Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400001251 | Potato | nucleus | 33.07 | 74.1 |
| HORVU4Hr1G049830.57 | Barley | nucleus | 89.73 | 49.82 |
| TraesCS4D01G171000.1 | Wheat | nucleus | 89.57 | 45.4 |
| TraesCS4A01G136200.1 | Wheat | nucleus | 89.89 | 43.72 |
| TraesCS4B01G168700.1 | Wheat | nucleus | 89.57 | 43.56 |
| GSMUA_Achr1P12000_001 | Banana | cytosol, nucleus, plastid | 76.73 | 43.3 |
| OQU85316 | Sorghum | nucleus | 86.2 | 41.47 |
| Zm00001d051111_P001 | Maize | nucleus | 85.87 | 41.38 |
| CDY49767 | Canola | nucleus | 73.35 | 40.41 |
| CDY03992 | Canola | nucleus | 72.87 | 40.0 |
| AT3G27730.2 | Thale cress | nucleus | 72.71 | 39.63 |
| Bra033025.1-P | Field mustard | nucleus | 69.5 | 39.58 |
| KRH07179 | Soybean | endoplasmic reticulum, plastid | 74.32 | 38.91 |
| Solyc02g086580.2.1 | Tomato | cytosol | 73.84 | 38.21 |
| VIT_14s0066g00880.t01 | Wine grape | nucleus | 76.4 | 37.33 |
| PGSC0003DMT400001255 | Potato | cytosol, mitochondrion | 14.29 | 12.09 |
| Os11t0176200-01 | Rice | nucleus | 17.82 | 11.07 |
| Os02t0739000-01 | Rice | plastid, vacuole | 17.82 | 9.41 |
| Os12t0279000-01 | Rice | mitochondrion | 11.4 | 9.15 |
| Os03t0743800-00 | Rice | nucleus | 27.61 | 8.02 |
| Os12t0291000-00 | Rice | nucleus | 24.08 | 7.31 |
| Os02t0106966-00 | Rice | nucleus | 0.48 | 1.09 |
| Os03t0213400-01 | Rice | cytosol, nucleus | 1.61 | 0.88 |
| Os02t0160000-01 | Rice | cytosol, plasma membrane | 0.0 | 0.0 |
| Os02t0108700-00 | Rice | cytosol | 0.0 | 0.0 |
| Os02t0107000-01 | Rice | cytosol, nucleus | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.10.2530 | Gene3D:1.10.3380.10 | MapMan:13.3.6.5.1.1 | Gene3D:3.40.50.300 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom |
| GO:GO:0000003 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 |
| GO:GO:0004004 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 | GO:GO:0005730 | GO:GO:0005737 | GO:GO:0006139 |
| GO:GO:0006259 | GO:GO:0007049 | GO:GO:0007131 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0010501 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0051321 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR014001 | EnsemblPlantsGene:Os02g0617500 | EnsemblPlants:Os02t0617500-01 | InterPro:P-loop_NTPase | PFAM:PF00270 |
| PFAM:PF00271 | PFAM:PF02889 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF388 |
| SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | InterPro:Sec63-dom | UniParc:UPI000393A105 | : |
Description
RICE MEIOTIC CROSSOVER 1DEAD-like helicase, N-terminal domain containing protein. (Os02t0617500-01)
Coordinates
chr2:+:24518341..24524346
Molecular Weight (calculated)
70379.2 Da
IEP (calculated)
8.265
GRAVY (calculated)
-0.040
Length
623 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAMGHLGDP YALRSVADLP PPFRSVFGFR YFNSLQSECF PACFLSDVNM VISAPTGSGK TVLFELCILR LLSRFLSSEW RFNLIKGTLK TIYIAPMKAL
101: VQEKLRDWNM KLGSLGISCL EMTGDNEFYN TKSIHDADLI LTTPEKFDSV SRHGIRDGGL GFFSDIALVL IDEVHLLNDP RGAALEAIVS RIKMLSRLGT
201: MKIAPLANVR FIAVSATIPN IEDIAEWLAV PSEGIKRFGE EMRPVKLTTK VFGYAPARND FLFERRLQSF IFDILMQHSR GKSALVFCST RKGAQEAAQC
301: LSQTASSLGY SNPFMKSMQQ YEHLKEAALT CSDKQLQACL VHGVGYHNGG LCLKDRSVVE GLFLKGDIQI LCTTNTLAHG INLPAHTVVI KSTQFFNKEK
401: GLYVEYERSM VLQMCGRAGR PPFDDTGTII IMTRRETVHL YENLLNGCEM VESQLLPCAV EHLNAEIVQL TVSDITLAIE WLKCSYLYIR IKKNPQHYGI
501: KKEIPRELLE KQMKDICVEK IHELGEYGLI WTDEDGFLLK PLEPGRLMTK FYLKFDTMKL IVKASACCTL EDLLHIICHS AEITWIQLRR NEKKLLNEIN
601: ADKEGRLWFH VVGANGKRKK RIQ
101: VQEKLRDWNM KLGSLGISCL EMTGDNEFYN TKSIHDADLI LTTPEKFDSV SRHGIRDGGL GFFSDIALVL IDEVHLLNDP RGAALEAIVS RIKMLSRLGT
201: MKIAPLANVR FIAVSATIPN IEDIAEWLAV PSEGIKRFGE EMRPVKLTTK VFGYAPARND FLFERRLQSF IFDILMQHSR GKSALVFCST RKGAQEAAQC
301: LSQTASSLGY SNPFMKSMQQ YEHLKEAALT CSDKQLQACL VHGVGYHNGG LCLKDRSVVE GLFLKGDIQI LCTTNTLAHG INLPAHTVVI KSTQFFNKEK
401: GLYVEYERSM VLQMCGRAGR PPFDDTGTII IMTRRETVHL YENLLNGCEM VESQLLPCAV EHLNAEIVQL TVSDITLAIE WLKCSYLYIR IKKNPQHYGI
501: KKEIPRELLE KQMKDICVEK IHELGEYGLI WTDEDGFLLK PLEPGRLMTK FYLKFDTMKL IVKASACCTL EDLLHIICHS AEITWIQLRR NEKKLLNEIN
601: ADKEGRLWFH VVGANGKRKK RIQ
0001: MDTHTLKSVS DLPGNFRSAF SFRYFNSLQS ECFPLCFHSD INMIISAPTG SGKTVLFELC ILRLFSKSIS KEGSFLHAKG ALKTVYISPS KALVQEKLRD
0101: WNQKFNSWGI SCLELTGDNE TYSTKNIQDA DIILTTPEKF DAVSRYRVTS GGLGFFSDIA LVLIDEVHLL NDPRGAALEA IVSRLKILSS NHELRSSTLA
0201: SVRLLAVSAT IPNIEDLAEW LKVPTAGIKR FGEEMRPVKL TTKVFGYAAA KNDFLFEKRL QNYIYDILMQ YSKGKSALVF CSTRKGAQEA AQKLAQTAMT
0301: YGYSNPFIKS REQLERLREA SPMCSDKQMQ SYILQGVGYH NGGLCQKDRS LVEGLFLNGD IQVICTTNTL AHGINLPAHT VVIKSTQHFN KEKGHYMEYD
0401: RSTLLQMSGR AGRPPFDDTG MVIIMTRRET VHLYENLLNG CEVVESQLLP CLIEHLTAEI VQLTISDITR AIEWMKCSYL YVRMKKNPEN YAIKKGIPKD
0501: RVEKHLQELC LQKINELSQY QMIWTDTDGF VLKPEEPGRL MTKYYLKFET MKYIINTPTS YSLDEALHIV CHAEEISWIQ LRRNEKKTLN DVNADKEGRL
0601: RFHINDNKGK RKKRIQTREE KLFVLANDWL TGDPSVHDLS MTQDANSICS NGSRIARCMK EYFIYKKNYK GTLSSTLLAK SLYQKLWDDS PYLLKQLPGI
0701: GMVTAKALHS MGVRSFEALA EADPRRIEIV TGRKYPFGNT IKESLSSLPP KVEIKVEEVD CQKQGISKLA VTLSRVSQPL QSTKRHYADL IVGSEEENLI
0801: HFHEKIRMED FSSPYSVTVL LERPHQQTKV TVKADLIFEE YIGIDLHETL LLKKANNNKV NYKSENRMPQ YYPPMASACI ADDDNPVTSG PSNRKDKKDD
0901: MPSFKLIDDD SEEEKEPYVT MEEDDCVIIN EHTVFDHIRE KAKCFPSLNP LNPTSSPASG KSILKRKSLV ENNSPELDPL FQYDSVFDLP TNTKDIKQSA
1001: QQITSPGYAS FAEKTETERP FSDETIFNYI RKRSKNSPAL ATSKIENPIT ISSQEGRNAE ISPYRTYGLL VSPATKIPRI TSDAPSEILS FDISMVKRSD
1101: TSLEQTKGFC STLAEVINHS SQIGEVSHHL HNFFMIILIK RLF
0101: WNQKFNSWGI SCLELTGDNE TYSTKNIQDA DIILTTPEKF DAVSRYRVTS GGLGFFSDIA LVLIDEVHLL NDPRGAALEA IVSRLKILSS NHELRSSTLA
0201: SVRLLAVSAT IPNIEDLAEW LKVPTAGIKR FGEEMRPVKL TTKVFGYAAA KNDFLFEKRL QNYIYDILMQ YSKGKSALVF CSTRKGAQEA AQKLAQTAMT
0301: YGYSNPFIKS REQLERLREA SPMCSDKQMQ SYILQGVGYH NGGLCQKDRS LVEGLFLNGD IQVICTTNTL AHGINLPAHT VVIKSTQHFN KEKGHYMEYD
0401: RSTLLQMSGR AGRPPFDDTG MVIIMTRRET VHLYENLLNG CEVVESQLLP CLIEHLTAEI VQLTISDITR AIEWMKCSYL YVRMKKNPEN YAIKKGIPKD
0501: RVEKHLQELC LQKINELSQY QMIWTDTDGF VLKPEEPGRL MTKYYLKFET MKYIINTPTS YSLDEALHIV CHAEEISWIQ LRRNEKKTLN DVNADKEGRL
0601: RFHINDNKGK RKKRIQTREE KLFVLANDWL TGDPSVHDLS MTQDANSICS NGSRIARCMK EYFIYKKNYK GTLSSTLLAK SLYQKLWDDS PYLLKQLPGI
0701: GMVTAKALHS MGVRSFEALA EADPRRIEIV TGRKYPFGNT IKESLSSLPP KVEIKVEEVD CQKQGISKLA VTLSRVSQPL QSTKRHYADL IVGSEEENLI
0801: HFHEKIRMED FSSPYSVTVL LERPHQQTKV TVKADLIFEE YIGIDLHETL LLKKANNNKV NYKSENRMPQ YYPPMASACI ADDDNPVTSG PSNRKDKKDD
0901: MPSFKLIDDD SEEEKEPYVT MEEDDCVIIN EHTVFDHIRE KAKCFPSLNP LNPTSSPASG KSILKRKSLV ENNSPELDPL FQYDSVFDLP TNTKDIKQSA
1001: QQITSPGYAS FAEKTETERP FSDETIFNYI RKRSKNSPAL ATSKIENPIT ISSQEGRNAE ISPYRTYGLL VSPATKIPRI TSDAPSEILS FDISMVKRSD
1101: TSLEQTKGFC STLAEVINHS SQIGEVSHHL HNFFMIILIK RLF
Arabidopsis Description
RCKDNA helicase ROCK-N-ROLLERS [Source:UniProtKB/TrEMBL;Acc:A0A1I9LN50]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.