Protein Annotations

Gene3D:1.10.3380.30	Gene3D:1.20.1500.20	MapMan:16.8.1.2.3.1	Gene3D:2.40.30.300	Gene3D:3.40.50.300	ncoils:Coil
InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0000460	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003724	GO:GO:0003824	GO:GO:0004004	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006401	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	UniProt:K4B1N4	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
PFAM:PF08148	PFAM:PF13234	PIRSF:PIRSF005198	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR12131
PANTHER:PTHR12131:SF7	SMART:SM00487	SMART:SM00490	SMART:SM01142	SUPFAM:SSF52540	InterPro:Ski2-like
InterPro:Ski2_C	EnsemblPlantsGene:Solyc01g103080.2	EnsemblPlants:Solyc01g103080.2.1	UniParc:UPI0002768042	InterPro:rRNA_proc-arch_dom	SEG:seg

Description

No Description!

Coordinates

chr1:-:91746043..91754243

Molecular Weight (calculated)

112562.0 Da

IEP (calculated)

6.069

GRAVY (calculated)

-0.318

Length

991 amino acids

Sequence
(BLAST)

001: MGSFKRKSQE FSNEDDIPPS KQLKQNDLLG ADEPVTCLHD VSYPEGYVPS ASTSGLPQQD SKPAKEFPFP LDPFQSEAIN CINNGESVMV SAHTSAGKTV
101: VALYAIALSL KNNQRVVYTS PIKALSNQKY REFKEEFSDV GLMTGDVTID PNASCLVMTT EIWRSMQYKG SEVTREVAWV IFDEVHYMRD RERGVVWEES
201: IVMAPKNSNF VFLSATVPNA KEFADWVAKV HQQPCHIVYT DYRPTPLQHY IFPSGGDGLY LVVDDKGKFR EDSFQKALNA LVPANEGDKK RENSKWQKGL
301: VVGKSGENSD IFKMVKMIIQ RQYDPVICFS FSKRECEFLA MQMSKMDLNN DDEKVNIETI FWSAMDMLSD DDKKLPQVSN MLPLLKRGIG VHHSGLLPIL
401: KEVIEILFQE GFIKCLFATE TFSIGLNMPA KTVVFTNVRK FDGDKFRWLS SGEYIQMSGR AGRRGIDDRG ICILMVDEKL EPSTAKFMLK GSADALNSAF
501: HLSYNMLLNQ IRSEDGHPEN LLRNSFYQFQ ADRALPDLEK QAKILEEERN SIVIEEEDSL ERYYNLLEQY KSLKRDVRGI VFSPKYCLPF LQPGRLVCIE
601: CTKVDVDPNF SLSEEVTWGV IVNFERVKGI SEDDANKKPE DANYTVDVLT RCIVQKDEVG RKTIKVVRLK DAGEPAVVSL PLSQIDSLSS VRLVIPKDLL
701: PSEVRENALK KVSEVLNRFS KEGMPLLHPE DDMKVQSSSY RKASSRIEAL ESLFEEYEIA KSPLIKEKLK VLHKKKELTS KIKSIKRTLR TSTVLAFKDE
801: LKARKRALRR LGYIKDDVVL QKGKVASEIS SADELTLTEL MLNGTFRNIK VEDMVSLLSC FVWQEKLQDA QKPREELGLL FAQLQDTAQQ VAKVQLESKV
901: QIDVENFVSS FRPDIMEAVY AWAKGSKFYE IMEMTPVFEG SLIRAIRRLE EVLQQLIQAA KSIGDIVLEA KFEEAVTKIK RDIVFAASLY L

Best Arabidopsis Sequence Match ( AT1G59760.1 )
(BLAST)

001: MGSVKRKSVE ESSDSAPPQK VQREDDSTQI INEELVGCVH DVSFPENYVP LAPSVHNKPP AKDFPFTLDS FQSEAIKCLD NGESVMVSAH TSAGKTVVAS
101: YAIAMSLKEN QRVIYTSPIK ALSNQKYRDF KEEFSDVGLM TGDVTIDPNA SCLVMTTEIL RSMQYKGSEI MREVAWIIFD EVHYMRDSER GVVWEESIVM
201: APKNSRFVFL SATVPNAKEF ADWVAKVHQQ PCHIVYTDYR PTPLQHYVFP AGGNGLYLVV DEKSKFHEDS FQKSLNALVP TNESDKKRDN GKFQKGLVIG
301: KLGEESDIFK LVKMIIQRQY DPVILFSFSK KECEALAMQM SKMVLNSDDE KDAVETIFAS AIDMLSDDDK KLPQVSNILP ILKRGIGVHH SGLLPILKEV
401: IEILFQEGLI KCLFATETFS IGLNMPAKTV VFTNVRKFDG DKFRWLSSGE YIQMSGRAGR RGIDKRGICI LMVDEKMEPA VAKSMLKGSA DSLNSAFHLS
501: YNMLLNQLRC EEGDPENLLR NSFFQFQADR AIPDLEKQIK SLEEERDSLV IEEEESLKNY YNLILQYKSL KKDIREIVFT PKYCLPFLLP NRAVCLDCTN
601: DDEEPQSFSI EDQDTWGVIM KFNKVKSLSE DDDSRRPEDA NYTVDVLTRC MVSKDGVGKK KVKAVPIKER GEPVVVTVPL SQIKSLSSAI MNIPKDLVPL
701: EARENALKKV SELLSRHPDG IPLDPEVDMK IKSSSYKKTV RRLEALENLF EKHKIAKSPL ITEKLKVLQM KEELIAKIKS LKKTVRSSTA LAFKDELKAR
801: KRVLRRLGYI TSDNVVELKG KVACEISSAE ELTLTELMFS GIFKDAKVEE LVSLLSCFVW RERLPDAAKP REELDLLFIQ LQDTARRVAE VQLDCKVEID
901: VESFVQSFRP DIMEAVYAWA KGSKFYEVME IARVFEGSLI RAIRRMEEVL QQLIVAAKSI GETQLEAKLE EAVSKIKRDI VFAASLYL

Arabidopsis Description

MTR4DExH-box ATP-dependent RNA helicase DExH9 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIF2]
SUBAcon: [cytosol,nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.