Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d045590_P005 | Maize | cytosol, nucleus, plastid | 96.5 | 96.6 |
| Os12t0279000-01 | Rice | mitochondrion | 69.83 | 90.08 |
| TraesCS7D01G010500.1 | Wheat | cytosol | 88.41 | 89.57 |
| TraesCS4A01G484300.2 | Wheat | cytosol | 88.51 | 89.05 |
| HORVU7Hr1G001080.1 | Barley | cytosol, nucleus, plastid | 88.01 | 84.63 |
| TraesCS7A01G010800.1 | Wheat | cytosol | 88.01 | 82.72 |
| GSMUA_Achr2P17890_001 | Banana | cytosol, nucleus, plastid | 81.82 | 80.93 |
| VIT_06s0009g01750.t01 | Wine grape | cytosol | 80.02 | 80.34 |
| KRH46878 | Soybean | nucleus | 78.72 | 80.33 |
| PGSC0003DMT400053368 | Potato | nucleus | 78.62 | 79.33 |
| Solyc01g103080.2.1 | Tomato | nucleus | 78.32 | 79.11 |
| CDY45149 | Canola | nucleus | 29.47 | 78.04 |
| Bra027835.1-P | Field mustard | nucleus | 73.83 | 77.3 |
| Bra035425.1-P | Field mustard | nucleus | 29.17 | 77.25 |
| AT1G59760.1 | Thale cress | cytosol, nucleus, plastid | 76.02 | 77.02 |
| CDY30903 | Canola | nucleus | 75.42 | 76.49 |
| CDY65064 | Canola | nucleus | 74.83 | 75.58 |
| CDY45148 | Canola | endoplasmic reticulum | 46.95 | 75.56 |
| Bra035426.1-P | Field mustard | cytosol, golgi, plastid | 46.65 | 75.32 |
| CDY33604 | Canola | cytosol | 16.88 | 57.48 |
| EES02351 | Sorghum | nucleus | 48.85 | 48.71 |
| KXG29518 | Sorghum | cytosol | 34.67 | 25.31 |
| OQU85441 | Sorghum | plastid | 24.38 | 20.5 |
| OQU85316 | Sorghum | nucleus | 13.69 | 10.58 |
| EER99779 | Sorghum | cytosol | 18.48 | 8.48 |
| EES04337 | Sorghum | cytosol | 18.38 | 8.47 |
| KXG39883 | Sorghum | mitochondrion | 17.48 | 8.4 |
| KXG37223 | Sorghum | cytosol | 17.98 | 8.17 |
| OQU79067 | Sorghum | plastid | 14.98 | 7.22 |
Protein Annotations
| Gene3D:1.10.3380.30 | Gene3D:1.20.1500.20 | MapMan:16.8.1.2.3.1 | Gene3D:2.40.30.300 | Gene3D:3.40.50.300 | UniProt:C5Z244 |
| ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | EnsemblPlants:EER87693 | ProteinID:EER87693 | ProteinID:EER87693.2 | GO:GO:0000166 |
| GO:GO:0000460 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003724 | GO:GO:0003824 |
| GO:GO:0004004 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006364 | GO:GO:0006401 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0031125 | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 |
| PFAM:PF08148 | PFAM:PF13234 | PIRSF:PIRSF005198 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR12131 |
| PANTHER:PTHR12131:SF7 | SMART:SM00487 | SMART:SM00490 | SMART:SM01142 | EnsemblPlantsGene:SORBI_3010G003400 | SUPFAM:SSF52540 |
| unigene:Sbi.20126 | InterPro:Ski2-like | InterPro:Ski2_C | UniParc:UPI0007F2B3E7 | InterPro:rRNA_proc-arch_dom | SEG:seg |
Description
hypothetical protein
Coordinates
chr10:+:294897..302843
Molecular Weight (calculated)
113568.0 Da
IEP (calculated)
6.400
GRAVY (calculated)
-0.343
Length
1001 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDTLKRKAPD GPEAADQASP LKAPRVVAPT SEPPAPTALA TAEPVACVHD VSYPEGYDAS ASTSRAIAGG ADASEPARKF PFQLDPFQSE AIRCVDNGES
0101: VMVSAHTSAG KTVVALYAIA MSLRNQQRVI YTSPIKALSN QKYREFKEEF SDVGLMTGDV TIEPNASCLV MTTEIWRSMQ YKGSEVMREV AWIIFDEVHY
0201: MRDRERGVVW EESIVMAPKN SRFVFLSATV PNAKEFADWV AKVHKQPCHI VYTDYRPTPL QHYVFPSGGD GLYLVVDEKG KFREDSFQKA LNALVPASDS
0301: AKKKENGKWQ KVIMAGKSSE ESDIFKMVKM IIQRQYDPVI LFSFSKRECE FLAMQMAKMD LNEDDEKANI ETIFWSAMDM LSDDDKKLPQ VSNMLPLLKR
0401: GIGVHHSGLL PILKEVIEIL FQEGLIKCLF ATETFSIGLN MPAKTVVFTN VRKFDGDRFR WLSSGEYIQM SGRAGRRGID QRGICILMVD EKMEPSTAKM
0501: MLKGSADSLN SAFHLSYNML LNQMRSEDGD PEKLLRHSFY QFQADRSLPD LEKQIKELES ERNSMVIEEE ESLKDYYDLL QQHRSLKKDV HDIVLSPKHV
0601: LPFLQPGRLV RIEYSTDEPA NFSIDENVTW GIIINFEKVK SHGEDRRPED SDYTVDVLTR CSVTKDNNGK KTMKVVPLKA RGEPVVVSLP LSQIDGLSSI
0701: RMYIPKDLLP VEARENTLRK VEEVLSRFAK DGVPLLDPEE DMKVQSKSFR KATRRIEALE SLFEKHDIRN SPHIQQKLKV FHAKQELSAK IKSIKKTMRS
0801: STALAFKDEL KARKRVLRRL GYVTSDDVVE VKGKVACEIS SADELTLTEL MFSGALKDAT VEQMVALLSC FVWQEKLQDA PKPREELDLL FYQLQETARR
0901: VANLQLECKI QIDVESFVNS FRPDIMEAVY SWARGSKFYQ IMEMTQVFEG SLIRAIRRLE EVLQQLILAS KSIGETELEA KLEEAVNKIK RDIVFAASLY
1001: L
0101: VMVSAHTSAG KTVVALYAIA MSLRNQQRVI YTSPIKALSN QKYREFKEEF SDVGLMTGDV TIEPNASCLV MTTEIWRSMQ YKGSEVMREV AWIIFDEVHY
0201: MRDRERGVVW EESIVMAPKN SRFVFLSATV PNAKEFADWV AKVHKQPCHI VYTDYRPTPL QHYVFPSGGD GLYLVVDEKG KFREDSFQKA LNALVPASDS
0301: AKKKENGKWQ KVIMAGKSSE ESDIFKMVKM IIQRQYDPVI LFSFSKRECE FLAMQMAKMD LNEDDEKANI ETIFWSAMDM LSDDDKKLPQ VSNMLPLLKR
0401: GIGVHHSGLL PILKEVIEIL FQEGLIKCLF ATETFSIGLN MPAKTVVFTN VRKFDGDRFR WLSSGEYIQM SGRAGRRGID QRGICILMVD EKMEPSTAKM
0501: MLKGSADSLN SAFHLSYNML LNQMRSEDGD PEKLLRHSFY QFQADRSLPD LEKQIKELES ERNSMVIEEE ESLKDYYDLL QQHRSLKKDV HDIVLSPKHV
0601: LPFLQPGRLV RIEYSTDEPA NFSIDENVTW GIIINFEKVK SHGEDRRPED SDYTVDVLTR CSVTKDNNGK KTMKVVPLKA RGEPVVVSLP LSQIDGLSSI
0701: RMYIPKDLLP VEARENTLRK VEEVLSRFAK DGVPLLDPEE DMKVQSKSFR KATRRIEALE SLFEKHDIRN SPHIQQKLKV FHAKQELSAK IKSIKKTMRS
0801: STALAFKDEL KARKRVLRRL GYVTSDDVVE VKGKVACEIS SADELTLTEL MFSGALKDAT VEQMVALLSC FVWQEKLQDA PKPREELDLL FYQLQETARR
0901: VANLQLECKI QIDVESFVNS FRPDIMEAVY SWARGSKFYQ IMEMTQVFEG SLIRAIRRLE EVLQQLILAS KSIGETELEA KLEEAVNKIK RDIVFAASLY
1001: L
001: MGSVKRKSVE ESSDSAPPQK VQREDDSTQI INEELVGCVH DVSFPENYVP LAPSVHNKPP AKDFPFTLDS FQSEAIKCLD NGESVMVSAH TSAGKTVVAS
101: YAIAMSLKEN QRVIYTSPIK ALSNQKYRDF KEEFSDVGLM TGDVTIDPNA SCLVMTTEIL RSMQYKGSEI MREVAWIIFD EVHYMRDSER GVVWEESIVM
201: APKNSRFVFL SATVPNAKEF ADWVAKVHQQ PCHIVYTDYR PTPLQHYVFP AGGNGLYLVV DEKSKFHEDS FQKSLNALVP TNESDKKRDN GKFQKGLVIG
301: KLGEESDIFK LVKMIIQRQY DPVILFSFSK KECEALAMQM SKMVLNSDDE KDAVETIFAS AIDMLSDDDK KLPQVSNILP ILKRGIGVHH SGLLPILKEV
401: IEILFQEGLI KCLFATETFS IGLNMPAKTV VFTNVRKFDG DKFRWLSSGE YIQMSGRAGR RGIDKRGICI LMVDEKMEPA VAKSMLKGSA DSLNSAFHLS
501: YNMLLNQLRC EEGDPENLLR NSFFQFQADR AIPDLEKQIK SLEEERDSLV IEEEESLKNY YNLILQYKSL KKDIREIVFT PKYCLPFLLP NRAVCLDCTN
601: DDEEPQSFSI EDQDTWGVIM KFNKVKSLSE DDDSRRPEDA NYTVDVLTRC MVSKDGVGKK KVKAVPIKER GEPVVVTVPL SQIKSLSSAI MNIPKDLVPL
701: EARENALKKV SELLSRHPDG IPLDPEVDMK IKSSSYKKTV RRLEALENLF EKHKIAKSPL ITEKLKVLQM KEELIAKIKS LKKTVRSSTA LAFKDELKAR
801: KRVLRRLGYI TSDNVVELKG KVACEISSAE ELTLTELMFS GIFKDAKVEE LVSLLSCFVW RERLPDAAKP REELDLLFIQ LQDTARRVAE VQLDCKVEID
901: VESFVQSFRP DIMEAVYAWA KGSKFYEVME IARVFEGSLI RAIRRMEEVL QQLIVAAKSI GETQLEAKLE EAVSKIKRDI VFAASLYL
101: YAIAMSLKEN QRVIYTSPIK ALSNQKYRDF KEEFSDVGLM TGDVTIDPNA SCLVMTTEIL RSMQYKGSEI MREVAWIIFD EVHYMRDSER GVVWEESIVM
201: APKNSRFVFL SATVPNAKEF ADWVAKVHQQ PCHIVYTDYR PTPLQHYVFP AGGNGLYLVV DEKSKFHEDS FQKSLNALVP TNESDKKRDN GKFQKGLVIG
301: KLGEESDIFK LVKMIIQRQY DPVILFSFSK KECEALAMQM SKMVLNSDDE KDAVETIFAS AIDMLSDDDK KLPQVSNILP ILKRGIGVHH SGLLPILKEV
401: IEILFQEGLI KCLFATETFS IGLNMPAKTV VFTNVRKFDG DKFRWLSSGE YIQMSGRAGR RGIDKRGICI LMVDEKMEPA VAKSMLKGSA DSLNSAFHLS
501: YNMLLNQLRC EEGDPENLLR NSFFQFQADR AIPDLEKQIK SLEEERDSLV IEEEESLKNY YNLILQYKSL KKDIREIVFT PKYCLPFLLP NRAVCLDCTN
601: DDEEPQSFSI EDQDTWGVIM KFNKVKSLSE DDDSRRPEDA NYTVDVLTRC MVSKDGVGKK KVKAVPIKER GEPVVVTVPL SQIKSLSSAI MNIPKDLVPL
701: EARENALKKV SELLSRHPDG IPLDPEVDMK IKSSSYKKTV RRLEALENLF EKHKIAKSPL ITEKLKVLQM KEELIAKIKS LKKTVRSSTA LAFKDELKAR
801: KRVLRRLGYI TSDNVVELKG KVACEISSAE ELTLTELMFS GIFKDAKVEE LVSLLSCFVW RERLPDAAKP REELDLLFIQ LQDTARRVAE VQLDCKVEID
901: VESFVQSFRP DIMEAVYAWA KGSKFYEVME IARVFEGSLI RAIRRMEEVL QQLIVAAKSI GETQLEAKLE EAVSKIKRDI VFAASLYL
Arabidopsis Description
MTR4DExH-box ATP-dependent RNA helicase DExH9 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIF2]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.