Factsheet for PGSC0003DMT400035614

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g047520.2.1	Tomato	nucleus	92.97	98.93
VIT_11s0065g00340.t01	Wine grape	cytosol	85.24	85.33
PGSC0003DMT400052548	Potato	cytosol	82.53	83.96
AT2G06990.1	Thale cress	nucleus	80.72	80.8
Bra029783.1-P	Field mustard	cytosol	78.92	79.88
CDY44724	Canola	cytosol	79.02	79.66
CDY41593	Canola	cytosol	79.12	79.52
TraesCS4A01G216300.1	Wheat	cytosol	77.21	76.59
Os11t0176200-01	Rice	nucleus	76.81	76.27
TraesCS4D01G091400.1	Wheat	cytosol	77.31	76.09
HORVU2Hr1G028060.7	Barley	cytosol	76.81	76.04
Zm00001d008777_P008	Maize	nucleus	76.71	75.94
EES02351	Sorghum	nucleus	76.41	75.8
TraesCS2B01G179600.1	Wheat	cytosol	76.51	75.75
TraesCS2D01G159900.1	Wheat	cytosol	76.1	75.35
TraesCS2A01G154400.1	Wheat	cytosol	76.51	75.22
HORVU4Hr1G018990.9	Barley	plastid	75.9	72.9
PGSC0003DMT400017202	Potato	cytosol	9.94	70.21
TraesCS4B01G094600.1	Wheat	nucleus	76.91	69.89
PGSC0003DMT400053368	Potato	nucleus	46.69	46.88
PGSC0003DMT400053718	Potato	cytosol	4.42	36.07
PGSC0003DMT400053716	Potato	cytosol, mitochondrion	2.61	34.67
PGSC0003DMT400058295	Potato	plastid	24.8	21.37
PGSC0003DMT400001251	Potato	nucleus	5.22	18.7
PGSC0003DMT400037575	Potato	cytosol, extracellular	2.71	16.88
PGSC0003DMT400078069	Potato	cytosol	18.78	8.6
PGSC0003DMT400069435	Potato	mitochondrion	1.31	5.56
PGSC0003DMT400001255	Potato	cytosol, mitochondrion	3.61	4.89
PGSC0003DMT400037571	Potato	nucleus, plastid	2.41	4.38

Protein Annotations

Gene3D:1.10.3380.30	Gene3D:1.20.1500.20	EntrezGene:102587109	MapMan:16.8.1.2.3.1	Gene3D:2.40.30.300	Gene3D:3.40.50.300
ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003724	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006401
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	UniProt:M1B2J7	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFAM:PF08148	PFAM:PF13234	EnsemblPlantsGene:PGSC0003DMG400013698	PGSC:PGSC0003DMG400013698	EnsemblPlants:PGSC0003DMT400035614
PIRSF:PIRSF005198	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR12131	PANTHER:PTHR12131:SF6	SMART:SM00487
SMART:SM00490	SMART:SM01142	SUPFAM:SSF52540	InterPro:Ski2-like	InterPro:Ski2_C	UniParc:UPI00029575D5
RefSeq:XP_006360654.1	InterPro:rRNA_proc-arch_dom	SEG:seg	:	:	:

Description

HUA enhancer 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400013698]

Coordinates

chr5:+:43208014..43218554

Molecular Weight (calculated)

111749.0 Da

IEP (calculated)

6.874

GRAVY (calculated)

-0.281

Length

996 amino acids

Sequence
(BLAST)

001: MESSPAAVKR KEPEANPGEK EVPELNSSSK RANLTRTCVH EVAVPSSYTS TNDESVHGTL SNPCYNGEMA KIYPFKLDPF QEVSVACLER NESILVSAHT
101: SAGKTAVAEY AIAMSFRDKQ RVIYTSPLKA LSNQKYRELS HEFSDVGLMT GDVTLSPNAS CLVMTTEILR GMLYRGSEVL KEVAWVIFDE IHYMKDRERG
201: VVWEESIIFL PPAIKMVFLS ATMSNATQFA EWICNIHKQP CHVVYTDFRP TPLQHYMFPM GGSGLYLVID ENEQFREDNF LKMQDSFAKK KVGDGSNSAN
301: ARVRGRIAKG GSTSGGVSDI CKIVKMIMER KFQPVIVFSF SRRECEQHAM SMPKLDFNTE EEKEIVKEVF HNAVDCLSEE DRNLPAIELM LPLLQRGIAV
401: HHSGLLPVIK ELVELLFQEG LIKALFATET FAMGLNMPAK TVVFTSVKKW DGDSHRYIGS GEYIQMSGRA GRRGKDDRGI CIIMIDEKME MDSIKDMVLG
501: KPAPLVSTFR LSYYTILNLL SHAQGQFTAE HVIKHSFHQF QHEKALPDIG KKVSKLEEEA AKLDASGEGE VAEYHKLKLE IAQREKKLMA EITRPERVLH
601: FLLPGRLVKV WEGGKDWGWG VVVNVVKKPP AASGSMPAAL SASRSTGYIV DTLLHCSLGS GENGSQPKPC PPRPGEKGEM HVVPVQLPLI SSLSKLRISV
701: PADLRPLEAR QSILLAVQEL QKRFPQGLPK LNPVKDMGFE DPEFVDIVNQ IEELEKKLFA HPLHKSQDEH QLKSFQKKAE VNHEIQQLKS KMRDSQLQKF
801: RDELKNRSQV LKKLGHIDAD GVVLLKGRAA CLIDTGDELL VTELMLNGTF NDLDHHQTAA LASCFIPGDK TNEQIHLRAE LTKPLQQLQD TARRIAEIQR
901: ECKLEINIEE YVEASVRPFL MDVIYCWSKG ASFAEVIQMT DIFEGSIIRL VRRLDEFLNQ LKGAAHAAGE VDLENKFAAA SESLRRGIMF ANSLYL

Best Arabidopsis Sequence Match ( AT2G06990.1 )
(BLAST)

001: MSAQMEEPET LGKRKESESS KLRSDETPTP EPRTKRRSLK RACVHEVAVP NDYTPTKEET IHGTLDNPVF NGDMAKTYPF KLDPFQSVSV ACLERKESIL
101: VSAHTSAGKT AVAEYAIAMA FRDKQRVIYT SPLKALSNQK YRELQHEFKD VGLMTGDVTL SPNASCLVMT TEILRAMLYR GSEVLKEVAW VIFDEIHYMK
201: DRERGVVWEE SIIFLPPAIK MVFLSATMSN ATEFAEWICY LHKQPCHVVY TDFRPTPLQH YAFPMGGGGL YLVVDDNEQF REDSFVKMQD TFPKPKSNDG
301: KKSANGKSGG RGAKGGGGPG DSDVYKIVKM IMERKFEPVI IFSFSRRECE QHALSMSKLD FNTDEEKEVV EQVFNNAMQC LNEEDRSLPA IELMLPLLQR
401: GIAVHHSGLL PVIKELVELL FQEGLVKALF ATETFAMGLN MPAKTVVFTA VKKWDGDSHR YIGSGEYIQM SGRAGRRGKD ERGICIIMID EQMEMNTLRD
501: MMLGKPAPLL STFRLSYYTI LNLLSRAEGQ FTAEHVIRHS FHQFQHEKAL PDIGNKVSKL EEEAAILNAS GEAEVAEYHN LQFDIAKHEK KLMSEIIRPE
601: RVLCFLDTGR LVKIREGGTD WGWGVVVNVV KNSSVGTGSA SSHGGGYIVD TLLHCSTGFS ENGAKPKPCP PRAGEKGEMH VVPVQLPLIS ALSRLRISVP
701: SDLRPVEARQ SILLALQELS SRFPLGFPKL HPVKDMNIQD TEIVDLVSQI EEVEQKLLAH PMHKSEDDQQ IKSFQRKAEV NYEIQQLKSK MRDSQLQKFR
801: DELKNRSRVL KKLGHIDADG VVQVKGRAAC LIDTGDELLV TELMFNGTFN DLDHHQVAAL ASCFIPVDKS NEQVNLRNEL TKPLQQLQDS ARKIAEIQHE
901: CKLEIDVEEY VESTIRPFLM DVIYSWSKGA SFAEIIQMTD IFEGSIIRSA RRLDEFLNQL RAAAEAVGES SLESKFAAAS ESLRRGIMFA NSLYL

Arabidopsis Description

HEN2DExH-box ATP-dependent RNA helicase DExH10 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVW2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.