Factsheet for PGSC0003DMT400058295

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g006530.2.1	Tomato	nucleus	97.32	97.49
VIT_01s0026g01000.t01	Wine grape	cytosol	72.92	79.23
KRH74713	Soybean	nucleus	71.71	71.34
CDY38782	Canola	plastid	69.81	69.27
Bra016240.1-P	Field mustard	plastid	69.64	69.04
CDY11624	Canola	plastid	68.6	68.84
AT1G70070.1	Thale cress	plastid	68.17	67.29
Os02t0739000-01	Rice	plastid, vacuole	65.66	64.38
TraesCS6D01G291500.1	Wheat	plastid	65.05	63.84
Zm00001d017982_P001	Maize	plastid	64.53	63.49
GSMUA_Achr8P22600_001	Banana	plastid	65.66	62.94
HORVU6Hr1G076860.2	Barley	plastid	65.05	62.88
TraesCS6B01G342300.1	Wheat	plastid	65.22	62.73
TraesCS6A01G312100.1	Wheat	plastid	64.97	62.38
OQU85441	Sorghum	plastid	63.84	62.02
PGSC0003DMT400053716	Potato	cytosol, mitochondrion	1.99	30.67
PGSC0003DMT400052548	Potato	cytosol	21.63	25.54
PGSC0003DMT400053368	Potato	nucleus	21.37	24.9
PGSC0003DMT400035614	Potato	cytosol	21.37	24.8
PGSC0003DMT400001251	Potato	nucleus	5.45	22.66
PGSC0003DMT400053718	Potato	cytosol	2.34	22.13
PGSC0003DMT400037575	Potato	cytosol, extracellular	2.34	16.88
PGSC0003DMT400017202	Potato	cytosol	1.82	14.89
PGSC0003DMT400078069	Potato	cytosol	15.22	8.1
PGSC0003DMT400037571	Potato	nucleus, plastid	2.68	5.66
PGSC0003DMT400001255	Potato	cytosol, mitochondrion	3.11	4.89
PGSC0003DMT400069435	Potato	mitochondrion	0.78	3.85

Protein Annotations

Gene3D:1.10.3380.30	Gene3D:1.20.1500.20	EntrezGene:102584107	MapMan:16.12.2.1.1.3	Gene3D:3.40.50.300	ncoils:Coil
InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000003	GO:GO:0000166	GO:GO:0000373	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006397	GO:GO:0006810	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009790	GO:GO:0009791
GO:GO:0009793	GO:GO:0009987	GO:GO:0010494	GO:GO:0010497	GO:GO:0016441	GO:GO:0040029
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	UniProt:M1C2F9	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF08148	EnsemblPlantsGene:PGSC0003DMG400022635	PGSC:PGSC0003DMG400022635	EnsemblPlants:PGSC0003DMT400058295	PFscan:PS51192
PFscan:PS51194	PANTHER:PTHR24031	PANTHER:PTHR24031:SF360	SMART:SM00487	SMART:SM00490	SMART:SM01142
SUPFAM:SSF52540	InterPro:Ski2_C	UniParc:UPI000295B14F	RefSeq:XP_006357217.1	SEG:seg	:

Description

Increased size exclusion limit 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400022635]

Coordinates

chr5:-:6629865..6642473

Molecular Weight (calculated)

130095.0 Da

IEP (calculated)

5.097

GRAVY (calculated)

-0.278

Length

1156 amino acids

Sequence
(BLAST)

0001: MTTLPILFPS LSPSNSIISR SPFPLLHIQT LRFCSVKSIQ KNPFTSTSRI FYKFPSSIFP AESQDEDEDE DEDDEDDDDE EAAEEYDDVY AEVSDGGEDS
0101: EDELESSVSS EIFNIEESRR QRVEKLRNEV REFGDGIIDV NELASIYSFR IDKFQRLSIQ AFLRGSSVVV SAPTSSGKTL IAEAAAVATV ARGRRLFYTT
0201: PLKALSNQKF REFCETFGES NVGLLTGDSA VNRDAQILIM TTEILRNMLY QSVGIASSDG GLLHVDVIVL DEVHYLSDIS RGTVWEEIVI YCPKEVQLIC
0301: LSATVANPDE LAGWIGQIHG RTELVTSTKR PVPLTWHFST KTALLPLLDD KGTSMNRKLS LNYLQYDESG SELYREEGSK RRKLRRREND VRPLSKNDIS
0401: NIRRSQVPQI IDTLWHLKAR DMLPAVWFIF SRKGCDAAVQ YLEDCRLLDE CETSEVELAL KRFRIQYPDA VRVSAVKGLR RGVAAHHAGC LPLWKSFIEE
0501: LFQRGLVKVV FATETLAAGI NMPARTAVIS SLTKRGDSGR IQLSSNELFQ MAGRAGRRGI DEKGHVVLVQ TPYEGPEECC KVLFSGLQPL VSQFTASYGM
0601: VLNLVAGAKV TRRSTGLDEI KVTRAGRTLE EARKLIEQSF GNYVGSNVML AAKEELARIE KEIETLTSEI SEEAIARKSQ KLLTQSAYQE IAELEEELRA
0701: EKHLRTELRR KMELERVSSL KPLLKEIGDG HLPFMSLHYT DSDGVQHLVA AVYLGKVDTL NTEKLKSMVW DNEAFALKTA VENFELGDNG GEDVKPSYHV
0801: ALGSDNSWYL FTEKWIRTVY RTGFPNAALT LADALPREIM AELLDKADMQ WQKLAVSELG GLWCMEGSLE TWSWSLNVPV LSSLSEDDEV LQLSQAYNDA
0901: VECYKSQRNK VSRWKKRIAR TEGFKQYQKI IDSAKFTEEK IRRLKVRSKR LIGRIEQIEP TGWKEFLQVS NVIHESRALD INTHVIFPLG ETAAAIRGEN
1001: ELWLAMVLRN KLLLNLKPAQ LAAVLGSLVS EGIRLRPWKN NSFVYEPSTT VLNIIDLLEE QKSSLLELQE KHGVNIPCCL DSQFTGMVEA WASGLTWKEI
1101: MMDCAMDEGD LARLLRRTID LLAQVPKLPD IDPLLQINAK SASNVMDRPP ISELAG

Best Arabidopsis Sequence Match ( AT1G70070.1 )
(BLAST)

0001: MNTLPVVSLT ASSSFKFFHF PSLHRSLSHS PNFSFTKSLI LNPNHLSFKS TLNSLSPSQS QLYEEEDDEE EEEEDEDDDD EAADEYDNIS DEIRNSDDDD
0101: DDEETEFSVD LPTESARERV EFRWQRVEKL RSLVRDFGVE MIDIDELISI YDFRIDKFQR LAIEAFLRGS SVVVSAPTSS GKTLIAEAAA VSTVAKGRRL
0201: FYTTPLKALS NQKFREFRET FGDDNVGLLT GDSAINKDAQ IVIMTTEILR NMLYQSVGMA SSGTGLFHVD AIVLDEVHYL SDISRGTVWE EIVIYCPKEV
0301: QLICLSATVA NPDELAGWIG EIHGKTELVT STRRPVPLTW YFSTKHSLLP LLDEKGINVN RKLSLNYLQL SASEARFRDD DDGYRKRRSK KRGGDTSYNN
0401: LVNVTDYPLS KNEINKIRRS QVPQISDTLW HLQGKNMLPA IWFIFNRRGC DAAVQYVENF QLLDDCEKSE VELALKKFRV LYPDAVRESA EKGLLRGIAA
0501: HHAGCLPLWK SFIEELFQRG LVKVVFATET LAAGINMPAR TAVISSLSKK AGNERIELGP NELYQMAGRA GRRGIDEKGY TVLVQTAFEG AEECCKLVFA
0601: GVKPLVSQFT ASYGMVLNLV AGSKVTRKSS GTEAGKVLQA GRSLEEAKKL VEKSFGNYVS SNVTVAAKQE LAEIDNKIEI LSSEISDEAI DKKSRKLLSA
0701: RDYKEITVLK EELREEKRKR AEQRRRMELE RFLALKPLLK GMEEGNLPFI CLEFKDSEGR EQSVPAVYLG HIDSFQGSKL QKMMSLDESF ALNLIEDELA
0801: ADEPGKPNVK PSYYVALGSD NSWYLFTEKW VRTVYRTGFP NIALALGDAL PREIMKNLLD KADMQWDKLA ESELGSLWRL EGSLETWSWS LNVPVLSSLS
0901: DEDEVLHMSE EYDNAAQKYK EQRSKISRLK KKMSRSEGFR EYKKILENAN LTVEKMKRLK ARSRRLINRL EQIEPSGWKD FMRISNVIHE SRALDINTHL
1001: IFPLGETAAA IRGENELWLA MVLRNKALVD LKPPQLAGVC ASLVSEGIKV RPWRDNNYIY EPSDTVVDMV NFLEDQRSSL IKLQEKHEVM IPCCLDVQFS
1101: GMVEAWASGL SWKEMMMECA MDEGDLARLL RRTIDLLAQI PKLPDIDPVL QRSAAAAADI MDRPPISELA G

Arabidopsis Description

ISE2DExH-box ATP-dependent RNA helicase DExH15 chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:B9DFG3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.