CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 8
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0026g01000.t01	Wine grape	cytosol	71.77	78.38
PGSC0003DMT400058295	Potato	plastid	71.34	71.71
Solyc05g006530.2.1	Tomato	nucleus	71.0	71.49
CDY38782	Canola	plastid	68.33	68.15
Bra016240.1-P	Field mustard	plastid	68.24	68.01
CDY11624	Canola	plastid	67.13	67.71
AT1G70070.1	Thale cress	plastid	67.38	66.87
TraesCS6D01G291500.1	Wheat	plastid	63.86	62.99
Zm00001d017982_P001	Maize	plastid	63.6	62.89
Os02t0739000-01	Rice	plastid, vacuole	63.51	62.6
HORVU6Hr1G076860.2	Barley	plastid	63.94	62.12
GSMUA_Achr8P22600_001	Banana	plastid	64.29	61.94
TraesCS6B01G342300.1	Wheat	plastid	64.03	61.9
TraesCS6A01G312100.1	Wheat	plastid	63.77	61.54
OQU85441	Sorghum	plastid	62.48	61.01
KRH46878	Soybean	nucleus	21.43	25.38
KRH41401	Soybean	nucleus	20.4	24.28
KRH60115	Soybean	cytosol	19.97	23.99
KRG98348	Soybean	cytosol	21.94	19.0
KRH07179	Soybean	endoplasmic reticulum, plastid	12.22	11.93
KRH54676	Soybean	nucleus	14.54	8.09
KRH16213	Soybean	nucleus	14.2	7.69
KRH43818	Soybean	nucleus	13.94	7.42
KRH13647	Soybean	cytosol	13.94	7.42

Protein Annotations

Gene3D:1.10.3380.30	Gene3D:1.20.1500.20	EntrezGene:100780908	MapMan:16.12.2.1.1.3	Gene3D:3.40.50.300	EMBL:ACUP02000063
ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlantsGene:GLYMA_01G038100	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	UniProt:K7K1N0	EnsemblPlants:KRH74713	ProteinID:KRH74713
ProteinID:KRH74713.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF08148	PFscan:PS51192
PFscan:PS51194	PANTHER:PTHR24031	PANTHER:PTHR24031:SF360	SMART:SM00487	SMART:SM00490	SMART:SM01142
SUPFAM:SSF52540	InterPro:Ski2_C	UniParc:UPI00023370ED	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:-:4033780..4041344

Molecular Weight (calculated)

130653.0 Da

IEP (calculated)

5.321

GRAVY (calculated)

-0.310

Length

1162 amino acids

Sequence
(BLAST)

0001: MASNTELLLQ RYPFSSSFRF LPLTTTTTLS FSLLRPRSLP FPLKFHASFS FKSPTSTLRA FSDAEEDEED DEEDDEEEDQ DHDQDNVSAD EYDDVLGEAS
0101: DDEADVFSPH DGFKWQRVDK LCNEVREFGA DLIDVDELAS VYDFRIDKFQ RQAILAFLRG FSVVVSAPTS SGKTLIAEAA AVATVARGRR IFYTTPLKAL
0201: SNQKFREFRE TFGGSNVGLL TGDSAVNKDA QVLIMTTEIL RNMLYQSVGN VSSGSGLVNV DVIVLDEVHY LSDISRGTVW EEIVIYCPKE VQLICLSATV
0301: ANPDELAGWI GQIHGETELV TSSKRPVPLT WHFSLKNSLL PLLNEKGTHM NRKLSLNYLQ LQAAVAKPYK DDWSRKRNPR KRGTLSGYDS DDNMFEQRSL
0401: SKNNINAIRR SQVPQVIDTL WQLQSRDMLP AIWFIFSRKG CDAAVQYLEN CKLLDECESS EVELALKRFR KQYPDAVRES AVRGLLEGVA AHHAGCLPLW
0501: KAFIEELFQR GLVKVVFATE TLAAGINMPA RTAVISSLSK RGDSGRIPLS SNELLQMAGR AGRRGIDENG HVVLIQTPNE GAEEGCKVLF AGLEPLVSQF
0601: TASYGMVLNL LAGVKAIHRS NESDNMKPST GKTLEEARKL VEQSFGNYVS SNVMLAAKEE INKIEKEIEF LMSEITDEAI DRKSRKALSP RQYKEIAELL
0701: EDLRAEKRVR SELRKQKEAK RISALKPLLE EPESGHLPFL CLQYRDSEGV EHSIPAVFLG KVDSLNASKL KDMISSVDSF ALNLADAEPS VADSELKDDL
0801: KPSYHVALGS DNTWYLFTEK WIKTVYGTGF PNVPLAEGDA RPREIMSILL DKEDMKWDKL SHSEHGGLWF MEGSLDTWSW SLNVPVLSSL SENDELLLQS
0901: QDYKDAIERY KEQRNKVSRL KKKIVRSEGY KEYFKIIDAV KFTEEKIKRL KNRSKRLINR IEQIEPSGWK EFMQVSNVIH EIRALDINTH IIFPLGETAA
1001: AIRGENELWL AMVLRNKILL ELKPAQLAAV CASLVSAGIK VRPGKNNSYI YEPSATVTKF ITLLDEQRSA LLAMQDKHEV TISCCLDSQF CGMVEAWASG
1101: LTWRELMMDC AMDDGDLARL LRRTIDLLVQ IPKLPDIDPL LKHNAKAASS VMDRPPISEL VG

Best Arabidopsis Sequence Match ( AT1G70070.1 )
(BLAST)

0001: MNTLPVVSLT ASSSFKFFHF PSLHRSLSHS PNFSFTKSLI LNPNHLSFKS TLNSLSPSQS QLYEEEDDEE EEEEDEDDDD EAADEYDNIS DEIRNSDDDD
0101: DDEETEFSVD LPTESARERV EFRWQRVEKL RSLVRDFGVE MIDIDELISI YDFRIDKFQR LAIEAFLRGS SVVVSAPTSS GKTLIAEAAA VSTVAKGRRL
0201: FYTTPLKALS NQKFREFRET FGDDNVGLLT GDSAINKDAQ IVIMTTEILR NMLYQSVGMA SSGTGLFHVD AIVLDEVHYL SDISRGTVWE EIVIYCPKEV
0301: QLICLSATVA NPDELAGWIG EIHGKTELVT STRRPVPLTW YFSTKHSLLP LLDEKGINVN RKLSLNYLQL SASEARFRDD DDGYRKRRSK KRGGDTSYNN
0401: LVNVTDYPLS KNEINKIRRS QVPQISDTLW HLQGKNMLPA IWFIFNRRGC DAAVQYVENF QLLDDCEKSE VELALKKFRV LYPDAVRESA EKGLLRGIAA
0501: HHAGCLPLWK SFIEELFQRG LVKVVFATET LAAGINMPAR TAVISSLSKK AGNERIELGP NELYQMAGRA GRRGIDEKGY TVLVQTAFEG AEECCKLVFA
0601: GVKPLVSQFT ASYGMVLNLV AGSKVTRKSS GTEAGKVLQA GRSLEEAKKL VEKSFGNYVS SNVTVAAKQE LAEIDNKIEI LSSEISDEAI DKKSRKLLSA
0701: RDYKEITVLK EELREEKRKR AEQRRRMELE RFLALKPLLK GMEEGNLPFI CLEFKDSEGR EQSVPAVYLG HIDSFQGSKL QKMMSLDESF ALNLIEDELA
0801: ADEPGKPNVK PSYYVALGSD NSWYLFTEKW VRTVYRTGFP NIALALGDAL PREIMKNLLD KADMQWDKLA ESELGSLWRL EGSLETWSWS LNVPVLSSLS
0901: DEDEVLHMSE EYDNAAQKYK EQRSKISRLK KKMSRSEGFR EYKKILENAN LTVEKMKRLK ARSRRLINRL EQIEPSGWKD FMRISNVIHE SRALDINTHL
1001: IFPLGETAAA IRGENELWLA MVLRNKALVD LKPPQLAGVC ASLVSEGIKV RPWRDNNYIY EPSDTVVDMV NFLEDQRSSL IKLQEKHEVM IPCCLDVQFS
1101: GMVEAWASGL SWKEMMMECA MDEGDLARLL RRTIDLLAQI PKLPDIDPVL QRSAAAAADI MDRPPISELA G

Arabidopsis Description

ISE2DExH-box ATP-dependent RNA helicase DExH15 chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:B9DFG3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.