Factsheet for Os12t0291000-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G065680.1	Barley	nucleus	66.02	79.93
PGSC0003DMT400037575	Potato	cytosol, extracellular	6.14	78.75
TraesCS1D01G324400.1	Wheat	plastid	77.82	77.36
TraesCS1A01G323500.1	Wheat	plastid	77.77	77.31
HORVU0Hr1G026710.1	Barley	plastid	72.5	77.13
TraesCS1B01G336400.1	Wheat	plastid	77.96	76.8
OQU79067	Sorghum	plastid	76.35	75.36
Zm00001d023796_P033	Maize	nucleus, plastid	75.77	74.21
CDY51661	Canola	nucleus	49.49	65.23
Solyc08g068120.1.1	Tomato	cytosol, nucleus, plastid	42.86	60.58
GSMUA_Achr11P...	Banana	nucleus	59.68	59.91
CDY23339	Canola	nucleus	53.68	54.75
KRH16213	Soybean	nucleus	57.0	54.45
VIT_04s0008g03960.t01	Wine grape	nucleus	56.9	54.08
AT4G32700.2	Thale cress	nucleus	56.56	53.85
Bra040938.1-P	Field mustard	nucleus	55.73	53.74
Bra011372.1-P	Field mustard	nucleus	56.56	50.46
CDY51662	Canola	nucleus	17.06	45.57
Solyc08g068110.1.1	Tomato	nucleus	14.04	40.85
Os02t0617500-01	Rice	cytosol	7.31	24.08
Os12t0279000-01	Rice	mitochondrion	5.85	15.46
Os11t0176200-01	Rice	nucleus	7.31	14.96
Os02t0160000-01	Rice	cytosol, plasma membrane	0.29	13.95
Os02t0739000-01	Rice	plastid, vacuole	7.95	13.83
Os03t0743800-00	Rice	nucleus	13.65	13.06
Os02t0108700-00	Rice	cytosol	0.63	12.38
Os02t0106966-00	Rice	nucleus	1.66	12.32
Os02t0107000-01	Rice	cytosol, nucleus	2.24	11.73
Os03t0213400-01	Rice	cytosol, nucleus	5.12	9.22

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	Gene3D:1.10.150.20	Gene3D:1.10.3380.20	Gene3D:1.20.1060.10	MapMan:14.2.2
Gene3D:3.30.70.370	Gene3D:3.40.50.300	UniProt:A0A0P0Y964	ProteinID:BAT16782.1	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA-dir_DNA_pol_A_palm_dom
InterPro:DNA_polymerase_A	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0003887	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006260
GO:GO:0006261	GO:GO:0007049	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009628	GO:GO:0009640	GO:GO:0009653	GO:GO:0009791	GO:GO:0009933	GO:GO:0009987
GO:GO:0010468	GO:GO:0016740	GO:GO:0051301	GO:GO:0071897	GO:GO:1902749	GO:GO:1990067
GO:GO:2000011	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	EnsemblPlantsGene:Os12g0291000
EnsemblPlants:Os12t0291000-00	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF00476	PRINTS:PR00868
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10133	PANTHER:PTHR10133:SF27	SMART:SM00482	SMART:SM00487
SMART:SM00490	SUPFAM:SSF158702	SUPFAM:SSF52540	SUPFAM:SSF56672	UniParc:UPI0003939DAD	SEG:seg

Description

Similar to DNA-directed DNA polymerase family protein. (Os12t0291000-00)

Coordinates

chr12:+:11242571..11259839

Molecular Weight (calculated)

225257.0 Da

IEP (calculated)

7.622

GRAVY (calculated)

-0.256

Length

2051 amino acids

Sequence
(BLAST)

0001: MASGSSRANI DQFFPAKKRR PSSRKDEPPS GSPRGAKGSL EGYLVRSPST AAAASLDSPR GGGDAAGARR SLSAAMDVDV GHPATAVATD EGDFELKRFA
0101: MEFLSLSHYC SVIPSVMGGA SNGEAGKQQK RSAIQSFLAP CSNASAKKQR VAHSGDLEAL KDVGHKTPFR EKCGTQYGGP EALEELGEGT KLSSEGFVAL
0201: QRCSFTPNTG QKRVGFSTAP GAGETPMSVS TNSLISPGEE FWNAAIEFAD GISARAEKGP GRPECDVDDK SSCAVALCSK ILPRSGNGGS DHENTVGSNE
0301: TKQMDRSSYK EEPVAANNHH VNSSPLPVKH LDFFHEDEIQ VPGLKIEEKG GAVDLSQKSQ MKNRENLTHS VDNVNKSTFD MHIDSSATIH DECLSKLTTE
0401: GKNHPTRVGD SGSCLTRRDL NQLIYSEDKL LTAYSDHGKP SKDCTNKFAS QEMEANTPTS SVPQKDHSKL SSWLPPELCA IYMKKGIPEL YPWQVECLLV
0501: EGVLEKRNLV YCASTSAGKS FVAEILMLRR ILFSGKMAIL VLPYVSICAE KAEHLEQLLE PLGRHVRSFY GNQGGGSLPK DTSVAVCTIE KANSLVNKLL
0601: EEGRLSELGI IVIDELHMVG DQHRGYLLEL MLTKLRYAAG EGNSESSSGE ISGSSSGKMD ATHGLQIIGM SATMPNVAAV ADWLQAALYQ TEFRPVPLEE
0701: FIKVGNQVFD KDMNVVRVLP KVADLGGKDP DHIVELCNEV VQQGHSVLLF CSSRKGCEST ARHVAKFLKV ASVGSSDVGS EFPDATFAVE ALKRSPSGLD
0801: PVLEETLPSG VAYHHAGLTV EEREIVETCY RKGLVRVLAA TSTLAAGVNL PARRVIFRQP RIGRDFIDGT RYKQMSGRAG RTGIDTKGES ILVCKPEEVK
0901: RITGILRSNC TPLESCLSED KNGMTHAIME VVAGGIVQTA SDIHRYVRCT LLNSTKPFED VVKSAQDSLR WLCHKRFLEW NNETKIYSTT PLGLAAFGSS
1001: LNPEESLVVL DDLSRAREGF VLACDLHLVY LVTPINVDVE PDWELYYERF MQLTSLEQSV GNRVGVIEPF LMHMAHGAAM PVRGKPQRAG IRNRSPTRGS
1101: GGNALINEQA LRVSKRFYVA LMLSRLAQEI PVTDVCEAFK VARGMIQALQ ENAGRFASMV SVFCQRLGWH DLEGLVAKFQ NRVCFGVRAE IAELTSIPFV
1201: KGSRARALYK SGLRTPVAIA EASIPEIAKA LFESSTWSGQ GDSGLRRMQL GIAKKIKNGA RKIVLEEAEA ARVAAFSAFK SLGVQVPQFT TPLLPTIDEP
1301: PTRDSMVSVG RGQASDDTNN CFSYGSQRAS TERTLGNDMH PGSSIQITES ARIVNNANIV VQVASPFSIE TKLSSRNVAD KGPVNAYNFP GGFDSFLDQW
1401: STVSEFSFDL HYVKKSIKSS STYFDILGLA VCWENSPVYY CNFPKDLMMA GSNDSIEMWD ELTRRWNRVI EIMRQNSVKK MTWNLKFQIQ ALKYPCVSCQ
1501: RLSRLHLDYK MLKNVEVLDN LYVFLQPVSV HSGLDICLVA WVLWPDEESK TVPNLEKLVK RRLHNEAAAA ANRDGRWRNQ MHKAAHNGCC RRAAQTRALC
1601: SVLRKLLVSQ NLNDLLETIE GPLVNVLADM ELWGIGADMD ACLRARHIII RKLKELEKEA YKLAGKSFSL NATADIADVL YTHLKLPVPK GCGKGKLHPS
1701: TDKQSLDHLR DQHPIISVIK EHRTLAKLLN GTLGSICSRA QLCSKSQRYI IQGNWLQTST ATGRLSMEEP NLQCVEHLVD FTTLKNDHDS TSMSMVDHHE
1801: INPRDFFIPT QENWLLVTAD YSQIELRLMA HFSKDTALIE LLSKPDGDVF TMIASRWTGK AESLICSKER ETTKRFIYGI LYGMGANSLA EQLECSPEDA
1901: AQKIQSFKRF FPGVSSWLHE AVASCRHKGY VETLMGRRRF LSKITAGNSK EKAKAQRQAV NSICQGSAAD IIKVAMIKVH SAITNGSTVG ATVDSIDVAM
2001: QNFSEIRGRC HLILQVHDEL VLEVDPCMVA EAVRLLQTVM ENSASLLGIT F

Best Arabidopsis Sequence Match ( AT4G32700.2 )
(BLAST)

0001: MDSDSSKSRI DQFYVSKKRK HQSPNLKSGR NEKNVKVTGE RSPGDKGTLD SYLKASLDDK STTNSGLQAR QEAFTRKLDL EVSASSVGQN IHPCLPKPVS
0101: FATFKECLGQ NGSQDLHKEG VAAETHATDG LLCANQKDNS ELRDFATSFL SLYCSGVQSV VGSPPHQKEN ELKRRSSSSS LAQDIQISHK RRCESENIPS
0201: LDDLTNPLGS KPESLARNGN NRDKPVSDPT KKMPSNESVE IPMGLRKCSK APESSAHLTE FHTPGSAIKS CPVGTPKSGC GSSMFSPGEA FWNEAIQVAD
0301: GLTIPIENFG SVEAKVRDQH VTILSCSKKT DKCTEKLERS LDLDEIRVKD KDAIGFSKVV EKHGRDFNKE VYQLPVKNLE LLFQDKNING GIQERCASFD
0401: QNNITLGSSR ISESAFVGNK GCENLDIANN AQADKGLIGK MYPEPEGKKV LLCEENRGVR SVSMISNMRK PVGSSESEES HTPSSSHRNY DGLSLSTWLP
0501: SEVCSVYNKK GISKLYPWQV ECLQVDGVLQ KRNLVYCAST SAGKSFVAEV LMLRRVIRTG KMALLVLPYV SICAEKAEHL EVLLEPLGKH VRSYYGNQGG
0601: GTLPKDTSVA VCTIEKANSL INRLLEEGRL SELGIIVIDE LHMVGDQHRG YLLELMLTKL RYAAGEGSSE SSSGESSGTS SGKADPAHGL QIVGMSATMP
0701: NVGAVADWLQ AALYQTEFRP VPLEEYIKVG STIYNKKMEV VRTIPKAADM GGKDPDHIVE LCNEVVQEGN SVLIFCSSRK GCESTARHIS KLIKNVPVNV
0801: DGENSEFMDI RSAIDALRRS PSGVDPVLEE TLPSGVAYHH AGLTVEEREI VETCYRKGLV RVLTATSTLA AGVNLPARRV IFRQPMIGRD FIDGTRYKQM
0901: SGRAGRTGID TKGDSVLICK PGELKRIMAL LNETCPPLQS CLSEDKNGMT HAILEVVAGG IVQTAKDIHR YVRCTLLNST KPFQDVVKSA QDSLRWLCHR
1001: KFLEWNEETK LYTTTPLGRG SFGSSLCPEE SLIVLDDLLR AREGLVMASD LHLVYLVTPI NVGVEPNWEL YYERFMELSP LEQSVGNRVG VVEPFLMRMA
1101: HGATVRTLNR PQDVKKNLRG EYDSRHGSTS MKMLSDEQML RVCKRFFVAL ILSKLVQEAS VTEVCEAFKV ARGMVQALQE NAGRFSSMVS VFCERLGWHD
1201: LEGLVAKFQN RVSFGVRAEI VELTSIPYIK GSRARALYKA GLRTSQAIAE ASIPEIVKAL FESSAWAAEG TGQRRIHLGL AKKIKNGARK IVLEKAEEAR
1301: AAAFSAFKSL GLDVNELSKP LPLAPASSLN GQETTERDIS RGSVGPDGLQ QSIEGHMECE NFDMDNHREK PSEVLGDATL GVSSEINLTS RLPNFRPIGT
1401: AVGTNGPSAV SILSSDTFPI PVYDNREIKP KDNVEQHLTR NDHIPLSSNK DGTGEKGPVT AGNISGGFDS FLELWGSAGE FFFDLHYNKL QDLNSRISYE
1501: IHGIAICWNC SPVYYVNLNK DLPNLECVEK QKLIEDAVIG KSEVLASHNM LDVIKSRWNK ISKIMGNVNT RKFTWNLKVQ IQVLKSPAIS IQRCTRLNLP
1601: EGIRDELVDG SWLMMPPLHT SHTIDMSIVI WILWPDEERH SNPNIDKEVK KRLSPEAAEA ANRSGRWRNQ IRRVAHNGCC RRVAQTRALC SALWKILVSE
1701: ELLQALTTIE MPLVNVLADM ELWGIGIDIE GCLRARNILR DKLRSLEKKA FELAGMTFSL HNPADIANVL FGQLKLPIPE NQSKGKLHPS TDKHCLDLLR
1801: NEHPVVPIIK EHRTLAKLLN CTLGSICSLA KLRLSTQRYT LHGRWLQTST ATGRLSIEEP NLQSVEHEVE FKLDKNGRDV SSDADRYKIN ARDFFVPTQE
1901: NWLLLTADYS QIELRLMAHF SRDSSLISKL SQPEGDVFTM IAAKWTGKAE DSVSPHDRDQ TKRLIYGILY GMGANRLAEQ LECTSDEAKE KIRSFKSSFP
2001: AVTSWLNETI SFCQEKGYIQ TLKGRRRFLS KIKFGNAKEK SKAQRQAVNS MCQGSAADII KIAMINIYSA IAEDVDTAAS SSSSETRFHM LKGRCRILLQ
2101: VHDELVLEVD PSYVKLAAML LQTSMENAVS LLVPLHVKLK VGKTWGSLEP FQTD

Arabidopsis Description

TEBHelicase and polymerase-containing protein TEBICHI [Source:UniProtKB/Swiss-Prot;Acc:Q588V7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.