Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- cytosol 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G048420.1 | Barley | cytosol | 7.78 | 98.78 |
| TraesCS7D01G010500.1 | Wheat | cytosol | 92.03 | 96.96 |
| TraesCS4A01G484300.2 | Wheat | cytosol | 92.12 | 96.38 |
| TraesCS7A01G010800.1 | Wheat | cytosol | 91.55 | 89.48 |
| EER87693 | Sorghum | cytosol | 84.63 | 88.01 |
| Os12t0279000-01 | Rice | mitochondrion | 65.51 | 87.89 |
| Zm00001d045590_P005 | Maize | cytosol, nucleus, plastid | 83.67 | 87.1 |
| VIT_06s0009g01750.t01 | Wine grape | cytosol | 75.22 | 78.54 |
| GSMUA_Achr2P17890_001 | Banana | cytosol, nucleus, plastid | 76.27 | 78.46 |
| PGSC0003DMT400053368 | Potato | nucleus | 73.97 | 77.62 |
| KRH46878 | Soybean | nucleus | 73.01 | 77.47 |
| Solyc01g103080.2.1 | Tomato | nucleus | 73.58 | 77.3 |
| CDY45149 | Canola | nucleus | 28.05 | 77.25 |
| Bra035425.1-P | Field mustard | nucleus | 27.86 | 76.72 |
| Bra027835.1-P | Field mustard | nucleus | 69.45 | 75.63 |
| AT1G59760.1 | Thale cress | cytosol, nucleus, plastid | 71.76 | 75.61 |
| CDY30903 | Canola | nucleus | 70.7 | 74.57 |
| CDY65064 | Canola | nucleus | 70.61 | 74.17 |
| CDY45148 | Canola | endoplasmic reticulum | 43.71 | 73.15 |
| Bra035426.1-P | Field mustard | cytosol, golgi, plastid | 43.42 | 72.9 |
| HORVU1Hr1G018080.31 | Barley | cytosol, nucleus, plastid | 20.17 | 71.92 |
| CDY33604 | Canola | cytosol | 15.95 | 56.46 |
| HORVU2Hr1G028060.7 | Barley | cytosol | 46.01 | 47.61 |
| HORVU4Hr1G018990.9 | Barley | plastid | 46.21 | 46.38 |
| HORVU6Hr1G025670.1 | Barley | nucleus | 34.01 | 25.9 |
| HORVU6Hr1G076860.2 | Barley | plastid | 22.77 | 19.82 |
| HORVU4Hr1G049830.57 | Barley | nucleus | 13.45 | 12.48 |
| HORVU4Hr1G068170.2 | Barley | cytosol, nucleus | 17.1 | 8.52 |
| HORVU1Hr1G065680.1 | Barley | nucleus | 13.74 | 8.44 |
| HORVU6Hr1G004350.3 | Barley | cytosol, mitochondrion, nucleus | 17.39 | 8.26 |
| HORVU7Hr1G040480.2 | Barley | cytosol, mitochondrion | 16.91 | 8.19 |
| HORVU0Hr1G026710.1 | Barley | plastid | 14.12 | 7.62 |
Protein Annotations
| Gene3D:1.10.3380.30 | Gene3D:1.20.1500.20 | MapMan:16.8.1.2.3.1 | Gene3D:2.40.30.300 | Gene3D:3.40.50.300 | UniProt:A0A287VC97 |
| ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003724 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006364 | GO:GO:0006401 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0031125 |
| EnsemblPlantsGene:HORVU7Hr1G001080 | EnsemblPlants:HORVU7Hr1G001080.1 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF08148 | PFAM:PF13234 | PIRSF:PIRSF005198 |
| PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR12131 | PANTHER:PTHR12131:SF7 | SMART:SM00487 | SMART:SM00490 |
| SMART:SM01142 | SUPFAM:SSF52540 | InterPro:Ski2-like | InterPro:Ski2_C | UniParc:UPI000B46D724 | InterPro:rRNA_proc-arch_dom |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr7H:+:2445509..2454367
Molecular Weight (calculated)
117424.0 Da
IEP (calculated)
6.347
GRAVY (calculated)
-0.326
Length
1041 amino acids
Sequence
(BLAST)
(BLAST)
0001: APYAETAHRQ TNGQLSFFPA GDQTISLPSL NPSPPPPPPP PAVHRAMEAT LKRKATEDAP AAGVDPPIKP PRADADAAPA GTERVACVHD VSYPEGYDAS
0101: APGPRIVAGG GEGAAPAKTF PFPLDPFQSE AIRCLDNGES VMVSAHTSAG KTVVALYAIA MSLRNQQRVI YTSPIKALSN QKYREFKEEF SDVGLMTGDV
0201: TIEPNASCLV MTTEIWRSMQ YKGSEVMREV AWVIFDEVHY MRDRERGVVW EESIVMAPKN SRFVFLSATV PNAKEFADWV AKVHKQPCHI VYTDYRPTPL
0301: QHYVFPAGGD GLYLVVDENG KFREDSFQKS LNVLAPASGN DKKRENGKRQ KGVVSAGKTN EESDIFKMVK MIIQRQYDPV ILFSFSKREC EFLAMQMAKM
0401: DLNGDDEKVN IETIFWSAMD LLSDDDKKLP QVSNMLPLLK RGIGVHHSGL LPILKEVIEI LFQEGLIKCL FATETFSIGL NMPAKTVVFT NVRKFDGDRF
0501: RWLSSGEYIQ MSGRAGRRGI DQRGVCILMV DEKMEPSTAK MMLKGGADSL NSAFHLSYNM LLNQLRSEDG DPEKLLRHSF YQFQADRALP DLEKQVRELE
0601: VERSSMVIED EESVKDYYDL LQQYRTLKQD VRDIVLSPKY VLPFLQSGRL VRVQYTTDES TFSIDESVSW GIIINFEKVK TNAEERKPED CDYTVDVLTR
0701: CSVIKDVNGK KAMKVIPLKS RGEPVVISLP LSQIDGLSSV RMYIPKDLLP VEARENTLRK IEEVLSRFAK DGVPLLDPEE DMEVKSSSYR KATRRIEALE
0801: SLFEKHDIRN APHIQQKLKV LHAKQEIKAK IKSIKKTMQA STSLAFKDEL KARKRVLRRL GYITNEDVVE IKGKVACEIS SADELTLTEL MFSGTLKDAT
0901: VEQMVALLSC FVWQEKLQDA PKPREELDLL FYQLQETARR VANLQLECKI QIDVESFVNS FRPDVMEAVY SWARGSKFHQ IMEMTQVFEG SLIRAIRRLE
1001: EVLQQLILAS QSIGETQLEA KLEEAVSKIK RDIVFAASLY L
0101: APGPRIVAGG GEGAAPAKTF PFPLDPFQSE AIRCLDNGES VMVSAHTSAG KTVVALYAIA MSLRNQQRVI YTSPIKALSN QKYREFKEEF SDVGLMTGDV
0201: TIEPNASCLV MTTEIWRSMQ YKGSEVMREV AWVIFDEVHY MRDRERGVVW EESIVMAPKN SRFVFLSATV PNAKEFADWV AKVHKQPCHI VYTDYRPTPL
0301: QHYVFPAGGD GLYLVVDENG KFREDSFQKS LNVLAPASGN DKKRENGKRQ KGVVSAGKTN EESDIFKMVK MIIQRQYDPV ILFSFSKREC EFLAMQMAKM
0401: DLNGDDEKVN IETIFWSAMD LLSDDDKKLP QVSNMLPLLK RGIGVHHSGL LPILKEVIEI LFQEGLIKCL FATETFSIGL NMPAKTVVFT NVRKFDGDRF
0501: RWLSSGEYIQ MSGRAGRRGI DQRGVCILMV DEKMEPSTAK MMLKGGADSL NSAFHLSYNM LLNQLRSEDG DPEKLLRHSF YQFQADRALP DLEKQVRELE
0601: VERSSMVIED EESVKDYYDL LQQYRTLKQD VRDIVLSPKY VLPFLQSGRL VRVQYTTDES TFSIDESVSW GIIINFEKVK TNAEERKPED CDYTVDVLTR
0701: CSVIKDVNGK KAMKVIPLKS RGEPVVISLP LSQIDGLSSV RMYIPKDLLP VEARENTLRK IEEVLSRFAK DGVPLLDPEE DMEVKSSSYR KATRRIEALE
0801: SLFEKHDIRN APHIQQKLKV LHAKQEIKAK IKSIKKTMQA STSLAFKDEL KARKRVLRRL GYITNEDVVE IKGKVACEIS SADELTLTEL MFSGTLKDAT
0901: VEQMVALLSC FVWQEKLQDA PKPREELDLL FYQLQETARR VANLQLECKI QIDVESFVNS FRPDVMEAVY SWARGSKFHQ IMEMTQVFEG SLIRAIRRLE
1001: EVLQQLILAS QSIGETQLEA KLEEAVSKIK RDIVFAASLY L
001: MGSVKRKSVE ESSDSAPPQK VQREDDSTQI INEELVGCVH DVSFPENYVP LAPSVHNKPP AKDFPFTLDS FQSEAIKCLD NGESVMVSAH TSAGKTVVAS
101: YAIAMSLKEN QRVIYTSPIK ALSNQKYRDF KEEFSDVGLM TGDVTIDPNA SCLVMTTEIL RSMQYKGSEI MREVAWIIFD EVHYMRDSER GVVWEESIVM
201: APKNSRFVFL SATVPNAKEF ADWVAKVHQQ PCHIVYTDYR PTPLQHYVFP AGGNGLYLVV DEKSKFHEDS FQKSLNALVP TNESDKKRDN GKFQKGLVIG
301: KLGEESDIFK LVKMIIQRQY DPVILFSFSK KECEALAMQM SKMVLNSDDE KDAVETIFAS AIDMLSDDDK KLPQVSNILP ILKRGIGVHH SGLLPILKEV
401: IEILFQEGLI KCLFATETFS IGLNMPAKTV VFTNVRKFDG DKFRWLSSGE YIQMSGRAGR RGIDKRGICI LMVDEKMEPA VAKSMLKGSA DSLNSAFHLS
501: YNMLLNQLRC EEGDPENLLR NSFFQFQADR AIPDLEKQIK SLEEERDSLV IEEEESLKNY YNLILQYKSL KKDIREIVFT PKYCLPFLLP NRAVCLDCTN
601: DDEEPQSFSI EDQDTWGVIM KFNKVKSLSE DDDSRRPEDA NYTVDVLTRC MVSKDGVGKK KVKAVPIKER GEPVVVTVPL SQIKSLSSAI MNIPKDLVPL
701: EARENALKKV SELLSRHPDG IPLDPEVDMK IKSSSYKKTV RRLEALENLF EKHKIAKSPL ITEKLKVLQM KEELIAKIKS LKKTVRSSTA LAFKDELKAR
801: KRVLRRLGYI TSDNVVELKG KVACEISSAE ELTLTELMFS GIFKDAKVEE LVSLLSCFVW RERLPDAAKP REELDLLFIQ LQDTARRVAE VQLDCKVEID
901: VESFVQSFRP DIMEAVYAWA KGSKFYEVME IARVFEGSLI RAIRRMEEVL QQLIVAAKSI GETQLEAKLE EAVSKIKRDI VFAASLYL
101: YAIAMSLKEN QRVIYTSPIK ALSNQKYRDF KEEFSDVGLM TGDVTIDPNA SCLVMTTEIL RSMQYKGSEI MREVAWIIFD EVHYMRDSER GVVWEESIVM
201: APKNSRFVFL SATVPNAKEF ADWVAKVHQQ PCHIVYTDYR PTPLQHYVFP AGGNGLYLVV DEKSKFHEDS FQKSLNALVP TNESDKKRDN GKFQKGLVIG
301: KLGEESDIFK LVKMIIQRQY DPVILFSFSK KECEALAMQM SKMVLNSDDE KDAVETIFAS AIDMLSDDDK KLPQVSNILP ILKRGIGVHH SGLLPILKEV
401: IEILFQEGLI KCLFATETFS IGLNMPAKTV VFTNVRKFDG DKFRWLSSGE YIQMSGRAGR RGIDKRGICI LMVDEKMEPA VAKSMLKGSA DSLNSAFHLS
501: YNMLLNQLRC EEGDPENLLR NSFFQFQADR AIPDLEKQIK SLEEERDSLV IEEEESLKNY YNLILQYKSL KKDIREIVFT PKYCLPFLLP NRAVCLDCTN
601: DDEEPQSFSI EDQDTWGVIM KFNKVKSLSE DDDSRRPEDA NYTVDVLTRC MVSKDGVGKK KVKAVPIKER GEPVVVTVPL SQIKSLSSAI MNIPKDLVPL
701: EARENALKKV SELLSRHPDG IPLDPEVDMK IKSSSYKKTV RRLEALENLF EKHKIAKSPL ITEKLKVLQM KEELIAKIKS LKKTVRSSTA LAFKDELKAR
801: KRVLRRLGYI TSDNVVELKG KVACEISSAE ELTLTELMFS GIFKDAKVEE LVSLLSCFVW RERLPDAAKP REELDLLFIQ LQDTARRVAE VQLDCKVEID
901: VESFVQSFRP DIMEAVYAWA KGSKFYEVME IARVFEGSLI RAIRRMEEVL QQLIVAAKSI GETQLEAKLE EAVSKIKRDI VFAASLYL
Arabidopsis Description
MTR4DExH-box ATP-dependent RNA helicase DExH9 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIF2]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.