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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 3
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_17s0000g07230.t01 Wine grape cytosol 57.61 87.81
CDY47018 Canola cytosol 27.3 79.94
Solyc06g069480.2.1 Tomato nucleus 79.6 79.6
CDY47017 Canola cytosol 44.54 77.18
CDY42855 Canola nucleus, plastid 78.35 77.13
GSMUA_Achr8P28180_001 Banana cytosol 73.8 76.82
AT5G61140.2 Thale cress plastid 79.21 76.68
Bra029333.1-P Field mustard plastid 77.83 76.18
VIT_17s0000g07240.t01 Wine grape cytosol 25.14 73.84
KXG39883 Sorghum mitochondrion 73.66 73.8
Zm00001d048095_P005 Maize mitochondrion 73.61 73.75
TraesCS4D01G247100.1 Wheat mitochondrion, peroxisome 71.74 72.09
TraesCS4A01G057200.1 Wheat mitochondrion, peroxisome 71.65 71.99
TraesCS4B01G247900.1 Wheat mitochondrion, peroxisome 71.46 71.8
HORVU4Hr1G068170.2 Barley cytosol, nucleus 71.55 71.52
KRH43818 Soybean nucleus 41.19 39.4
KRH13647 Soybean cytosol 41.09 39.3
KRH07179 Soybean endoplasmic reticulum, plastid 10.92 19.16
KRH46878 Soybean nucleus 8.24 17.53
KRH41401 Soybean nucleus 7.81 16.7
KRH60115 Soybean cytosol 7.71 16.65
KRG98348 Soybean cytosol 9.53 14.83
KRH74713 Soybean nucleus 8.09 14.54
KRH16213 Soybean nucleus 11.83 11.5
Protein Annotations
Gene3D:1.10.10.2530Gene3D:1.10.150.20Gene3D:1.10.3380.10EntrezGene:100811503Gene3D:2.60.40.150Gene3D:3.40.50.300
MapMan:35.1InterPro:AAA+_ATPaseEMBL:ACUP02003562InterPro:C2_domain_sfncoils:CoilInterPro:DEAD/DEAH_box_helicase_dom
EnsemblPlantsGene:GLYMA_06G202500GO:GO:0000166GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0003729
GO:GO:0005488GO:GO:0005524InterPro:Helicase_ATP-bdInterPro:Helicase_CInterPro:IPR001650InterPro:IPR014001
InterPro:IPR035892InterPro:Ig_E-setUniProt:K7KW51EnsemblPlants:KRH54676ProteinID:KRH54676ProteinID:KRH54676.1
InterPro:P-loop_NTPasePFAM:PF00270PFAM:PF00271PFAM:PF02889PIRSF:PIRSF039073PFscan:PS51192
PFscan:PS51194PANTHER:PTHR24075PANTHER:PTHR24075:SF6SMART:SM00382SMART:SM00487SMART:SM00490
SMART:SM00973SUPFAM:SSF158702SUPFAM:SSF46785SUPFAM:SSF52540SUPFAM:SSF81296InterPro:Sec63-dom
UniParc:UPI0002339750InterPro:WH_DNA-bd_sfSEG:seg:::
Description
hypothetical protein
Coordinates
chr6:-:18799727..18855684
Molecular Weight (calculated)
237485.0 Da
IEP (calculated)
6.601
GRAVY (calculated)
-0.247
Length
2088 amino acids
Sequence
(BLAST)
0001: MLFQIPRLTN SLRDPFDVDQ YYLHRKTILH NQKPSNSASS LDESELARKI VHGWEKASSD VRQAYKQFIG AVVDLVDGET RSEEFHEVAL TMYRLFGRPM
0101: EEEDHIDKII SDKKLELQKL VGRTVTDAKL RQVASLAQRL LNLQPSNKNS AISFERNLDA NEDLEFGADL FFQAPARFLV DVSLDDGDMM DFESTVSLEF
0201: HKEQYGHNVP TDHSVVNREK FNLTWLRDAC DKIVKNCNSQ LSQDELAMAI CRVLYSEKPG EEIAGDLLDL VGDSAFETVQ IFLLHRKEIV DSIHHGLLVL
0301: KSDKNASNAQ SRMPSYGTQV TVQTESEKQI DKLRRKEEKR NRRGVEHAGD GELSALDFSS LHQASERKKM FDEMIGSGDK FESIAVTALP EGTVRKHFKG
0401: YEEVNIPPKP TAPLKPGEKL IEIRELDDFA QAAFRGYKSL NRIQSRIFPT VYGTNENILV CAPTGAGKTN IAMVSILHEI GQHFRDGYLH KEEFKIVYVA
0501: PMKALAAEVT STFSQRLSPL NMIVRELTGD MQLSKNELEE TQMIVTTPEK WDVITRKSSD MSLSMLVKLL IIDEVHLLND DRGPVIEALV ARTLRQVEST
0601: QTMIRIVGLS ATLPNYLEVA QFLRVNPDTG LFFFDSSYRP VPLAQQYIGI SEPNFAARNE LLNDICYTKI ADSLRQGHQA MVFVHSRKDT AKTADKLVEL
0701: ARRNEDFELF SNNTHPQYTF MKKEVIKSRN KDLVQLFEYG VGVHHAGMLR ADRGLTERLF SDGLLKVLVC TATLAWGVNL PAHTVVIKGT QLYDPKAGGW
0801: RDLGMLDVMQ IFGRAGRPQF DKSGEGIIIT SHDKLAYYLR LLTSQLPIES QFISSLKDNL NAEVALGTVT NVKEACAWLG YTYLFIRMRM NPLAYGIGWD
0901: EVMVDPALSS KQRSLVIDAA RALDKAKMMR FDEKSGNFYC TELGRIASHF YIQYSSVETY NEMLRRHMND SEVINMIAHS SEFENIAVRE EEQNELEMLA
1001: RTSCPLEIKG GPSNKHGKIS ILIQLYISRG SIDSFSLVSD ASYISASLAR ITRALFEICL RRGWCEMSLF MLEYCKAVDR QVWPHQHPLR QFDKDLSAEI
1101: LRKLEERGAD LDRLYEMEEK DIGALIRYAP GGRLVKQHLG YFPSLQLSAT VSPITRTVLK VDLVITPVFI WKDRFHGTAQ RWWILVEDSE NDHIYHSELF
1201: TLTKRMARGE PYKLSFTVPI FEPHPPQYYI HAISDSWLHA EAFYTITFHN LPLPEARTAH TELLDLKPLP MSSLGNSTYE ALYKFSHFNP IQTQTFHVLY
1301: HTDNNVLLGA PTGSGKTISA ELAMLRLFNT QPDMKVIYIA PLKAIVRERM SDWQKRLVSQ LGKKMVEMTG DYTPDLTALL SANIIISTPE KWDGISRNWH
1401: SRSYVTKVGL MILDEIHLLG ADRGPILEVI VSRMRYISSQ TERAVRFVGL STALANAGDL ADWLGVEEIG LFNFKPSVRP VPLEVHIQGY PGKYYCPRMN
1501: SMNKPAYAAI CTHSPAKPVL IFVSSRRQTR LTALDLIQFA ASDEQSRQFL NLPEETLQMV LSQVSDLNLR HTLQFGIGLH HAGLNDKDRS LVEELFANNK
1601: IQILVCTSTL AWGVNLPAHL VIIKGTEYYD GKAKRYVDFP ITDILQMMGR AGRPQFDQHG KAVILVHEPK KSFYKKFLYE PFPVESSLRE QLHDHINAEI
1701: ISGTICHKQD AVHYLTWTYL FRRLMVNPAY YGLEDAESEF LNTYLSSLVQ TTFEDLEDSG CIKMDEDKVE PMMLGTIASQ YYLSYMTVSM FGSNIGPDTS
1801: LEVFLHILSA ASEFDELPVR HNEEKYNEAL SEKVKYPVDK NRLDDPHIKA LLLFQAHFSQ LELPISDYVT DLKSVLDQSI RVIQAMIDIC ANSGWLSSSI
1901: TCMHLLQMVM QGLWFDKESS LWMLPCMNTD LISSLSRRGI SSVQELLDIP KAALQTVTAN FPASRLYQDL QHFPHVKMKL KVQRKDTDGD RSRILSVRLE
2001: KTNSRRHSSR AFVPRFPKIK EEQWWLVLGN TSTSELYALK RVSVSDHLVT SMKLPLTPAN LQGVKLILVS DCYIGFEQEH SIEELDVC
Best Arabidopsis Sequence Match ( AT5G61140.2 )
(BLAST)
0001: MVHNSPCNKH KTTSISWTRI LAGRCTGLFV QVSNRRRFRT QAIAFFLGEP TRGENTTEEK NPKRHKYRDF VMLVQLPRLT SSLREPFDID QAYLRRKTIL
0101: QTLNKPRSSG NRLDESDLAK RIVHQWEGAS LEVRQAYKQF IGAVVELIDR EVPSDEFREV AFSAYRLFNN PVEEDDSDIN DNISISGKKL ELQNLVGHAV
0201: SDANVKNVAS FAQALYSIQP THQSETYADE VNGGAEFGAD LVFNLPARFL VEASLDETGF VDVESNDAHT SFSEGWSGVS DTKNNLSAGK FNLSWLRDAC
0301: GRMVRETNSQ LSREELAMAI CRFLDSDKPG EEIAGDLLDL VGDGAFETVQ DLIMHRKEIV DAIHHGQMIL KSDKAASNTQ SRMPTYGTQV TVQTESAKQI
0401: EKLRRKEEKK NKRNADLGLE SEISEANFSS LLEASEKKTA FEDLIGSGEA NSLALALPQG TVRKHLKGYE EVFIPPTPTA QMKPGEKLIE IKELDDFAQA
0501: AFHGYKSLNR IQSRIFQTVY HTNENILVCA PTGAGKTNIA MISVLHEIKQ HFRDGYLHKN EFKIVYVAPM KALAAEVTSA FSRRLAPLNM VVKELTGDMQ
0601: LTKTELEETQ MIVTTPEKWD VITRKSSDMS MSMLVKLLII DEVHLLNDDR GAVIEALVAR TLRQVESTQT MIRIVGLSAT LPSYLQVAQF LRVNTDTGLF
0701: YFDSSYRPVP LAQQYIGITE HNFAARNELL NEICYKKVVD SIKQGHQAMI FVHSRKDTSK TAEKLVDLAR QYETLDLFTN ETHPQFQLMK KDVMKSRNKD
0801: LVKFFEAGFG IHHAGMLRSD RTLTERLFSD GLLKVLVCTA TLAWGVNLPA HTVVIKGTQL YDAKAGGWKD LGMLDVMQIF GRAGRPQFDK SGEGIIITSH
0901: DKLAYYLRLL TSQLPIESQF ISSLKDNLNA EVVLGTVTNV KEACAWLGYT YLSIRMKLNP LAYGIGWEEI IADPSLSLKQ RALVADAARS LDKAKMMRFD
1001: EKSGNFYCTE LGRVASHFYI QYSSVETYNE MLKRHMNESE IINMVAHSSE FENIVVREEE QHELETLARS CCPLEVKGGP SNKHGKISIL IQLYISRGSI
1101: DAFSLVSDAS YISASLARIM RALFEICLRK GWCEMTLFML EYCKAVDRQL WPHQHPLRQF ERDLPSDILR KLEERRDDLD HLYEMEEKEI GALIRYNPGG
1201: RLVKQHLGYF PSIQLAATVS PITRTVLKVD LLITPNFIWK DRFHGTALRW WILIEDTEND YIYHSDLFTL TKRMARGEPQ KLSFTVPIFE PHPPQYYVHA
1301: VSDSWLHAET YFTISFHNLA LPEARTSHTE LLDLKPLPVT SLGNKLYESL YKFSHFNPIQ TQIFHVLYHT DNNVLVGAPT GSGKTISAEL AMLRLFSTQP
1401: DMKVVYIAPL KAIVRERMND WKKHLVAPLG KEMVEMTGDY TPDLVALLSA DIIISTPEKW DGISRNWHTR SYVKKVGLVI LDEIHLLGAD RGPILEVIVS
1501: RMRYISSQTE RSVRFVGLST ALANAGDLAD WLGVGEIGLF NFKPSVRPVP IEVHIQGYPG KYYCPRMNSM NKPAYAAICT HSPTKPVLIF VSSRRQTRLT
1601: ALDLIQFAAS DEHPRQFLSV SEEDLQMVLS QITDQNLRHT LQFGIGLHHA GLNDHDRSAV EELFTNNKIQ VLVSTSTLAW GVNLPAHLVI IKGTEYFDGK
1701: TKRYVDFPLT EILQMMGRAG RPQFDQHGKA VILVHEPKKS FYKKFLYEPF PVESSLKEKL HDHFNAEIVS GTIGNKEDAV HYLTWTYLFR RLMANPAYYG
1801: LEGTQDETIC SYLSRLVQTT FEDLEDSGCL KVNEDSVEPT MLGTIASQYY LCYMTVSMFG SNIGPDTSLE AFLHILAGAS EYDELPVRHN EENYNKTLSD
1901: RVRYPVDNNH LDDPHVKANL LFQAHFSQLA LPISDYNTDL KSVLDQSIRI LQAMIDICAN SGWLSSSLTC MRLLQMVMQG MWSDQDSSLW MIPCMNDLLL
2001: GSLTARGIHT LHQLLNLPRE TLQSVTENFP ASRLSQDLQR FPRIQMNVRL QKKDSDGKKK PSTLEIRLEK TSKRNSSRAL APRFPKVKDE AWWLVLGDTS
2101: TSELFAVKRV SFTGRLITRM ELPPNITSFQ DTKLILVSDC YLGFEQEHSI EQLARRG
Arabidopsis Description
BRR2CDExH-box ATP-dependent RNA helicase DExH14 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNQ1]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.