Factsheet for AT2G06990.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029783.1-P	Field mustard	cytosol	90.55	91.56
CDY41593	Canola	cytosol	90.95	91.32
CDY44724	Canola	cytosol	90.65	91.3
VIT_11s0065g00340.t01	Wine grape	cytosol	83.42	83.42
KRH41401	Soybean	nucleus	80.5	82.07
Solyc05g047520.2.1	Tomato	nucleus	76.58	81.41
KRH60115	Soybean	cytosol	79.1	81.39
PGSC0003DMT400035614	Potato	cytosol	80.8	80.72
Solyc12g017860.1.1	Tomato	nucleus	73.77	78.09
PGSC0003DMT400052548	Potato	cytosol	76.28	77.53
EES02351	Sorghum	nucleus	75.98	75.3
TraesCS4A01G216300.1	Wheat	cytosol	75.68	75.0
Zm00001d008777_P008	Maize	nucleus	75.58	74.75
TraesCS4D01G091400.1	Wheat	cytosol	75.88	74.6
Os11t0176200-01	Rice	nucleus	75.08	74.48
HORVU2Hr1G028060.7	Barley	cytosol	75.28	74.45
TraesCS2B01G179600.1	Wheat	cytosol	75.08	74.25
TraesCS2D01G159900.1	Wheat	cytosol	75.08	74.25
TraesCS2A01G154400.1	Wheat	cytosol	75.08	73.74
HORVU4Hr1G018990.9	Barley	plastid	74.57	71.55
GSMUA_Achr3P05450_001	Banana	nucleus	76.48	70.46
TraesCS4B01G094600.1	Wheat	nucleus	75.48	68.52
AT1G59760.1	Thale cress	cytosol, nucleus, plastid	47.04	47.37
AT3G46960.1	Thale cress	nucleus	34.67	25.61
AT1G70070.1	Thale cress	plastid	23.32	19.81
AT3G27730.2	Thale cress	nucleus	12.16	10.59
AT1G20960.1	Thale cress	cytosol	18.49	8.48
AT2G42270.1	Thale cress	cytosol	18.09	8.29
AT4G32700.2	Thale cress	nucleus	15.68	7.24
AT5G61140.2	Thale cress	plastid	15.68	7.23

Protein Annotations

Gene3D:1.10.3380.30	Gene3D:1.20.1500.20	MapMan:16.8.1.2.3.1	Gene3D:2.40.30.300	Gene3D:3.40.50.300	EntrezGene:815269
UniProt:A0A178VT15	ProteinID:AAC67203.2	ProteinID:AEC06028.1	ArrayExpress:AT2G06990	EnsemblPlantsGene:AT2G06990	RefSeq:AT2G06990
TAIR:AT2G06990	RefSeq:AT2G06990-TAIR-G	EnsemblPlants:AT2G06990.1	TAIR:AT2G06990.1	EMBL:AY050658	EMBL:BT005794
ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000003	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003724	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006397	GO:GO:0006401	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009653	GO:GO:0009791	GO:GO:0009908
GO:GO:0009987	GO:GO:0010093	GO:GO:0016070	GO:GO:0016607	GO:GO:0016787	GO:GO:0040029
GO:GO:0055087	GO:GO:0060149	GO:GO:0070478	Symbol:HEN2	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	RefSeq:NP_565338.1	ProteinID:OAP08511.1	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFAM:PF08148	PFAM:PF13234	PIRSF:PIRSF005198	PO:PO:0000013	PO:PO:0000037
PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185
PO:PO:0004507	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123
PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009
PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032
PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100
PO:PO:0020137	PO:PO:0025022	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR12131	PANTHER:PTHR12131:SF6
UniProt:Q9ZVW2	SMART:SM00487	SMART:SM00490	SMART:SM01142	SUPFAM:SSF52540	InterPro:Ski2-like
InterPro:Ski2_C	UniParc:UPI000000C743	InterPro:rRNA_proc-arch_dom	SEG:seg	:	:

Description

HEN2DExH-box ATP-dependent RNA helicase DExH10 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVW2]

Coordinates

chr2:+:2894904..2902020

Molecular Weight (calculated)

111896.0 Da

IEP (calculated)

6.405

GRAVY (calculated)

-0.324

Length

995 amino acids

Sequence
(BLAST)

001: MSAQMEEPET LGKRKESESS KLRSDETPTP EPRTKRRSLK RACVHEVAVP NDYTPTKEET IHGTLDNPVF NGDMAKTYPF KLDPFQSVSV ACLERKESIL
101: VSAHTSAGKT AVAEYAIAMA FRDKQRVIYT SPLKALSNQK YRELQHEFKD VGLMTGDVTL SPNASCLVMT TEILRAMLYR GSEVLKEVAW VIFDEIHYMK
201: DRERGVVWEE SIIFLPPAIK MVFLSATMSN ATEFAEWICY LHKQPCHVVY TDFRPTPLQH YAFPMGGGGL YLVVDDNEQF REDSFVKMQD TFPKPKSNDG
301: KKSANGKSGG RGAKGGGGPG DSDVYKIVKM IMERKFEPVI IFSFSRRECE QHALSMSKLD FNTDEEKEVV EQVFNNAMQC LNEEDRSLPA IELMLPLLQR
401: GIAVHHSGLL PVIKELVELL FQEGLVKALF ATETFAMGLN MPAKTVVFTA VKKWDGDSHR YIGSGEYIQM SGRAGRRGKD ERGICIIMID EQMEMNTLRD
501: MMLGKPAPLL STFRLSYYTI LNLLSRAEGQ FTAEHVIRHS FHQFQHEKAL PDIGNKVSKL EEEAAILNAS GEAEVAEYHN LQFDIAKHEK KLMSEIIRPE
601: RVLCFLDTGR LVKIREGGTD WGWGVVVNVV KNSSVGTGSA SSHGGGYIVD TLLHCSTGFS ENGAKPKPCP PRAGEKGEMH VVPVQLPLIS ALSRLRISVP
701: SDLRPVEARQ SILLALQELS SRFPLGFPKL HPVKDMNIQD TEIVDLVSQI EEVEQKLLAH PMHKSEDDQQ IKSFQRKAEV NYEIQQLKSK MRDSQLQKFR
801: DELKNRSRVL KKLGHIDADG VVQVKGRAAC LIDTGDELLV TELMFNGTFN DLDHHQVAAL ASCFIPVDKS NEQVNLRNEL TKPLQQLQDS ARKIAEIQHE
901: CKLEIDVEEY VESTIRPFLM DVIYSWSKGA SFAEIIQMTD IFEGSIIRSA RRLDEFLNQL RAAAEAVGES SLESKFAAAS ESLRRGIMFA NSLYL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.