CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051111_P001	Maize	nucleus	89.88	90.02
Os02t0617500-01	Rice	cytosol	41.47	86.2
HORVU4Hr1G049830.57	Barley	nucleus	67.18	77.54
TraesCS4D01G171000.1	Wheat	nucleus	71.89	75.75
TraesCS4B01G168700.1	Wheat	nucleus	73.67	74.47
TraesCS4A01G136200.1	Wheat	nucleus	73.44	74.24
PGSC0003DMT400001251	Potato	nucleus	15.44	71.94
GSMUA_Achr1P12000_001	Banana	cytosol, nucleus, plastid	51.74	60.69
CDY49767	Canola	nucleus	49.81	57.03
Bra033025.1-P	Field mustard	nucleus	47.95	56.76
CDY03992	Canola	nucleus	49.5	56.48
KRH07179	Soybean	endoplasmic reticulum, plastid	50.89	55.38
Solyc02g086580.2.1	Tomato	cytosol	51.12	54.98
VIT_14s0066g00880.t01	Wine grape	nucleus	53.59	54.43
AT3G27730.2	Thale cress	nucleus	47.95	54.33
PGSC0003DMT400001255	Potato	cytosol, mitochondrion	23.63	41.58
EER87693	Sorghum	cytosol	10.58	13.69
EES02351	Sorghum	nucleus	10.12	13.05
OQU85441	Sorghum	plastid	10.35	11.26
KXG39883	Sorghum	mitochondrion	18.07	11.23
EER99779	Sorghum	cytosol	18.15	10.77
EES04337	Sorghum	cytosol	17.92	10.68
KXG29518	Sorghum	cytosol	11.12	10.5
OQU79067	Sorghum	plastid	16.68	10.39
KXG37223	Sorghum	cytosol	17.37	10.21

Protein Annotations

Gene3D:1.10.10.2530	Gene3D:1.10.150.20	Gene3D:1.10.3380.10	MapMan:13.3.6.5.1.1	Gene3D:3.40.50.300	UniProt:A0A1Z5RPK0
InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	EnsemblPlants:OQU85316	ProteinID:OQU85316
ProteinID:OQU85316.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF02889	PFscan:PS51192
PFscan:PS51194	PANTHER:PTHR24031	PANTHER:PTHR24031:SF388	SMART:SM00487	SMART:SM00490	SMART:SM00973
EnsemblPlantsGene:SORBI_3004G215600	SUPFAM:SSF158702	SUPFAM:SSF52540	InterPro:Sec63-dom	UniParc:UPI000B4250E1	SEG:seg

Description

hypothetical protein

Coordinates

chr4:+:56543010..56557899

Molecular Weight (calculated)

144438.0 Da

IEP (calculated)

8.146

GRAVY (calculated)

-0.271

Length

1295 amino acids

Sequence
(BLAST)

0001: MGSLADPYAL RCVSDLPPPF RSVFRFRYFN SLQSECFHVC FFSDVNMVIS APTGSGKTVL FELCILRLLS RFLSPDWRFN LNKGTLKTIY IAPSKALVQE
0101: KLRDWNMKLG PLGINCLEMT GDSEFYNNKA IHDADLILTT PEKFDSMSRH GIKGGRLGFF SDIALVLIDE VHLLNDPRGA ALEAVVSRIK MLSRNDNMKS
0201: FPLANVRFIA VSATIPNIED IAQWLLAPPE GIKRFGEEMR PVKLTTKVFG YAPAKNDFLF ERRLQSFIYD ILMQHSRGKS ALIFCSTRKG AQEAAQCLSQ
0301: TGASLGYSNP FMKSMQQYEH LKEASLTCSD KQLQACIVHG VGFHNGGLCL KDRGLVEGLF LKGDLQVLCT TNTLAHGINL PAHTVVIKST QFFNKEKGLY
0401: VEYERSMVLQ MCGRAGRAPF DDTGTIIIMT RKETVHLYEN LLNGCEMVES QLLPCAVEHL NAEIVQLTVS DIILAVEWIK CSYLYTRIRK NPENYGVKRG
0501: TPQDLLEKQI QDICVQKIHE LVDYGLILTD EGAFVLQPLE PGRLMAKFYL KFDTMKLIVK ASASCSMEDL LHVICHSAEI TWIQLRRKDK KILNDINADK
0601: DGRLLFHIVT ENGKRKKRVQ TREEKIFLLA NDCLTGDPLI HDLSLNQETN SICSNGCRIA KCMREYFIYK KNYRSAINSM ILANSLHQKL WESSPFLLKQ
0701: LPGIGIVTAK ALKTAGIHSF ETLATADARK IELATGRNYQ FGNHIKESMS SLPPKIDIDI EETGNRFGKT TITVTLTRLS QAVPSSKRSC ADMVVASEED
0801: NVILFHENIR TREFHSPYSV KVFVPCPQNA RVTLKVDLIF EGYVGLDVHK KHVVSREDGL YVTKEHVIDK LEPAYNLPSE ICLVSSRTTR TSRSQSYTEQ
0901: SPLSKEVYVI EDDGVAVSAL EKADNVLGTR KFNNLASLEV PNFDLLPEEE YGAASAPGPE QAECKSATDN TIFDHIRKKS KEFPTLMVSK SMDSSYEPLI
1001: LKKMKISRDQ FEVEHGCLHA DEATTLDFEP VEPRVSLTNT AEKCRGILGR SSEKSRMLFG IMDSPSEKST MLSTTPDKSS LRNAGGKESP LEKSKVLSTS
1101: AENSLQFAVR GVNSSEKSKM LTTPDKSSLV SAGGKESPLE KSEVVSTSAE NSLQFAARHV NSSENSKMLT TPDKSSLVFA GGKDSPLEKS KILISTPVEY
1201: PLKKGNPGEN PFKTGTPVEN SPQFAAQCDS PSKKRKSCIS SPLPCLQAVQ CIEQVRAAGQ PFDIQEYVKE ISRSRKNSQG GDPFAGYKSI FSFLY

Best Arabidopsis Sequence Match ( AT3G27730.1 )
(BLAST)

0001: MDTHTLKSVS DLPGNFRSAF SFRYFNSLQS ECFPLCFHSD INMIISAPTG SGKTVLFELC ILRLFSKSIS KEGSFLHAKG ALKTVYISPS KALVQEKLRD
0101: WNQKFNSWGI SCLELTGDNE TYSTKNIQDA DIILTTPEKF DAVSRYRVTS GGLGFFSDIA LVLIDEVHLL NDPRGAALEA IVSRLKILSS NHELRSSTLA
0201: SVRLLAVSAT IPNIEDLAEW LKVPTAGIKR FGEEMRPVKL TTKVFGYAAA KNDFLFEKRL QNYIYDILMQ YSKGKSALVF CSTRKGAQEA AQKLAQTAMT
0301: YGYSNPFIKS REQLERLREA SPMCSDKQMQ SYILQGVGYH NGGLCQKDRS LVEGLFLNGD IQVICTTNTL AHGINLPAHT VVIKSTQHFN KEKGHYMEYD
0401: RSTLLQMSGR AGRPPFDDTG MVIIMTRRET VHLYENLLNG CEVVESQLLP CLIEHLTAEI VQLTISDITR AIEWMKCSYL YVRMKKNPEN YAIKKGIPKD
0501: RVEKHLQELC LQKINELSQY QMIWTDTDGF VLKPEEPGRL MTKYYLKFET MKYIINTPTS YSLDEALHIV CHAEEISWIQ LRRNEKKTLN DVNADKEGRL
0601: RFHINDNKGK RKKRIQTREE KLFVLANDWL TGDPSVHDLS MTQDANSICS NGSRIARCMK EYFIYKKNYK GTLSSTLLAK SLYQKLWDDS PYLLKQLPGI
0701: GMVTAKALHS MGVRSFEALA EADPRRIEIV TGRKYPFGNT IKESLSSLPP KVEIKVEEVD CQKQGISKLA VTLSRVSQPL QSTKRHYADL IVGSEEENLI
0801: HFHEKIRMED FSSPYSVTVL LERPHQQTKV TVKADLIFEE YIGIDLHETL LLKKANNNKV NYKSENRMPQ YYPPMASACI ADDDNPVTSG PSNRKDKKDD
0901: MPSFKLIDDD SEEEKEPYVT MEEDDCVIIN EHTVFDHIRE KAKCFPSLNP LNPTSSPASG KSILKRKSLV ENNSPELDPL FQYDSVFDLP TNTKDIKQSA
1001: QQITSPGYAS FAEKTETERP FSDETIFNYI RKRSKNSPAL ATSKIENPIT ISSQEGRNAE ISPYRTYGLL VSPATKIPRI TSDAPSEILS FDISMVKRSD
1101: TSLEQTKGFC STLAGKSNVS DSFLGFKSIF SFL

Arabidopsis Description

RCKDNA helicase ROCK-N-ROLLERS [Source:UniProtKB/TrEMBL;Acc:A0A1I9LN50]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.