Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G179600.1 | Wheat | cytosol | 98.72 | 99.4 |
| TraesCS2D01G159900.1 | Wheat | cytosol | 98.42 | 99.11 |
| HORVU2Hr1G028060.7 | Barley | cytosol | 97.53 | 98.21 |
| TraesCS4A01G216300.1 | Wheat | cytosol | 93.58 | 94.42 |
| Os11t0176200-01 | Rice | nucleus | 90.42 | 91.33 |
| EES02351 | Sorghum | nucleus | 87.36 | 88.15 |
| Zm00001d008777_P008 | Maize | nucleus | 87.36 | 87.97 |
| VIT_11s0065g00340.t01 | Wine grape | cytosol | 77.59 | 79.0 |
| KRH41401 | Soybean | nucleus | 74.43 | 77.25 |
| Solyc05g047520.2.1 | Tomato | nucleus | 71.37 | 77.24 |
| KRH60115 | Soybean | cytosol | 73.05 | 76.53 |
| PGSC0003DMT400035614 | Potato | cytosol | 75.22 | 76.51 |
| Bra029783.1-P | Field mustard | cytosol | 73.35 | 75.51 |
| CDY44724 | Canola | cytosol | 73.35 | 75.2 |
| CDY41593 | Canola | cytosol | 73.54 | 75.18 |
| Solyc12g017860.1.1 | Tomato | nucleus | 69.69 | 75.11 |
| AT2G06990.1 | Thale cress | nucleus | 73.74 | 75.08 |
| PGSC0003DMT400052548 | Potato | cytosol | 71.77 | 74.26 |
| GSMUA_Achr3P05450_001 | Banana | nucleus | 77.79 | 72.96 |
| TraesCS4A01G484300.2 | Wheat | cytosol | 47.58 | 48.44 |
| TraesCS7A01G010800.1 | Wheat | cytosol | 47.19 | 44.88 |
| TraesCS6A01G133400.3 | Wheat | cytosol | 34.25 | 25.38 |
| TraesCS6A01G312100.1 | Wheat | plastid | 23.49 | 19.77 |
| TraesCS4A01G136200.1 | Wheat | nucleus | 13.72 | 10.85 |
| TraesCS7A01G238700.1 | Wheat | cytosol | 17.08 | 8.19 |
| TraesCS6A01G024900.1 | Wheat | nucleus | 17.57 | 8.17 |
| TraesCS4A01G057200.1 | Wheat | mitochondrion, peroxisome | 15.79 | 7.7 |
| TraesCS1A01G323500.1 | Wheat | plastid | 14.91 | 7.32 |
Protein Annotations
| Gene3D:1.10.3380.30 | Gene3D:1.20.1500.20 | MapMan:16.8.1.2.3.1 | Gene3D:2.40.30.300 | Gene3D:3.40.50.300 | ncoils:Coil |
| InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003724 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0006139 | GO:GO:0006401 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016787 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF08148 |
| PFAM:PF13234 | PIRSF:PIRSF005198 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR12131 | PANTHER:PTHR12131:SF6 |
| SMART:SM00487 | SMART:SM00490 | SMART:SM01142 | SUPFAM:SSF52540 | InterPro:Ski2-like | InterPro:Ski2_C |
| EnsemblPlantsGene:TraesCS2A01G154400 | EnsemblPlants:TraesCS2A01G154400.1 | TIGR:cd00046 | TIGR:cd00079 | InterPro:rRNA_proc-arch_dom | SEG:seg |
Description
No Description!
Coordinates
chr2A:+:101905185..101912156
Molecular Weight (calculated)
113669.0 Da
IEP (calculated)
6.232
GRAVY (calculated)
-0.268
Length
1013 amino acids
Sequence
(BLAST)
(BLAST)
0001: MVGCIEEMEE VENSSKRKAP ELSSEDNSSA AVLDEQQSLP GSTAKRPNLA RSCIHEVAVP NGYDLSKDEA VHGTLSNPAF NGEMAKTYPF QLDPFQSISI
0101: ACLERNESVL VSAHTSAGKT AIAEYAIAMS FRDKQRVIYT SPLKALSNQK YRELTHEFSD VGLMTGDVTL QPNATCLVMT TEILRAMLYR GSEVIKEVGW
0201: VIFDEIHYMK DRERGVVWEE SIVFLPPAIK MVFLSATMSN ATEFAEWICN LHKQPCHVVY TDFRPTPLQH YVFPIGGSGL YLVVDENGQF REDNFLKLQD
0301: TFAKHPSQPD GRKGGGPKAS GRIAKGGNAS GTSDIYRIVK MIMDRKFQPV IIFSFSRREC EHHAMSMSKL DFNTQEEKDN IEQVFRSAIF CLSEEDRGLP
0401: AIELMLPLLK RGIAVHHSGL LPLIKELVEL LFQEGLVKAL FATETFAMGL NMPAKTVVFT SVKKWDGDSN RYIASGEYIQ MSGRAGRRGM DARGICVIMI
0501: DEKMEMSVIK DMVLGKPAPL ISTFRLSYYT ILNLLSRAEG QFTAEHVIRN SFHQFQYEKA LPEVVQKITK LENEATLLDS SGENDLAEYH KLGLDISELE
0601: KKIMSEMIRP ERALLYLVPG RLVKVRDGST DWGWGVVVNV VKKPPASSTL PPALSAPRNN YIVDTLLHCS SSSSENGANG PRSKPCPPRE GEKGEMHVVP
0701: VPLPLLSGLS SVRISIPTDL RPPEARQNIL FAVQELGKRY PQGLPKLHPI TDMGIEEPEL VDLVHKLDGL EEKLCSHPLN KSDQSEQQLS WYQRKAELNH
0801: EIQQLKSKMR DSQLQKFRDE LKNRSRVLKM LGHIDTDGVL QLKGRAACLI DTGDELLITE LMFNGTFNEL DHHQVASVVS CFVPCEKSSE QIRLRNELSK
0901: PMMQLSEAAR KIAEVQRECK LDVNVEEYVE STCKPYLMDV IYCWSKGATF GEVIEMTDIF EGSIIRLVRR LDEFLNQLKA AAEAVGEVNL EKKFGLASES
1001: LRRGIMFANS LYL
0101: ACLERNESVL VSAHTSAGKT AIAEYAIAMS FRDKQRVIYT SPLKALSNQK YRELTHEFSD VGLMTGDVTL QPNATCLVMT TEILRAMLYR GSEVIKEVGW
0201: VIFDEIHYMK DRERGVVWEE SIVFLPPAIK MVFLSATMSN ATEFAEWICN LHKQPCHVVY TDFRPTPLQH YVFPIGGSGL YLVVDENGQF REDNFLKLQD
0301: TFAKHPSQPD GRKGGGPKAS GRIAKGGNAS GTSDIYRIVK MIMDRKFQPV IIFSFSRREC EHHAMSMSKL DFNTQEEKDN IEQVFRSAIF CLSEEDRGLP
0401: AIELMLPLLK RGIAVHHSGL LPLIKELVEL LFQEGLVKAL FATETFAMGL NMPAKTVVFT SVKKWDGDSN RYIASGEYIQ MSGRAGRRGM DARGICVIMI
0501: DEKMEMSVIK DMVLGKPAPL ISTFRLSYYT ILNLLSRAEG QFTAEHVIRN SFHQFQYEKA LPEVVQKITK LENEATLLDS SGENDLAEYH KLGLDISELE
0601: KKIMSEMIRP ERALLYLVPG RLVKVRDGST DWGWGVVVNV VKKPPASSTL PPALSAPRNN YIVDTLLHCS SSSSENGANG PRSKPCPPRE GEKGEMHVVP
0701: VPLPLLSGLS SVRISIPTDL RPPEARQNIL FAVQELGKRY PQGLPKLHPI TDMGIEEPEL VDLVHKLDGL EEKLCSHPLN KSDQSEQQLS WYQRKAELNH
0801: EIQQLKSKMR DSQLQKFRDE LKNRSRVLKM LGHIDTDGVL QLKGRAACLI DTGDELLITE LMFNGTFNEL DHHQVASVVS CFVPCEKSSE QIRLRNELSK
0901: PMMQLSEAAR KIAEVQRECK LDVNVEEYVE STCKPYLMDV IYCWSKGATF GEVIEMTDIF EGSIIRLVRR LDEFLNQLKA AAEAVGEVNL EKKFGLASES
1001: LRRGIMFANS LYL
001: MSAQMEEPET LGKRKESESS KLRSDETPTP EPRTKRRSLK RACVHEVAVP NDYTPTKEET IHGTLDNPVF NGDMAKTYPF KLDPFQSVSV ACLERKESIL
101: VSAHTSAGKT AVAEYAIAMA FRDKQRVIYT SPLKALSNQK YRELQHEFKD VGLMTGDVTL SPNASCLVMT TEILRAMLYR GSEVLKEVAW VIFDEIHYMK
201: DRERGVVWEE SIIFLPPAIK MVFLSATMSN ATEFAEWICY LHKQPCHVVY TDFRPTPLQH YAFPMGGGGL YLVVDDNEQF REDSFVKMQD TFPKPKSNDG
301: KKSANGKSGG RGAKGGGGPG DSDVYKIVKM IMERKFEPVI IFSFSRRECE QHALSMSKLD FNTDEEKEVV EQVFNNAMQC LNEEDRSLPA IELMLPLLQR
401: GIAVHHSGLL PVIKELVELL FQEGLVKALF ATETFAMGLN MPAKTVVFTA VKKWDGDSHR YIGSGEYIQM SGRAGRRGKD ERGICIIMID EQMEMNTLRD
501: MMLGKPAPLL STFRLSYYTI LNLLSRAEGQ FTAEHVIRHS FHQFQHEKAL PDIGNKVSKL EEEAAILNAS GEAEVAEYHN LQFDIAKHEK KLMSEIIRPE
601: RVLCFLDTGR LVKIREGGTD WGWGVVVNVV KNSSVGTGSA SSHGGGYIVD TLLHCSTGFS ENGAKPKPCP PRAGEKGEMH VVPVQLPLIS ALSRLRISVP
701: SDLRPVEARQ SILLALQELS SRFPLGFPKL HPVKDMNIQD TEIVDLVSQI EEVEQKLLAH PMHKSEDDQQ IKSFQRKAEV NYEIQQLKSK MRDSQLQKFR
801: DELKNRSRVL KKLGHIDADG VVQVKGRAAC LIDTGDELLV TELMFNGTFN DLDHHQVAAL ASCFIPVDKS NEQVNLRNEL TKPLQQLQDS ARKIAEIQHE
901: CKLEIDVEEY VESTIRPFLM DVIYSWSKGA SFAEIIQMTD IFEGSIIRSA RRLDEFLNQL RAAAEAVGES SLESKFAAAS ESLRRGIMFA NSLYL
101: VSAHTSAGKT AVAEYAIAMA FRDKQRVIYT SPLKALSNQK YRELQHEFKD VGLMTGDVTL SPNASCLVMT TEILRAMLYR GSEVLKEVAW VIFDEIHYMK
201: DRERGVVWEE SIIFLPPAIK MVFLSATMSN ATEFAEWICY LHKQPCHVVY TDFRPTPLQH YAFPMGGGGL YLVVDDNEQF REDSFVKMQD TFPKPKSNDG
301: KKSANGKSGG RGAKGGGGPG DSDVYKIVKM IMERKFEPVI IFSFSRRECE QHALSMSKLD FNTDEEKEVV EQVFNNAMQC LNEEDRSLPA IELMLPLLQR
401: GIAVHHSGLL PVIKELVELL FQEGLVKALF ATETFAMGLN MPAKTVVFTA VKKWDGDSHR YIGSGEYIQM SGRAGRRGKD ERGICIIMID EQMEMNTLRD
501: MMLGKPAPLL STFRLSYYTI LNLLSRAEGQ FTAEHVIRHS FHQFQHEKAL PDIGNKVSKL EEEAAILNAS GEAEVAEYHN LQFDIAKHEK KLMSEIIRPE
601: RVLCFLDTGR LVKIREGGTD WGWGVVVNVV KNSSVGTGSA SSHGGGYIVD TLLHCSTGFS ENGAKPKPCP PRAGEKGEMH VVPVQLPLIS ALSRLRISVP
701: SDLRPVEARQ SILLALQELS SRFPLGFPKL HPVKDMNIQD TEIVDLVSQI EEVEQKLLAH PMHKSEDDQQ IKSFQRKAEV NYEIQQLKSK MRDSQLQKFR
801: DELKNRSRVL KKLGHIDADG VVQVKGRAAC LIDTGDELLV TELMFNGTFN DLDHHQVAAL ASCFIPVDKS NEQVNLRNEL TKPLQQLQDS ARKIAEIQHE
901: CKLEIDVEEY VESTIRPFLM DVIYSWSKGA SFAEIIQMTD IFEGSIIRSA RRLDEFLNQL RAAAEAVGES SLESKFAAAS ESLRRGIMFA NSLYL
Arabidopsis Description
HEN2DExH-box ATP-dependent RNA helicase DExH10 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVW2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.