Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G168700.1 | Wheat | nucleus | 97.42 | 97.42 |
| TraesCS4D01G171000.1 | Wheat | nucleus | 93.44 | 97.4 |
| HORVU4Hr1G049830.57 | Barley | nucleus | 83.53 | 95.37 |
| Os02t0617500-01 | Rice | cytosol | 43.72 | 89.89 |
| OQU85316 | Sorghum | nucleus | 74.24 | 73.44 |
| Zm00001d051111_P001 | Maize | nucleus | 73.77 | 73.09 |
| PGSC0003DMT400001251 | Potato | nucleus | 15.07 | 69.42 |
| GSMUA_Achr1P12000_001 | Banana | cytosol, nucleus, plastid | 52.93 | 61.41 |
| CDY49767 | Canola | nucleus | 50.66 | 57.38 |
| Bra033025.1-P | Field mustard | nucleus | 48.87 | 57.22 |
| CDY03992 | Canola | nucleus | 50.51 | 57.0 |
| KRH07179 | Soybean | endoplasmic reticulum, plastid | 51.76 | 55.71 |
| AT3G27730.2 | Thale cress | nucleus | 49.41 | 55.38 |
| Solyc02g086580.2.1 | Tomato | cytosol | 51.05 | 54.32 |
| VIT_14s0066g00880.t01 | Wine grape | nucleus | 53.71 | 53.96 |
| PGSC0003DMT400001255 | Potato | cytosol, mitochondrion | 23.18 | 40.35 |
| TraesCS4A01G484300.2 | Wheat | cytosol | 11.01 | 14.17 |
| TraesCS4A01G216300.1 | Wheat | cytosol | 10.93 | 13.94 |
| TraesCS2A01G154400.1 | Wheat | cytosol | 10.85 | 13.72 |
| TraesCS7A01G010800.1 | Wheat | cytosol | 10.85 | 13.05 |
| TraesCS6A01G133400.3 | Wheat | cytosol | 12.57 | 11.78 |
| TraesCS4A01G057200.1 | Wheat | mitochondrion, peroxisome | 18.5 | 11.41 |
| TraesCS6A01G312100.1 | Wheat | plastid | 10.69 | 11.38 |
| TraesCS6A01G024900.1 | Wheat | nucleus | 18.97 | 11.16 |
| TraesCS7A01G238700.1 | Wheat | cytosol | 17.88 | 10.84 |
| TraesCS1A01G323500.1 | Wheat | plastid | 16.39 | 10.18 |
Protein Annotations
| Gene3D:1.10.10.2530 | Gene3D:1.10.150.20 | Gene3D:1.10.3380.10 | MapMan:13.3.6.5.1.1 | Gene3D:3.40.50.300 | InterPro:DEAD/DEAH_box_helicase_dom |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 |
| PFAM:PF02889 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF388 | SMART:SM00487 |
| SMART:SM00490 | SMART:SM00973 | SUPFAM:SSF158702 | SUPFAM:SSF52540 | InterPro:Sec63-dom | EnsemblPlantsGene:TraesCS4A01G136200 |
| EnsemblPlants:TraesCS4A01G136200.1 | TIGR:cd00046 | TIGR:cd00079 | : | : | : |
Description
No Description!
Coordinates
chr4A:-:190189242..190197985
Molecular Weight (calculated)
143265.0 Da
IEP (calculated)
8.125
GRAVY (calculated)
-0.318
Length
1281 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAAMGPLGDS YALRCVSDLP PPFRPVFGFR YFNSLQSECF PVCFLSDVNM VVSAPTGSGK TVLFELCILR LLSRFLTTDW WFNLLKGTLK TIYIAPMKAL
0101: VQEKMRDWKV KLGSLGINCL EMTGDSEFFN KKAIHDSDLI LTTPEKFDSM SRHGVRDGGL GFFSDIALVL IDEVHLLNDP RGAALEAVVS RIKMLSRLGN
0201: MKSAPLANVR FIAVSATISN AEDIAEWLLA PPEGIKRFGE EMRPVKLTTK VLGYAPAKND FLFERRLQSF IFDILMQHSR GKSALVFCST RKGAQEAAQC
0301: LSQTAGSLGY SNPFMKSMQQ YEHLREASLT CSDKQLQSCI VYGVGFHNGG LCLKDRSLVE GLFLKGDLQI LCTTNTLAHG INLPAHTVVI KSTQFFNKEK
0401: GSYVEYDRSM VLQMCGRAGR PPFDDTGTVV IMTRRETVHL YENLLSGCEM VESQLLPCAV EHLNAEIVQL TVSDITLAIE WLKCSYLYIR IKKNPEHYGI
0501: KRGIPRDLLE KQMRDICVEK IHELGEYGLI WTDGDGFSLK PLEPGRLMTK FYLKFDTMKL IVKASACCSL EDLLHIICHS AEISWIQLRR NEKKTLNDIN
0601: SDKEGRLRFH VVSENGKKKK RIQTREDKIF VLANDCLTGD PLMHDLSLNQ ETNSICSNGC RIAKCMKEYF IYKRSYRSAI NSMLLAKCLD QKLWENSLFL
0701: LKQLPGIGIV TAKALKTAGV DSFESLATAD ARKLESATGR NYPFGNQIKE SLSSLPPKID VQIEDAGNRQ GKSTITVTLS RQSQAVRSSK QNYVDMIVGS
0801: EEDNMILFHE KIRAREFSSP YSVKLLVPCP QSARVTLKVD LIFEEHVGID IHKKHVVSRE DDFHVTKAYG TEKQKPLISL PADICLVSSR TAETSPAQPH
0901: IGWSPLSKEV NVIEDDDGAN VPDKVDNMPG TRTFNNLASL EVPSFDLMLE EDNGDMQDVS FPEPAKAECR SATSNTIFDH IRKKSRDFPT LMLSKSMDGS
1001: YEPLILKKMK TSRGQFNLDQ GILHANEVTP MDSEHSELRV SPTNTAEKCW RILSRTSEKS RSLFAEKVYS PFEKSKSLNR IPDENSVQFA DRRGSLSEKS
1101: KSLSRIPDEN SVQFSVRTDS VSEKTKILWT AADENSHQFA GKRDSPSEKS KILMRPPDDS TLQFAGRRGS PSEKSNVLSR TLDENSLQFA AKRDSSSAKS
1201: NVLSKTPDVD SAQFAGGRDN PPEKNKLCSS NLFPDFQAMS QAPAAVQPLR IQDYCKDILA SSKGSGTGEP FLGFKSVFSF L
0101: VQEKMRDWKV KLGSLGINCL EMTGDSEFFN KKAIHDSDLI LTTPEKFDSM SRHGVRDGGL GFFSDIALVL IDEVHLLNDP RGAALEAVVS RIKMLSRLGN
0201: MKSAPLANVR FIAVSATISN AEDIAEWLLA PPEGIKRFGE EMRPVKLTTK VLGYAPAKND FLFERRLQSF IFDILMQHSR GKSALVFCST RKGAQEAAQC
0301: LSQTAGSLGY SNPFMKSMQQ YEHLREASLT CSDKQLQSCI VYGVGFHNGG LCLKDRSLVE GLFLKGDLQI LCTTNTLAHG INLPAHTVVI KSTQFFNKEK
0401: GSYVEYDRSM VLQMCGRAGR PPFDDTGTVV IMTRRETVHL YENLLSGCEM VESQLLPCAV EHLNAEIVQL TVSDITLAIE WLKCSYLYIR IKKNPEHYGI
0501: KRGIPRDLLE KQMRDICVEK IHELGEYGLI WTDGDGFSLK PLEPGRLMTK FYLKFDTMKL IVKASACCSL EDLLHIICHS AEISWIQLRR NEKKTLNDIN
0601: SDKEGRLRFH VVSENGKKKK RIQTREDKIF VLANDCLTGD PLMHDLSLNQ ETNSICSNGC RIAKCMKEYF IYKRSYRSAI NSMLLAKCLD QKLWENSLFL
0701: LKQLPGIGIV TAKALKTAGV DSFESLATAD ARKLESATGR NYPFGNQIKE SLSSLPPKID VQIEDAGNRQ GKSTITVTLS RQSQAVRSSK QNYVDMIVGS
0801: EEDNMILFHE KIRAREFSSP YSVKLLVPCP QSARVTLKVD LIFEEHVGID IHKKHVVSRE DDFHVTKAYG TEKQKPLISL PADICLVSSR TAETSPAQPH
0901: IGWSPLSKEV NVIEDDDGAN VPDKVDNMPG TRTFNNLASL EVPSFDLMLE EDNGDMQDVS FPEPAKAECR SATSNTIFDH IRKKSRDFPT LMLSKSMDGS
1001: YEPLILKKMK TSRGQFNLDQ GILHANEVTP MDSEHSELRV SPTNTAEKCW RILSRTSEKS RSLFAEKVYS PFEKSKSLNR IPDENSVQFA DRRGSLSEKS
1101: KSLSRIPDEN SVQFSVRTDS VSEKTKILWT AADENSHQFA GKRDSPSEKS KILMRPPDDS TLQFAGRRGS PSEKSNVLSR TLDENSLQFA AKRDSSSAKS
1201: NVLSKTPDVD SAQFAGGRDN PPEKNKLCSS NLFPDFQAMS QAPAAVQPLR IQDYCKDILA SSKGSGTGEP FLGFKSVFSF L
0001: MDTHTLKSVS DLPGNFRSAF SFRYFNSLQS ECFPLCFHSD INMIISAPTG SGKTVLFELC ILRLFSKSIS KEGSFLHAKG ALKTVYISPS KALVQEKLRD
0101: WNQKFNSWGI SCLELTGDNE TYSTKNIQDA DIILTTPEKF DAVSRYRVTS GGLGFFSDIA LVLIDEVHLL NDPRGAALEA IVSRLKILSS NHELRSSTLA
0201: SVRLLAVSAT IPNIEDLAEW LKVPTAGIKR FGEEMRPVKL TTKVFGYAAA KNDFLFEKRL QNYIYDILMQ YSKGKSALVF CSTRKGAQEA AQKLAQTAMT
0301: YGYSNPFIKS REQLERLREA SPMCSDKQMQ SYILQGVGYH NGGLCQKDRS LVEGLFLNGD IQVICTTNTL AHGINLPAHT VVIKSTQHFN KEKGHYMEYD
0401: RSTLLQMSGR AGRPPFDDTG MVIIMTRRET VHLYENLLNG CEVVESQLLP CLIEHLTAEI VQLTISDITR AIEWMKCSYL YVRMKKNPEN YAIKKGIPKD
0501: RVEKHLQELC LQKINELSQY QMIWTDTDGF VLKPEEPGRL MTKYYLKFET MKYIINTPTS YSLDEALHIV CHAEEISWIQ LRRNEKKTLN DVNADKEGRL
0601: RFHINDNKGK RKKRIQTREE KLFVLANDWL TGDPSVHDLS MTQDANSICS NGSRIARCMK EYFIYKKNYK GTLSSTLLAK SLYQKLWDDS PYLLKQLPGI
0701: GMVTAKALHS MGVRSFEALA EADPRRIEIV TGRKYPFGNT IKESLSSLPP KVEIKVEEVD CQKQGISKLA VTLSRVSQPL QSTKRHYADL IVGSEEENLI
0801: HFHEKIRMED FSSPYSVTVL LERPHQQTKV TVKADLIFEE YIGIDLHETL LLKKANNNKV NYKSENRMPQ YYPPMASACI ADDDNPVTSG PSNRKDKKDD
0901: MPSFKLIDDD SEEEKEPYVT MEEDDCVIIN EHTVFDHIRE KAKCFPSLNP LNPTSSPASG KSILKRKSLV ENNSPELDPL FQYDSVFDLP TNTKDIKQSA
1001: QQITSPGYAS FAEKTETERP FSDETIFNYI RKRSKNSPAL ATSKIENPIT ISSQEGRNAE ISPYRTYGLL VSPATKIPRI TSDAPSEILS FDISMVKRSD
1101: TSLEQTKGFC STLAGKSNVS DSFLGFKSIF SFL
0101: WNQKFNSWGI SCLELTGDNE TYSTKNIQDA DIILTTPEKF DAVSRYRVTS GGLGFFSDIA LVLIDEVHLL NDPRGAALEA IVSRLKILSS NHELRSSTLA
0201: SVRLLAVSAT IPNIEDLAEW LKVPTAGIKR FGEEMRPVKL TTKVFGYAAA KNDFLFEKRL QNYIYDILMQ YSKGKSALVF CSTRKGAQEA AQKLAQTAMT
0301: YGYSNPFIKS REQLERLREA SPMCSDKQMQ SYILQGVGYH NGGLCQKDRS LVEGLFLNGD IQVICTTNTL AHGINLPAHT VVIKSTQHFN KEKGHYMEYD
0401: RSTLLQMSGR AGRPPFDDTG MVIIMTRRET VHLYENLLNG CEVVESQLLP CLIEHLTAEI VQLTISDITR AIEWMKCSYL YVRMKKNPEN YAIKKGIPKD
0501: RVEKHLQELC LQKINELSQY QMIWTDTDGF VLKPEEPGRL MTKYYLKFET MKYIINTPTS YSLDEALHIV CHAEEISWIQ LRRNEKKTLN DVNADKEGRL
0601: RFHINDNKGK RKKRIQTREE KLFVLANDWL TGDPSVHDLS MTQDANSICS NGSRIARCMK EYFIYKKNYK GTLSSTLLAK SLYQKLWDDS PYLLKQLPGI
0701: GMVTAKALHS MGVRSFEALA EADPRRIEIV TGRKYPFGNT IKESLSSLPP KVEIKVEEVD CQKQGISKLA VTLSRVSQPL QSTKRHYADL IVGSEEENLI
0801: HFHEKIRMED FSSPYSVTVL LERPHQQTKV TVKADLIFEE YIGIDLHETL LLKKANNNKV NYKSENRMPQ YYPPMASACI ADDDNPVTSG PSNRKDKKDD
0901: MPSFKLIDDD SEEEKEPYVT MEEDDCVIIN EHTVFDHIRE KAKCFPSLNP LNPTSSPASG KSILKRKSLV ENNSPELDPL FQYDSVFDLP TNTKDIKQSA
1001: QQITSPGYAS FAEKTETERP FSDETIFNYI RKRSKNSPAL ATSKIENPIT ISSQEGRNAE ISPYRTYGLL VSPATKIPRI TSDAPSEILS FDISMVKRSD
1101: TSLEQTKGFC STLAGKSNVS DSFLGFKSIF SFL
Arabidopsis Description
RCKDNA helicase ROCK-N-ROLLERS [Source:UniProtKB/TrEMBL;Acc:A0A1I9LN50]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.