Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os02t0617500-01 | Rice | cytosol | 74.1 | 33.07 |
| Solyc02g086580.2.1 | Tomato | cytosol | 94.6 | 21.84 |
| PGSC0003DMT400037575 | Potato | cytosol, extracellular | 11.51 | 20.0 |
| Bra033025.1-P | Field mustard | nucleus | 74.82 | 19.01 |
| CDY49767 | Canola | nucleus | 75.18 | 18.48 |
| CDY03992 | Canola | nucleus | 74.82 | 18.33 |
| AT3G27730.2 | Thale cress | nucleus | 75.18 | 18.29 |
| GSMUA_Achr1P12000_001 | Banana | cytosol, nucleus, plastid | 71.22 | 17.93 |
| KRH07179 | Soybean | endoplasmic reticulum, plastid | 76.26 | 17.82 |
| VIT_14s0066g00880.t01 | Wine grape | nucleus | 81.3 | 17.73 |
| HORVU4Hr1G049830.57 | Barley | nucleus | 70.14 | 17.38 |
| TraesCS4D01G171000.1 | Wheat | nucleus | 69.06 | 15.62 |
| Zm00001d051111_P001 | Maize | nucleus | 71.94 | 15.47 |
| OQU85316 | Sorghum | nucleus | 71.94 | 15.44 |
| TraesCS4A01G136200.1 | Wheat | nucleus | 69.42 | 15.07 |
| TraesCS4B01G168700.1 | Wheat | nucleus | 68.7 | 14.91 |
| PGSC0003DMT400053368 | Potato | nucleus | 20.86 | 5.85 |
| PGSC0003DMT400058295 | Potato | plastid | 22.66 | 5.45 |
| PGSC0003DMT400052548 | Potato | cytosol | 18.7 | 5.31 |
| PGSC0003DMT400035614 | Potato | cytosol | 18.7 | 5.22 |
| PGSC0003DMT400078069 | Potato | cytosol | 31.3 | 4.0 |
| PGSC0003DMT400037571 | Potato | nucleus, plastid | 5.76 | 2.92 |
| PGSC0003DMT400001255 | Potato | cytosol, mitochondrion | 2.52 | 0.95 |
| PGSC0003DMT400053716 | Potato | cytosol, mitochondrion | 0.0 | 0.0 |
| PGSC0003DMT400053718 | Potato | cytosol | 0.0 | 0.0 |
| PGSC0003DMT400069435 | Potato | mitochondrion | 0.0 | 0.0 |
| PGSC0003DMT400017202 | Potato | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:IPR014001 | UniProt:M0ZI59 | InterPro:P-loop_NTPase |
| PFAM:PF00270 | EnsemblPlantsGene:PGSC0003DMG401000479 | PGSC:PGSC0003DMG401000479 | EnsemblPlants:PGSC0003DMT400001251 | PFscan:PS51192 | PANTHER:PTHR24031 |
| PANTHER:PTHR24031:SF388 | SMART:SM00487 | SUPFAM:SSF52540 | UniParc:UPI0002956CDD | : | : |
Description
Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG401000479]
Coordinates
chr2:-:47255725..47258634
Molecular Weight (calculated)
31207.0 Da
IEP (calculated)
8.352
GRAVY (calculated)
0.128
Length
278 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGYALKSVS DLPPVFRSTF SFRYFNSLQS ECFPACFLSD VNMVISAPTG SGKTVLFELC ILRLLSRFIS GEGKFIHIKG SLKAIYVAPS KALIQEKLRN
101: WNQKLGSWGI NCLELTGDNE NYKITDIQDA DVILTTPEKF DAVTRYRIND GGLSFFGDIA LVLIDEVHLL NDPRGAVLEA IVSRIKMLSR KPELKSSALA
201: NVRFLAVSAT IPNIDDLAEW LMVPRQGVKR FGEEMRPVKL TTKVFGYTPA KNDFLFEKVC CLLSFLFQFS VYTSVHSF
101: WNQKLGSWGI NCLELTGDNE NYKITDIQDA DVILTTPEKF DAVTRYRIND GGLSFFGDIA LVLIDEVHLL NDPRGAVLEA IVSRIKMLSR KPELKSSALA
201: NVRFLAVSAT IPNIDDLAEW LMVPRQGVKR FGEEMRPVKL TTKVFGYTPA KNDFLFEKVC CLLSFLFQFS VYTSVHSF
0001: MDTHTLKSVS DLPGNFRSAF SFRYFNSLQS ECFPLCFHSD INMIISAPTG SGKTVLFELC ILRLFSKSIS KEGSFLHAKG ALKTVYISPS KALVQEKLRD
0101: WNQKFNSWGI SCLELTGDNE TYSTKNIQDA DIILTTPEKF DAVSRYRVTS GGLGFFSDIA LVLIDEVHLL NDPRGAALEA IVSRLKILSS NHELRSSTLA
0201: SVRLLAVSAT IPNIEDLAEW LKVPTAGIKR FGEEMRPVKL TTKVFGYAAA KNDFLFEKRL QNYIYDILMQ YSKGKSALVF CSTRKGAQEA AQKLAQTAMT
0301: YGYSNPFIKS REQLERLREA SPMCSDKQMQ SYILQGVGYH NGGLCQKDRS LVEGLFLNGD IQVICTTNTL AHGINLPAHT VVIKSTQHFN KEKGHYMEYD
0401: RSTLLQMSGR AGRPPFDDTG MVIIMTRRET VHLYENLLNG CEVVESQLLP CLIEHLTAEI VQLTISDITR AIEWMKCSYL YVRMKKNPEN YAIKKGIPKD
0501: RVEKHLQELC LQKINELSQY QMIWTDTDGF VLKPEEPGRL MTKYYLKFET MKYIINTPTS YSLDEALHIV CHAEEISWIQ LRRNEKKTLN DVNADKEGRL
0601: RFHINDNKGK RKKRIQTREE KLFVLANDWL TGDPSVHDLS MTQDANSICS NGSRIARCMK EYFIYKKNYK GTLSSTLLAK SLYQKLWDDS PYLLKQLPGI
0701: GMVTAKALHS MGVRSFEALA EADPRRIEIV TGRKYPFGNT IKESLSSLPP KVEIKVEEVD CQKQGISKLA VTLSRVSQPL QSTKRHYADL IVGSEEENLI
0801: HFHEKIRMED FSSPYSVTVL LERPHQQTKV TVKADLIFEE YIGIDLHETL LLKKANNNKV NYKSENRMPQ YYPPMASACI ADDDNPVTSG PSNRKDKKDD
0901: MPSFKLIDDD SEEEKEPYVT MEEDDCVIIN EHTVFDHIRE KAKCFPSLNP LNPTSSPASG KSILKRKSLV ENNSPELDPL FQYDSVFDLP TNTKDIKQSA
1001: QQITSPGYAS FAEKTETERP FSDETIFNYI RKRSKNSPAL ATSKIENPIT ISSQEGRNAE ISPYRTYGLL VSPATKIPRI TSDAPSEILS FDISMVKRSD
1101: TSLEQTKGFC STLAGKSNVS DSFLGFKSIF SFL
0101: WNQKFNSWGI SCLELTGDNE TYSTKNIQDA DIILTTPEKF DAVSRYRVTS GGLGFFSDIA LVLIDEVHLL NDPRGAALEA IVSRLKILSS NHELRSSTLA
0201: SVRLLAVSAT IPNIEDLAEW LKVPTAGIKR FGEEMRPVKL TTKVFGYAAA KNDFLFEKRL QNYIYDILMQ YSKGKSALVF CSTRKGAQEA AQKLAQTAMT
0301: YGYSNPFIKS REQLERLREA SPMCSDKQMQ SYILQGVGYH NGGLCQKDRS LVEGLFLNGD IQVICTTNTL AHGINLPAHT VVIKSTQHFN KEKGHYMEYD
0401: RSTLLQMSGR AGRPPFDDTG MVIIMTRRET VHLYENLLNG CEVVESQLLP CLIEHLTAEI VQLTISDITR AIEWMKCSYL YVRMKKNPEN YAIKKGIPKD
0501: RVEKHLQELC LQKINELSQY QMIWTDTDGF VLKPEEPGRL MTKYYLKFET MKYIINTPTS YSLDEALHIV CHAEEISWIQ LRRNEKKTLN DVNADKEGRL
0601: RFHINDNKGK RKKRIQTREE KLFVLANDWL TGDPSVHDLS MTQDANSICS NGSRIARCMK EYFIYKKNYK GTLSSTLLAK SLYQKLWDDS PYLLKQLPGI
0701: GMVTAKALHS MGVRSFEALA EADPRRIEIV TGRKYPFGNT IKESLSSLPP KVEIKVEEVD CQKQGISKLA VTLSRVSQPL QSTKRHYADL IVGSEEENLI
0801: HFHEKIRMED FSSPYSVTVL LERPHQQTKV TVKADLIFEE YIGIDLHETL LLKKANNNKV NYKSENRMPQ YYPPMASACI ADDDNPVTSG PSNRKDKKDD
0901: MPSFKLIDDD SEEEKEPYVT MEEDDCVIIN EHTVFDHIRE KAKCFPSLNP LNPTSSPASG KSILKRKSLV ENNSPELDPL FQYDSVFDLP TNTKDIKQSA
1001: QQITSPGYAS FAEKTETERP FSDETIFNYI RKRSKNSPAL ATSKIENPIT ISSQEGRNAE ISPYRTYGLL VSPATKIPRI TSDAPSEILS FDISMVKRSD
1101: TSLEQTKGFC STLAGKSNVS DSFLGFKSIF SFL
Arabidopsis Description
RCKDNA helicase ROCK-N-ROLLERS [Source:UniProtKB/TrEMBL;Acc:A0A1I9LN50]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.