Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 2
- nucleus 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
VIT_17s0000g07230.t01 | Wine grape | cytosol | 53.14 | 77.81 |
KXG39883 | Sorghum | mitochondrion | 76.72 | 73.85 |
KRH54676 | Soybean | nucleus | 76.82 | 73.8 |
Zm00001d048095_P005 | Maize | mitochondrion | 76.62 | 73.75 |
TraesCS4D01G247100.1 | Wheat | mitochondrion, peroxisome | 75.82 | 73.2 |
TraesCS4A01G057200.1 | Wheat | mitochondrion, peroxisome | 75.82 | 73.2 |
TraesCS4B01G247900.1 | Wheat | mitochondrion, peroxisome | 75.67 | 73.05 |
Solyc06g069480.2.1 | Tomato | nucleus | 76.02 | 73.04 |
HORVU4Hr1G068170.2 | Barley | cytosol, nucleus | 75.77 | 72.76 |
CDY47017 | Canola | cytosol | 42.82 | 71.29 |
CDY42855 | Canola | nucleus, plastid | 73.43 | 69.45 |
AT5G61140.2 | Thale cress | plastid | 74.18 | 68.98 |
Bra029333.1-P | Field mustard | plastid | 73.03 | 68.68 |
CDY47018 | Canola | cytosol | 24.18 | 68.02 |
VIT_17s0000g07240.t01 | Wine grape | cytosol | 23.63 | 66.67 |
GSMUA_Achr3P29700_001 | Banana | cytosol | 35.94 | 39.18 |
GSMUA_Achr1P12000_001 | Banana | cytosol, nucleus, plastid | 10.77 | 19.57 |
GSMUA_Achr2P17890_001 | Banana | cytosol, nucleus, plastid | 8.57 | 17.0 |
GSMUA_Achr9P03710_001 | Banana | cytosol | 9.32 | 14.18 |
GSMUA_Achr8P22600_001 | Banana | plastid | 8.28 | 13.76 |
GSMUA_Achr3P05450_001 | Banana | nucleus | 7.23 | 13.43 |
GSMUA_Achr11P... | Banana | nucleus | 11.17 | 10.96 |
Protein Annotations
Gene3D:1.10.10.2530 | Gene3D:1.10.150.20 | Gene3D:1.10.3380.10 | Gene3D:2.60.40.150 | Gene3D:3.40.50.300 | MapMan:35.1 |
InterPro:AAA+_ATPase | InterPro:C2_domain_sf | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 |
GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005524 | EnsemblPlantsGene:GSMUA_Achr8G28180_001 |
EnsemblPlants:GSMUA_Achr8P28180_001 | EnsemblPlants:GSMUA_Achr8T28180_001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
InterPro:IPR035892 | UniProt:M0TUC1 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF02889 |
PIRSF:PIRSF039073 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR24075 | PANTHER:PTHR24075:SF6 | SMART:SM00382 |
SMART:SM00487 | SMART:SM00490 | SMART:SM00973 | SUPFAM:SSF158702 | SUPFAM:SSF46785 | SUPFAM:SSF52540 |
InterPro:Sec63-dom | UniParc:UPI0002962F31 | InterPro:WH_DNA-bd_sf | SEG:seg | : | : |
Description
Activating signal cointegrator 1 complex subunit 3 [Source:GMGC_GENE;Acc:GSMUA_Achr8G28180_001]
Coordinates
chr8:+:31034009..31069925
Molecular Weight (calculated)
227742.0 Da
IEP (calculated)
6.622
GRAVY (calculated)
-0.230
Length
2006 amino acids
Sequence
(BLAST)
(BLAST)
0001: MLIPLPRLTS SFRGPYDVDE AYLRRKRILE SLKSRRTNDE PELARKLIPR WDEASDALRQ TYRQYVGSVI ELINGEVTSE EFREVAKSAY DLFGHPDIDS
0101: SITKIIQEKK IELQQLVGYN IQDTVLLKVA SLAQRIYALQ NTSSEAVIGQ DLGADEHGDN RGEFGSNLSF HAPSRFIVDV PLENGASLTS DFQFKTASFD
0201: ANRNGHMAYI DHNLTADLKT INLRWLKDAC DLIVKNGASQ LSGDELAMAL CRVLLSDKAG DEIAGDLLDL VGDGAFETVQ DLLSHRKELV EAIQHGLLML
0301: KSEKMSSNSQ PKMPSYGTQV TIKTESERQI DKLRRKEEKR NKRVGEYGGT LDFPVESFSS LLLASEKKQP FDDLIGAGQG INSILVSALP QGTTRSHRSG
0401: YEEVRIPPTP TAAMRPDEKL IEIKELDDFA QAAFRGYKSL NRIQSRIYQT TYHTNENILV CAPTGAGKTN IAMIAILHEI KQNFKDGFLH KDEFKIVYVA
0501: PMKALAAEVT ATFSHRLSPL NLVVKELTGD MQLSKNELEE TQMIVTTPEK WDVITRKSSD MSLSMLVKLL IIDEVHLLND DRGSVIEALV ARTLRQVEST
0601: QSMIRIVGLS ATLPNYLEVA QFLHVNPESG LFFFDSSYRP VPLSQQYIGI SEKDYSKKNL LFNSICYDKV LDSIKQGHQA MVFVHSRKDT GKTARTLIEL
0701: ALKAGDLELF MNDKHPQFPL VKKEVTKSRN RELVELFESG FGIHHAGMLR SDRALTERLF SDGLLKVLVC TATLAWGVNL PAHTVIIKGT QLYDPKAGGW
0801: RDLGMLDVMQ IFGRAGRPQF DKSGEGIILT THDKLAYYLR LLTSQLPIES QFISSMKDNL NAEVALGTVT NVKEACAWLG YTYLFIRMKT NPLVYGISWD
0901: EVIGDPSLAS KQRSLIIDAA RALDKAKMMR FDEKSGNFYC TELGRIASHF YLQYSSVETY NEMLRRHMSD SEVINMVAHS SEFENIVVRE EEQDELENLS
1001: KMSCPLEIKG GTTDKHGKIS ILIQVYISHG SIESFSLISD AAYISASLGR IMRALFEICL RRGWCEMSSF MLQYCKAVDR QIWPYQHPLR QFDRELSAEV
1101: LRKLEERGTD LDRLYEMEEK DIGALIRYAP GGKLVKQFLG YFPSISLSAT VSPITRTVLK VDLLITPDFV WKDRFHGTAE RWWILVEDSE NDHIYHSELF
1201: ILTKKMARAE PQKISFTIPI FEPHPPQYYI RAVSDSWLYA ESLYTVSFHN LTLPETQVSH TELLDLKPLP VSSLGNEAYE NLYNFSHFNP IQTQSFHVLN
1301: HLDDNVLLGA PTGSGKTISA ELAMLHLFNT QPDMKVVYIA PLKAIVRERM NDWKKRLVSQ LGKKMVEMTG DFTPDLMALL SADIIISTPE KWDGISRSWQ
1401: SRSYVMKVGL MILDEIHLLG ADRGPILEVI VSRMRYISSQ TERSVRFVGL STALANARDL ADWLGIGENG LFNFKPSVRP VPLEMSRLLF SCKGYPGKFY
1501: CPRMNSMNKP AYAAICTHSP AKPVLIFVSS RRQTRLTALD LIQLAASDES PRQFLNIPEA SLEMVLSQIT DNNLRHTLRF GIGLHHAGLN DRDRSLVEEL
1601: FSNNKIQILV CTSTLAWGVN LPAHLVIIKG TEYYDGKAKR YVDFPITDIL QMMGRAGRPQ YDQHGKAVIL VHEPKKSFYK KFLYEPFPVE SNLREHLHNH
1701: INAEVVSGTI SHKEDAVHYL TWTYLFRRLV RNPSYYGLED TEASTLNSYL SRLMQDTFED LEDSGCIKMN ENSVEPLMLG SIASQYYLSY MTVSMFGSNI
1801: GPSTSLEVFL HILSAASEFD ELPVRHNEEN INKTLAEKVP HMVDEHHLDD PHVKANLLFQ AHFSRIELPV TDYVTDLKSV LDQSIRIIQA MIDICANSGW
1901: LSSTMTCMHL LQMVMQGLWF GKDSSLWMLP CMNEDILNHL NNIGILSLQD LLELPKAKFQ QMLQRYPASE LYQQEQNRGR KYDLLCLSLV HWVHHWLRQL
2001: TWKTWR
0101: SITKIIQEKK IELQQLVGYN IQDTVLLKVA SLAQRIYALQ NTSSEAVIGQ DLGADEHGDN RGEFGSNLSF HAPSRFIVDV PLENGASLTS DFQFKTASFD
0201: ANRNGHMAYI DHNLTADLKT INLRWLKDAC DLIVKNGASQ LSGDELAMAL CRVLLSDKAG DEIAGDLLDL VGDGAFETVQ DLLSHRKELV EAIQHGLLML
0301: KSEKMSSNSQ PKMPSYGTQV TIKTESERQI DKLRRKEEKR NKRVGEYGGT LDFPVESFSS LLLASEKKQP FDDLIGAGQG INSILVSALP QGTTRSHRSG
0401: YEEVRIPPTP TAAMRPDEKL IEIKELDDFA QAAFRGYKSL NRIQSRIYQT TYHTNENILV CAPTGAGKTN IAMIAILHEI KQNFKDGFLH KDEFKIVYVA
0501: PMKALAAEVT ATFSHRLSPL NLVVKELTGD MQLSKNELEE TQMIVTTPEK WDVITRKSSD MSLSMLVKLL IIDEVHLLND DRGSVIEALV ARTLRQVEST
0601: QSMIRIVGLS ATLPNYLEVA QFLHVNPESG LFFFDSSYRP VPLSQQYIGI SEKDYSKKNL LFNSICYDKV LDSIKQGHQA MVFVHSRKDT GKTARTLIEL
0701: ALKAGDLELF MNDKHPQFPL VKKEVTKSRN RELVELFESG FGIHHAGMLR SDRALTERLF SDGLLKVLVC TATLAWGVNL PAHTVIIKGT QLYDPKAGGW
0801: RDLGMLDVMQ IFGRAGRPQF DKSGEGIILT THDKLAYYLR LLTSQLPIES QFISSMKDNL NAEVALGTVT NVKEACAWLG YTYLFIRMKT NPLVYGISWD
0901: EVIGDPSLAS KQRSLIIDAA RALDKAKMMR FDEKSGNFYC TELGRIASHF YLQYSSVETY NEMLRRHMSD SEVINMVAHS SEFENIVVRE EEQDELENLS
1001: KMSCPLEIKG GTTDKHGKIS ILIQVYISHG SIESFSLISD AAYISASLGR IMRALFEICL RRGWCEMSSF MLQYCKAVDR QIWPYQHPLR QFDRELSAEV
1101: LRKLEERGTD LDRLYEMEEK DIGALIRYAP GGKLVKQFLG YFPSISLSAT VSPITRTVLK VDLLITPDFV WKDRFHGTAE RWWILVEDSE NDHIYHSELF
1201: ILTKKMARAE PQKISFTIPI FEPHPPQYYI RAVSDSWLYA ESLYTVSFHN LTLPETQVSH TELLDLKPLP VSSLGNEAYE NLYNFSHFNP IQTQSFHVLN
1301: HLDDNVLLGA PTGSGKTISA ELAMLHLFNT QPDMKVVYIA PLKAIVRERM NDWKKRLVSQ LGKKMVEMTG DFTPDLMALL SADIIISTPE KWDGISRSWQ
1401: SRSYVMKVGL MILDEIHLLG ADRGPILEVI VSRMRYISSQ TERSVRFVGL STALANARDL ADWLGIGENG LFNFKPSVRP VPLEMSRLLF SCKGYPGKFY
1501: CPRMNSMNKP AYAAICTHSP AKPVLIFVSS RRQTRLTALD LIQLAASDES PRQFLNIPEA SLEMVLSQIT DNNLRHTLRF GIGLHHAGLN DRDRSLVEEL
1601: FSNNKIQILV CTSTLAWGVN LPAHLVIIKG TEYYDGKAKR YVDFPITDIL QMMGRAGRPQ YDQHGKAVIL VHEPKKSFYK KFLYEPFPVE SNLREHLHNH
1701: INAEVVSGTI SHKEDAVHYL TWTYLFRRLV RNPSYYGLED TEASTLNSYL SRLMQDTFED LEDSGCIKMN ENSVEPLMLG SIASQYYLSY MTVSMFGSNI
1801: GPSTSLEVFL HILSAASEFD ELPVRHNEEN INKTLAEKVP HMVDEHHLDD PHVKANLLFQ AHFSRIELPV TDYVTDLKSV LDQSIRIIQA MIDICANSGW
1901: LSSTMTCMHL LQMVMQGLWF GKDSSLWMLP CMNEDILNHL NNIGILSLQD LLELPKAKFQ QMLQRYPASE LYQQEQNRGR KYDLLCLSLV HWVHHWLRQL
2001: TWKTWR
0001: MVHNSPCNKH KTTSISWTRI LAGRCTGLFV QVSNRRRFRT QAIAFFLGEP TRGENTTEEK NPKRHKYRDF VMLVQLPRLT SSLREPFDID QAYLRRKTIL
0101: QTLNKPRSSG NRLDESDLAK RIVHQWEGAS LEVRQAYKQF IGAVVELIDR EVPSDEFREV AFSAYRLFNN PVEEDDSDIN DNISISGKKL ELQNLVGHAV
0201: SDANVKNVAS FAQALYSIQP THQSETYADE VNGGAEFGAD LVFNLPARFL VEASLDETGF VDVESNDAHT SFSEGWSGVS DTKNNLSAGK FNLSWLRDAC
0301: GRMVRETNSQ LSREELAMAI CRFLDSDKPG EEIAGDLLDL VGDGAFETVQ DLIMHRKEIV DAIHHGQMIL KSDKAASNTQ SRMPTYGTQV TVQTESAKQI
0401: EKLRRKEEKK NKRNADLGLE SEISEANFSS LLEASEKKTA FEDLIGSGEA NSLALALPQG TVRKHLKGYE EVFIPPTPTA QMKPGEKLIE IKELDDFAQA
0501: AFHGYKSLNR IQSRIFQTVY HTNENILVCA PTGAGKTNIA MISVLHEIKQ HFRDGYLHKN EFKIVYVAPM KALAAEVTSA FSRRLAPLNM VVKELTGDMQ
0601: LTKTELEETQ MIVTTPEKWD VITRKSSDMS MSMLVKLLII DEVHLLNDDR GAVIEALVAR TLRQVESTQT MIRIVGLSAT LPSYLQVAQF LRVNTDTGLF
0701: YFDSSYRPVP LAQQYIGITE HNFAARNELL NEICYKKVVD SIKQGHQAMI FVHSRKDTSK TAEKLVDLAR QYETLDLFTN ETHPQFQLMK KDVMKSRNKD
0801: LVKFFEAGFG IHHAGMLRSD RTLTERLFSD GLLKVLVCTA TLAWGVNLPA HTVVIKGTQL YDAKAGGWKD LGMLDVMQIF GRAGRPQFDK SGEGIIITSH
0901: DKLAYYLRLL TSQLPIESQF ISSLKDNLNA EVVLGTVTNV KEACAWLGYT YLSIRMKLNP LAYGIGWEEI IADPSLSLKQ RALVADAARS LDKAKMMRFD
1001: EKSGNFYCTE LGRVASHFYI QYSSVETYNE MLKRHMNESE IINMVAHSSE FENIVVREEE QHELETLARS CCPLEVKGGP SNKHGKISIL IQLYISRGSI
1101: DAFSLVSDAS YISASLARIM RALFEICLRK GWCEMTLFML EYCKAVDRQL WPHQHPLRQF ERDLPSDILR KLEERRDDLD HLYEMEEKEI GALIRYNPGG
1201: RLVKQHLGYF PSIQLAATVS PITRTVLKVD LLITPNFIWK DRFHGTALRW WILIEDTEND YIYHSDLFTL TKRMARGEPQ KLSFTVPIFE PHPPQYYVHA
1301: VSDSWLHAET YFTISFHNLA LPEARTSHTE LLDLKPLPVT SLGNKLYESL YKFSHFNPIQ TQIFHVLYHT DNNVLVGAPT GSGKTISAEL AMLRLFSTQP
1401: DMKVVYIAPL KAIVRERMND WKKHLVAPLG KEMVEMTGDY TPDLVALLSA DIIISTPEKW DGISRNWHTR SYVKKVGLVI LDEIHLLGAD RGPILEVIVS
1501: RMRYISSQTE RSVRFVGLST ALANAGDLAD WLGVGEIGLF NFKPSVRPVP IEVHIQGYPG KYYCPRMNSM NKPAYAAICT HSPTKPVLIF VSSRRQTRLT
1601: ALDLIQFAAS DEHPRQFLSV SEEDLQMVLS QITDQNLRHT LQFGIGLHHA GLNDHDRSAV EELFTNNKIQ VLVSTSTLAW GVNLPAHLVI IKGTEYFDGK
1701: TKRYVDFPLT EILQMMGRAG RPQFDQHGKA VILVHEPKKS FYKKFLYEPF PVESSLKEKL HDHFNAEIVS GTIGNKEDAV HYLTWTYLFR RLMANPAYYG
1801: LEGTQDETIC SYLSRLVQTT FEDLEDSGCL KVNEDSVEPT MLGTIASQYY LCYMTVSMFG SNIGPDTSLE AFLHILAGAS EYDELPVRHN EENYNKTLSD
1901: RVRYPVDNNH LDDPHVKANL LFQAHFSQLA LPISDYNTDL KSVLDQSIRI LQAMIDICAN SGWLSSSLTC MRLLQMVMQG MWSDQDSSLW MIPCMNDLLL
2001: GSLTARGIHT LHQLLNLPRE TLQSVTENFP ASRLSQDLQR FPRIQMNVRL QKKDSDGKKK PSTLEIRLEK TSKRNSSRAL APRFPKVKDE AWWLVLGDTS
2101: TSELFAVKRV SFTGRLITRM ELPPNITSFQ DTKLILVSDC YLGFEQEHSI EQLARRG
0101: QTLNKPRSSG NRLDESDLAK RIVHQWEGAS LEVRQAYKQF IGAVVELIDR EVPSDEFREV AFSAYRLFNN PVEEDDSDIN DNISISGKKL ELQNLVGHAV
0201: SDANVKNVAS FAQALYSIQP THQSETYADE VNGGAEFGAD LVFNLPARFL VEASLDETGF VDVESNDAHT SFSEGWSGVS DTKNNLSAGK FNLSWLRDAC
0301: GRMVRETNSQ LSREELAMAI CRFLDSDKPG EEIAGDLLDL VGDGAFETVQ DLIMHRKEIV DAIHHGQMIL KSDKAASNTQ SRMPTYGTQV TVQTESAKQI
0401: EKLRRKEEKK NKRNADLGLE SEISEANFSS LLEASEKKTA FEDLIGSGEA NSLALALPQG TVRKHLKGYE EVFIPPTPTA QMKPGEKLIE IKELDDFAQA
0501: AFHGYKSLNR IQSRIFQTVY HTNENILVCA PTGAGKTNIA MISVLHEIKQ HFRDGYLHKN EFKIVYVAPM KALAAEVTSA FSRRLAPLNM VVKELTGDMQ
0601: LTKTELEETQ MIVTTPEKWD VITRKSSDMS MSMLVKLLII DEVHLLNDDR GAVIEALVAR TLRQVESTQT MIRIVGLSAT LPSYLQVAQF LRVNTDTGLF
0701: YFDSSYRPVP LAQQYIGITE HNFAARNELL NEICYKKVVD SIKQGHQAMI FVHSRKDTSK TAEKLVDLAR QYETLDLFTN ETHPQFQLMK KDVMKSRNKD
0801: LVKFFEAGFG IHHAGMLRSD RTLTERLFSD GLLKVLVCTA TLAWGVNLPA HTVVIKGTQL YDAKAGGWKD LGMLDVMQIF GRAGRPQFDK SGEGIIITSH
0901: DKLAYYLRLL TSQLPIESQF ISSLKDNLNA EVVLGTVTNV KEACAWLGYT YLSIRMKLNP LAYGIGWEEI IADPSLSLKQ RALVADAARS LDKAKMMRFD
1001: EKSGNFYCTE LGRVASHFYI QYSSVETYNE MLKRHMNESE IINMVAHSSE FENIVVREEE QHELETLARS CCPLEVKGGP SNKHGKISIL IQLYISRGSI
1101: DAFSLVSDAS YISASLARIM RALFEICLRK GWCEMTLFML EYCKAVDRQL WPHQHPLRQF ERDLPSDILR KLEERRDDLD HLYEMEEKEI GALIRYNPGG
1201: RLVKQHLGYF PSIQLAATVS PITRTVLKVD LLITPNFIWK DRFHGTALRW WILIEDTEND YIYHSDLFTL TKRMARGEPQ KLSFTVPIFE PHPPQYYVHA
1301: VSDSWLHAET YFTISFHNLA LPEARTSHTE LLDLKPLPVT SLGNKLYESL YKFSHFNPIQ TQIFHVLYHT DNNVLVGAPT GSGKTISAEL AMLRLFSTQP
1401: DMKVVYIAPL KAIVRERMND WKKHLVAPLG KEMVEMTGDY TPDLVALLSA DIIISTPEKW DGISRNWHTR SYVKKVGLVI LDEIHLLGAD RGPILEVIVS
1501: RMRYISSQTE RSVRFVGLST ALANAGDLAD WLGVGEIGLF NFKPSVRPVP IEVHIQGYPG KYYCPRMNSM NKPAYAAICT HSPTKPVLIF VSSRRQTRLT
1601: ALDLIQFAAS DEHPRQFLSV SEEDLQMVLS QITDQNLRHT LQFGIGLHHA GLNDHDRSAV EELFTNNKIQ VLVSTSTLAW GVNLPAHLVI IKGTEYFDGK
1701: TKRYVDFPLT EILQMMGRAG RPQFDQHGKA VILVHEPKKS FYKKFLYEPF PVESSLKEKL HDHFNAEIVS GTIGNKEDAV HYLTWTYLFR RLMANPAYYG
1801: LEGTQDETIC SYLSRLVQTT FEDLEDSGCL KVNEDSVEPT MLGTIASQYY LCYMTVSMFG SNIGPDTSLE AFLHILAGAS EYDELPVRHN EENYNKTLSD
1901: RVRYPVDNNH LDDPHVKANL LFQAHFSQLA LPISDYNTDL KSVLDQSIRI LQAMIDICAN SGWLSSSLTC MRLLQMVMQG MWSDQDSSLW MIPCMNDLLL
2001: GSLTARGIHT LHQLLNLPRE TLQSVTENFP ASRLSQDLQR FPRIQMNVRL QKKDSDGKKK PSTLEIRLEK TSKRNSSRAL APRFPKVKDE AWWLVLGDTS
2101: TSELFAVKRV SFTGRLITRM ELPPNITSFQ DTKLILVSDC YLGFEQEHSI EQLARRG
Arabidopsis Description
BRR2CDExH-box ATP-dependent RNA helicase DExH14 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNQ1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.