CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048095_P005	Maize	mitochondrion	97.6	97.6
TraesCS4D01G247100.1	Wheat	mitochondrion, peroxisome	88.15	88.4
TraesCS4A01G057200.1	Wheat	mitochondrion, peroxisome	88.05	88.31
TraesCS4B01G247900.1	Wheat	mitochondrion, peroxisome	87.86	88.11
HORVU4Hr1G068170.2	Barley	cytosol, nucleus	87.76	87.55
VIT_17s0000g07230.t01	Wine grape	cytosol	51.73	78.69
GSMUA_Achr8P28180_001	Banana	cytosol	73.85	76.72
CDY47018	Canola	cytosol	25.53	74.61
KRH54676	Soybean	nucleus	73.8	73.66
Solyc06g069480.2.1	Tomato	nucleus	73.46	73.32
AT5G61140.2	Thale cress	plastid	72.74	70.28
CDY42855	Canola	nucleus, plastid	71.07	69.83
Bra029333.1-P	Field mustard	plastid	70.78	69.15
CDY47017	Canola	cytosol	39.44	68.22
VIT_17s0000g07240.t01	Wine grape	cytosol	21.88	64.14
EES04337	Sorghum	cytosol	40.83	39.16
EER99779	Sorghum	cytosol	40.64	38.82
KXG37223	Sorghum	cytosol	38.63	36.52
OQU85316	Sorghum	nucleus	11.23	18.07
EER87693	Sorghum	cytosol	8.4	17.48
EES02351	Sorghum	nucleus	7.77	16.14
KXG29518	Sorghum	cytosol	9.69	14.73
OQU85441	Sorghum	plastid	8.16	14.29
OQU79067	Sorghum	plastid	11.56	11.6

Protein Annotations

Gene3D:1.10.10.2530	Gene3D:1.10.150.20	Gene3D:1.10.3380.10	Gene3D:2.60.40.150	Gene3D:3.40.50.300	MapMan:35.1
UniProt:A0A1B6QPN7	InterPro:AAA+_ATPase	InterPro:C2_domain_sf	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR035892	InterPro:Ig_E-set	EnsemblPlants:KXG39883
ProteinID:KXG39883	ProteinID:KXG39883.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF02889
PIRSF:PIRSF039073	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR24075	PANTHER:PTHR24075:SF6	SMART:SM00382
SMART:SM00487	SMART:SM00490	SMART:SM00973	EnsemblPlantsGene:SORBI_3001G457800	SUPFAM:SSF158702	SUPFAM:SSF46785
SUPFAM:SSF52540	SUPFAM:SSF81296	InterPro:Sec63-dom	UniParc:UPI00081AD2BF	InterPro:WH_DNA-bd_sf	SEG:seg

Description

hypothetical protein

Coordinates

chr1:+:73397461..73421227

Molecular Weight (calculated)

236009.0 Da

IEP (calculated)

6.706

GRAVY (calculated)

-0.240

Length

2084 amino acids

Sequence
(BLAST)

0001: MLAPLPRLTS ALRGRYDADQ AYLLRKSALQ ALTLPRPHDE WKLARKIVPG WDDASSEVRQ AYKQFIGAVV ELLSGEAVSE ELYEVAQTVY TLFGGDDTEY
0101: VAAERALSKR NELESLVGYT VQDSVLKKLS QLSQKLGSLQ RASAHESVHR IADDVNENDR TEFGADFDFK PPARFIVDVS LDVPLESAEL GSGPFEKGQY
0201: DAWSASTTSH STAVRGSVSL RWLKDQCALI TKSGGSMLSG DELAMTLCRV LLSNKAGDEI AGELLDLVGD TAFEIVQDLL LHRKELVDAI QHGLSILKSE
0301: KMTSGNQPKM PTYGTQVTVQ TESERQLDKI RRKEEKRSKR GADSGNSDIG VDDFSSLLLA SERKKPFDDV IGTGEGSDSF TVTSLPQGTT RKHMKGYEEV
0401: KIPPTPTASL KPNEKLIEIR ELDEFAQAAF QGYKSLNRVQ SRIFQATYYT NENILVCAPT GAGKTNIAMI AVLHEVKQHF RDGILHKNEF KIVYVAPMKA
0501: LAAEVTATFS RRLSPLNLVV RELTGDMQLT KNEIEETQMI VTTPEKWDVI TRKSSDMSLS MLVKLIIIDE VHLLNDDRGS VIEALVARTL RQVESMQSMI
0601: RIVGLSATLP TYLEVAQFLR VNPDTGLFFF DSSYRPVPLA QQYIGISERD YTKRSELFNT LCYEKVVESI KQGHQALVFV HTRKDTGKTA RTLIDLAAKA
0701: GELELFSSAD HPQFPLIKKD VSKAKSREVV EFFESGFGIH NAGMMRSDRS LMERLFGDGL LKVLVCTATL AWGVNLPAHT VVIKGTQLYD PKAGGWRDLG
0801: MLDVMQIFGR AGRPQFDKSG EGIIITTHDK LAYYLRLLTS QLPIESQFLG SLKDNLNAEV ALGTVTNVRE ACTWLGYTYL FIRMKTNPLV YGITWEEVMG
0901: DPSMGAKQRT FIIDAARALD KAKMMRFDEK SGNFYCTELG RIASHFYLQY SSVETYNEML RRHMSESELI TMVAHSSEFE NIVVREEEQD ELETLARKAC
1001: PLEIKGGPTD KHGKISILIQ VYISRAPIDS SSLHSDAQYI SQSLARIMRA LFEICLRRGW SEMSSLLLQY CKAVDRKIWP HLHPLRQFDK DLSPQILWKL
1101: EERNVDLDHL YEMEENEIGA LIRFSHQGKL VKQYAGYFPY VNLSATVSPI TRTVLKVDLH ITPEFVWKDR YHGMSERWWI IVEDSENDTI YHSELFTLTK
1201: KMARGTPTKI SFNVPIFEPH PPQYYIRAIS DSWLHAETLF TVSFHNLTLP QTQITHTELL DLKPLPLSAL GNKTYEDLYR FSHFNPIQTQ AFHVLYHTDN
1301: NVLLGAPTGS GKTISAELAM LHLFNTQPDM KVVYIAPLKA IVRERMNDWR KRLVTQLGKK MVEMTGDFTP DLMALLSADI IISTPEKWDG ISRNWHSRSY
1401: VMKVGLMILD EIHLLGADRG PILEVIVSRM RYISSQTERS IRFVGLSTAL ANARDLADWL GVTDDGLFNF KPSVRPVPLE VHIQGYPGKF YCPRMNSMNK
1501: PAYAAICTHS PNKPVLIFVS SRRQTRLTAL DIIQLAASDE KPRQFLSIAD NSLDMVLSQV SDSNLRHTLQ FGIGLHHAGL NDRDRTLVEE LFSNNKIQVL
1601: VCTSTLAWGV NLPAHLVIIK GTEYYDGKTK RYIDYDITDI LQMMGRAGRP QYDQHGKAVI LVHEPKKSFY KKFLYEPFPV ESNLREHLHD HINAEIVSGT
1701: ISNKEEAIIY LTWTYLYRRL VVNPAYYGLE DTETNTLNSY LSRLVETTFE DLEDSGCIKV DDHSVKYLIL GKIASQYYLS YLTVSMFGSN IGPNTSLEVF
1801: VHILSAAAEF DELPVRHNED NLNRILSGNV PYPVDQHHLD DPHVKANLLF QAHFSRAELP ISDYVTDLKS VLDQSIRIIQ AMIDVCANSG WLSSALTCMH
1901: LLQMIIQGLW FERDYESLWM LPSMNGDILD HLKGRGVSTV PSLLVLSREE LHKLLQPFSA SELYQDLQHF PRVDVKVKLR NEQERSKPPT LNIRLQLKNS
2001: RRSASRAFAP RFPKAKQEAW WLVLGNATSS ELYGLKRISF ADRVVNTRME LPQMFDAQET KLILVSDCYL GFDLEYYLEH LTKG

Best Arabidopsis Sequence Match ( AT5G61140.2 )
(BLAST)

0001: MVHNSPCNKH KTTSISWTRI LAGRCTGLFV QVSNRRRFRT QAIAFFLGEP TRGENTTEEK NPKRHKYRDF VMLVQLPRLT SSLREPFDID QAYLRRKTIL
0101: QTLNKPRSSG NRLDESDLAK RIVHQWEGAS LEVRQAYKQF IGAVVELIDR EVPSDEFREV AFSAYRLFNN PVEEDDSDIN DNISISGKKL ELQNLVGHAV
0201: SDANVKNVAS FAQALYSIQP THQSETYADE VNGGAEFGAD LVFNLPARFL VEASLDETGF VDVESNDAHT SFSEGWSGVS DTKNNLSAGK FNLSWLRDAC
0301: GRMVRETNSQ LSREELAMAI CRFLDSDKPG EEIAGDLLDL VGDGAFETVQ DLIMHRKEIV DAIHHGQMIL KSDKAASNTQ SRMPTYGTQV TVQTESAKQI
0401: EKLRRKEEKK NKRNADLGLE SEISEANFSS LLEASEKKTA FEDLIGSGEA NSLALALPQG TVRKHLKGYE EVFIPPTPTA QMKPGEKLIE IKELDDFAQA
0501: AFHGYKSLNR IQSRIFQTVY HTNENILVCA PTGAGKTNIA MISVLHEIKQ HFRDGYLHKN EFKIVYVAPM KALAAEVTSA FSRRLAPLNM VVKELTGDMQ
0601: LTKTELEETQ MIVTTPEKWD VITRKSSDMS MSMLVKLLII DEVHLLNDDR GAVIEALVAR TLRQVESTQT MIRIVGLSAT LPSYLQVAQF LRVNTDTGLF
0701: YFDSSYRPVP LAQQYIGITE HNFAARNELL NEICYKKVVD SIKQGHQAMI FVHSRKDTSK TAEKLVDLAR QYETLDLFTN ETHPQFQLMK KDVMKSRNKD
0801: LVKFFEAGFG IHHAGMLRSD RTLTERLFSD GLLKVLVCTA TLAWGVNLPA HTVVIKGTQL YDAKAGGWKD LGMLDVMQIF GRAGRPQFDK SGEGIIITSH
0901: DKLAYYLRLL TSQLPIESQF ISSLKDNLNA EVVLGTVTNV KEACAWLGYT YLSIRMKLNP LAYGIGWEEI IADPSLSLKQ RALVADAARS LDKAKMMRFD
1001: EKSGNFYCTE LGRVASHFYI QYSSVETYNE MLKRHMNESE IINMVAHSSE FENIVVREEE QHELETLARS CCPLEVKGGP SNKHGKISIL IQLYISRGSI
1101: DAFSLVSDAS YISASLARIM RALFEICLRK GWCEMTLFML EYCKAVDRQL WPHQHPLRQF ERDLPSDILR KLEERRDDLD HLYEMEEKEI GALIRYNPGG
1201: RLVKQHLGYF PSIQLAATVS PITRTVLKVD LLITPNFIWK DRFHGTALRW WILIEDTEND YIYHSDLFTL TKRMARGEPQ KLSFTVPIFE PHPPQYYVHA
1301: VSDSWLHAET YFTISFHNLA LPEARTSHTE LLDLKPLPVT SLGNKLYESL YKFSHFNPIQ TQIFHVLYHT DNNVLVGAPT GSGKTISAEL AMLRLFSTQP
1401: DMKVVYIAPL KAIVRERMND WKKHLVAPLG KEMVEMTGDY TPDLVALLSA DIIISTPEKW DGISRNWHTR SYVKKVGLVI LDEIHLLGAD RGPILEVIVS
1501: RMRYISSQTE RSVRFVGLST ALANAGDLAD WLGVGEIGLF NFKPSVRPVP IEVHIQGYPG KYYCPRMNSM NKPAYAAICT HSPTKPVLIF VSSRRQTRLT
1601: ALDLIQFAAS DEHPRQFLSV SEEDLQMVLS QITDQNLRHT LQFGIGLHHA GLNDHDRSAV EELFTNNKIQ VLVSTSTLAW GVNLPAHLVI IKGTEYFDGK
1701: TKRYVDFPLT EILQMMGRAG RPQFDQHGKA VILVHEPKKS FYKKFLYEPF PVESSLKEKL HDHFNAEIVS GTIGNKEDAV HYLTWTYLFR RLMANPAYYG
1801: LEGTQDETIC SYLSRLVQTT FEDLEDSGCL KVNEDSVEPT MLGTIASQYY LCYMTVSMFG SNIGPDTSLE AFLHILAGAS EYDELPVRHN EENYNKTLSD
1901: RVRYPVDNNH LDDPHVKANL LFQAHFSQLA LPISDYNTDL KSVLDQSIRI LQAMIDICAN SGWLSSSLTC MRLLQMVMQG MWSDQDSSLW MIPCMNDLLL
2001: GSLTARGIHT LHQLLNLPRE TLQSVTENFP ASRLSQDLQR FPRIQMNVRL QKKDSDGKKK PSTLEIRLEK TSKRNSSRAL APRFPKVKDE AWWLVLGDTS
2101: TSELFAVKRV SFTGRLITRM ELPPNITSFQ DTKLILVSDC YLGFEQEHSI EQLARRG

Arabidopsis Description

BRR2CDExH-box ATP-dependent RNA helicase DExH14 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNQ1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.