Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G010500.1 | Wheat | cytosol | 91.83 | 98.99 |
| TraesCS4A01G484300.2 | Wheat | cytosol | 91.83 | 98.29 |
| HORVU7Hr1G001080.1 | Barley | cytosol, nucleus, plastid | 89.48 | 91.55 |
| Os12t0279000-01 | Rice | mitochondrion | 64.41 | 88.4 |
| EER87693 | Sorghum | cytosol | 82.72 | 88.01 |
| Zm00001d045590_P005 | Maize | cytosol, nucleus, plastid | 82.16 | 87.5 |
| GSMUA_Achr2P17890_001 | Banana | cytosol, nucleus, plastid | 74.65 | 78.56 |
| VIT_06s0009g01750.t01 | Wine grape | cytosol | 73.43 | 78.44 |
| PGSC0003DMT400053368 | Potato | nucleus | 72.11 | 77.42 |
| KRH46878 | Soybean | nucleus | 71.17 | 77.27 |
| CDY45149 | Canola | nucleus | 27.42 | 77.25 |
| Solyc01g103080.2.1 | Tomato | nucleus | 71.74 | 77.09 |
| Bra035425.1-P | Field mustard | nucleus | 27.23 | 76.72 |
| Bra027835.1-P | Field mustard | nucleus | 68.08 | 75.84 |
| AT1G59760.1 | Thale cress | cytosol, nucleus, plastid | 70.14 | 75.61 |
| CDY30903 | Canola | nucleus | 69.3 | 74.77 |
| CDY65064 | Canola | nucleus | 69.2 | 74.37 |
| CDY45148 | Canola | endoplasmic reticulum | 42.82 | 73.31 |
| Bra035426.1-P | Field mustard | cytosol, golgi, plastid | 42.54 | 73.06 |
| CDY33604 | Canola | cytosol | 15.68 | 56.8 |
| TraesCS4A01G216300.1 | Wheat | cytosol | 45.07 | 47.81 |
| TraesCS2A01G154400.1 | Wheat | cytosol | 44.88 | 47.19 |
| TraesCS6A01G133400.3 | Wheat | cytosol | 32.49 | 25.31 |
| TraesCS6A01G312100.1 | Wheat | plastid | 22.25 | 19.68 |
| TraesCS4A01G136200.1 | Wheat | nucleus | 13.05 | 10.85 |
| TraesCS4A01G057200.1 | Wheat | mitochondrion, peroxisome | 16.43 | 8.42 |
| TraesCS6A01G024900.1 | Wheat | nucleus | 17.09 | 8.36 |
| TraesCS7A01G238700.1 | Wheat | cytosol | 15.87 | 8.0 |
| TraesCS1A01G323500.1 | Wheat | plastid | 15.02 | 7.76 |
Protein Annotations
| Gene3D:1.10.3380.30 | Gene3D:1.20.1500.20 | MapMan:16.8.1.2.3.1 | Gene3D:2.40.30.300 | Gene3D:3.40.50.300 | ncoils:Coil |
| InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003724 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0006139 | GO:GO:0006401 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016787 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF08148 |
| PFAM:PF13234 | PIRSF:PIRSF005198 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR12131 | PANTHER:PTHR12131:SF7 |
| SMART:SM00487 | SMART:SM00490 | SMART:SM01142 | SUPFAM:SSF52540 | InterPro:Ski2-like | InterPro:Ski2_C |
| EnsemblPlantsGene:TraesCS7A01G010800 | EnsemblPlants:TraesCS7A01G010800.1 | TIGR:cd00046 | TIGR:cd00079 | InterPro:rRNA_proc-arch_dom | SEG:seg |
Description
No Description!
Coordinates
chr7A:+:4891028..4897792
Molecular Weight (calculated)
116886.0 Da
IEP (calculated)
7.162
GRAVY (calculated)
-0.286
Length
1065 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEASLKRKAA DAPADGPDPP LKAPRADAAP LLPAAAERVA CLHDVSYPEG YDASASGPRV VAGGGEGAAP AKTFPFPLDP FQSEAIRCLD NGESVMVSAH
0101: TSAGKTVVAL YAIAMSLRNQ QRVIYTSPIK ALSNQKYREF KEEFSDVGLM TGDVTIEPNA SCLVMTTEIW RSMQYKGSEV MREVAWVIFD EVHYMRDRER
0201: GVVWEESIVM APKNSRFVFL SATVPNAKEF ADWVAKVHKQ PCHIVYTDYR PTPLQHYVFP AGGDGLYLVV DENGKFREDS FQKSLNVLAP ATGSDKKREN
0301: GKRQKGLVSA GKTNEESDIF KMVKMIIQRQ YDPVILFSFS KRECEFLAMQ MAKMDLNGDD EKVNIETIFW SAMDLLSDDD KKLPQVSNML PLLKRGIGVH
0401: HSGLLPILKE VIEILFQEGL IKCLFATETF SIGLNMPAKT VVFTNVRKFD GDRFRWLSSG EYIQMSGRAG RRGIDLRGIC ILMVDEKMEP STAKMMLKGG
0501: ADSLNSAFHL SYNMLLNQLR SEDGDPEKLL RHSFYQFQAD RVLPDLEKQV RELEIERSSM VIEDEESVKD YYDLLQQYRT LKKDVRDIVL SPKYVLPFLQ
0601: SGRLVRVQYS TDGSTFSIDE NVSWGIIINF EKVKTNAEER RPEDCDYTVD VLTRCSVIKD ISGKKTMKVI PLKSRGEPVV ISLPLSQIDG LSSVRMYIPK
0701: DLLPVEAREN TLRKVDEVLS RFAKDGVPLL DPEEDMEVKS SSYRKAARRI EALESLFEKH DIRNAPHIQQ KLKLLHAKQE IKAKIKSIKK TMRASTALAF
0801: KDELKARKRV LRRLGYITSE DVVEIKGKVA CEISSADELT LTELMFSGTL KDATVEQMVA LLSCFVWQEK LQDAPKPREE LDLLFYQLQE TARRVANLQL
0901: ECKIQIDVES FVNSFRPDVM EAVYSWARGS KFHQIMEMTQ VFEGSLIRAI RRLEEVLQQL ILASQSIGET QLEAKLEEAV SKIKRDIVXX XXXXXXXXXX
1001: XXXXXXXXXX XXXXXXXXXY HVCCSCPAPS TWTRSGSLDW FAVTRSGMLS PWRGYNFVGC RSSKS
0101: TSAGKTVVAL YAIAMSLRNQ QRVIYTSPIK ALSNQKYREF KEEFSDVGLM TGDVTIEPNA SCLVMTTEIW RSMQYKGSEV MREVAWVIFD EVHYMRDRER
0201: GVVWEESIVM APKNSRFVFL SATVPNAKEF ADWVAKVHKQ PCHIVYTDYR PTPLQHYVFP AGGDGLYLVV DENGKFREDS FQKSLNVLAP ATGSDKKREN
0301: GKRQKGLVSA GKTNEESDIF KMVKMIIQRQ YDPVILFSFS KRECEFLAMQ MAKMDLNGDD EKVNIETIFW SAMDLLSDDD KKLPQVSNML PLLKRGIGVH
0401: HSGLLPILKE VIEILFQEGL IKCLFATETF SIGLNMPAKT VVFTNVRKFD GDRFRWLSSG EYIQMSGRAG RRGIDLRGIC ILMVDEKMEP STAKMMLKGG
0501: ADSLNSAFHL SYNMLLNQLR SEDGDPEKLL RHSFYQFQAD RVLPDLEKQV RELEIERSSM VIEDEESVKD YYDLLQQYRT LKKDVRDIVL SPKYVLPFLQ
0601: SGRLVRVQYS TDGSTFSIDE NVSWGIIINF EKVKTNAEER RPEDCDYTVD VLTRCSVIKD ISGKKTMKVI PLKSRGEPVV ISLPLSQIDG LSSVRMYIPK
0701: DLLPVEAREN TLRKVDEVLS RFAKDGVPLL DPEEDMEVKS SSYRKAARRI EALESLFEKH DIRNAPHIQQ KLKLLHAKQE IKAKIKSIKK TMRASTALAF
0801: KDELKARKRV LRRLGYITSE DVVEIKGKVA CEISSADELT LTELMFSGTL KDATVEQMVA LLSCFVWQEK LQDAPKPREE LDLLFYQLQE TARRVANLQL
0901: ECKIQIDVES FVNSFRPDVM EAVYSWARGS KFHQIMEMTQ VFEGSLIRAI RRLEEVLQQL ILASQSIGET QLEAKLEEAV SKIKRDIVXX XXXXXXXXXX
1001: XXXXXXXXXX XXXXXXXXXY HVCCSCPAPS TWTRSGSLDW FAVTRSGMLS PWRGYNFVGC RSSKS
001: MGSVKRKSVE ESSDSAPPQK VQREDDSTQI INEELVGCVH DVSFPENYVP LAPSVHNKPP AKDFPFTLDS FQSEAIKCLD NGESVMVSAH TSAGKTVVAS
101: YAIAMSLKEN QRVIYTSPIK ALSNQKYRDF KEEFSDVGLM TGDVTIDPNA SCLVMTTEIL RSMQYKGSEI MREVAWIIFD EVHYMRDSER GVVWEESIVM
201: APKNSRFVFL SATVPNAKEF ADWVAKVHQQ PCHIVYTDYR PTPLQHYVFP AGGNGLYLVV DEKSKFHEDS FQKSLNALVP TNESDKKRDN GKFQKGLVIG
301: KLGEESDIFK LVKMIIQRQY DPVILFSFSK KECEALAMQM SKMVLNSDDE KDAVETIFAS AIDMLSDDDK KLPQVSNILP ILKRGIGVHH SGLLPILKEV
401: IEILFQEGLI KCLFATETFS IGLNMPAKTV VFTNVRKFDG DKFRWLSSGE YIQMSGRAGR RGIDKRGICI LMVDEKMEPA VAKSMLKGSA DSLNSAFHLS
501: YNMLLNQLRC EEGDPENLLR NSFFQFQADR AIPDLEKQIK SLEEERDSLV IEEEESLKNY YNLILQYKSL KKDIREIVFT PKYCLPFLLP NRAVCLDCTN
601: DDEEPQSFSI EDQDTWGVIM KFNKVKSLSE DDDSRRPEDA NYTVDVLTRC MVSKDGVGKK KVKAVPIKER GEPVVVTVPL SQIKSLSSAI MNIPKDLVPL
701: EARENALKKV SELLSRHPDG IPLDPEVDMK IKSSSYKKTV RRLEALENLF EKHKIAKSPL ITEKLKVLQM KEELIAKIKS LKKTVRSSTA LAFKDELKAR
801: KRVLRRLGYI TSDNVVELKG KVACEISSAE ELTLTELMFS GIFKDAKVEE LVSLLSCFVW RERLPDAAKP REELDLLFIQ LQDTARRVAE VQLDCKVEID
901: VESFVQSFRP DIMEAVYAWA KGSKFYEVME IARVFEGSLI RAIRRMEEVL QQLIVAAKSI GETQLEAKLE EAVSKIKRDI VFAASLYL
101: YAIAMSLKEN QRVIYTSPIK ALSNQKYRDF KEEFSDVGLM TGDVTIDPNA SCLVMTTEIL RSMQYKGSEI MREVAWIIFD EVHYMRDSER GVVWEESIVM
201: APKNSRFVFL SATVPNAKEF ADWVAKVHQQ PCHIVYTDYR PTPLQHYVFP AGGNGLYLVV DEKSKFHEDS FQKSLNALVP TNESDKKRDN GKFQKGLVIG
301: KLGEESDIFK LVKMIIQRQY DPVILFSFSK KECEALAMQM SKMVLNSDDE KDAVETIFAS AIDMLSDDDK KLPQVSNILP ILKRGIGVHH SGLLPILKEV
401: IEILFQEGLI KCLFATETFS IGLNMPAKTV VFTNVRKFDG DKFRWLSSGE YIQMSGRAGR RGIDKRGICI LMVDEKMEPA VAKSMLKGSA DSLNSAFHLS
501: YNMLLNQLRC EEGDPENLLR NSFFQFQADR AIPDLEKQIK SLEEERDSLV IEEEESLKNY YNLILQYKSL KKDIREIVFT PKYCLPFLLP NRAVCLDCTN
601: DDEEPQSFSI EDQDTWGVIM KFNKVKSLSE DDDSRRPEDA NYTVDVLTRC MVSKDGVGKK KVKAVPIKER GEPVVVTVPL SQIKSLSSAI MNIPKDLVPL
701: EARENALKKV SELLSRHPDG IPLDPEVDMK IKSSSYKKTV RRLEALENLF EKHKIAKSPL ITEKLKVLQM KEELIAKIKS LKKTVRSSTA LAFKDELKAR
801: KRVLRRLGYI TSDNVVELKG KVACEISSAE ELTLTELMFS GIFKDAKVEE LVSLLSCFVW RERLPDAAKP REELDLLFIQ LQDTARRVAE VQLDCKVEID
901: VESFVQSFRP DIMEAVYAWA KGSKFYEVME IARVFEGSLI RAIRRMEEVL QQLIVAAKSI GETQLEAKLE EAVSKIKRDI VFAASLYL
Arabidopsis Description
MTR4DExH-box ATP-dependent RNA helicase DExH9 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIF2]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.