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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY51661 Canola nucleus 71.65 97.94
CDY23339 Canola nucleus 90.5 95.72
CDY51662 Canola nucleus 31.88 88.28
AT4G32700.2 Thale cress nucleus 85.61 84.54
Bra011372.1-P Field mustard nucleus 87.4 80.86
PGSC0003DMT400037575 Potato cytosol, extracellular 6.06 80.62
Solyc08g068120.1.1 Tomato cytosol, nucleus, plastid 45.89 67.26
VIT_04s0008g03960.t01 Wine grape nucleus 62.44 61.54
KRH16213 Soybean nucleus 59.43 58.87
HORVU1Hr1G065680.1 Barley nucleus 46.07 57.85
GSMUA_Achr11P... Banana nucleus 54.35 56.58
Os12t0291000-00 Rice nucleus 53.74 55.73
TraesCS1A01G323500.1 Wheat plastid 53.08 54.73
TraesCS1D01G324400.1 Wheat plastid 52.89 54.53
TraesCS1B01G336400.1 Wheat plastid 53.27 54.42
HORVU0Hr1G026710.1 Barley plastid 48.71 53.73
OQU79067 Sorghum plastid 52.23 53.46
Zm00001d023796_P033 Maize nucleus, plastid 52.09 52.91
Solyc08g068110.1.1 Tomato nucleus 15.51 46.81
Bra033025.1-P Field mustard nucleus 9.31 18.1
Bra008413.1-P Field mustard cytosol 7.43 16.88
Bra035425.1-P Field mustard nucleus 2.96 16.67
Bra027835.1-P Field mustard nucleus 7.01 15.59
Bra035426.1-P Field mustard cytosol, golgi, plastid 4.42 15.16
Bra029783.1-P Field mustard cytosol 6.96 15.04
Bra022718.1-P Field mustard cytosol 14.62 14.21
Bra020835.1-P Field mustard cytosol 13.92 14.18
Bra016240.1-P Field mustard plastid 7.76 14.15
Bra012260.1-P Field mustard cytosol 14.43 14.04
Bra018181.1-P Field mustard nucleus 7.99 12.68
Bra029333.1-P Field mustard plastid 11.57 11.53
Protein Annotations
KEGG:00230+2.7.7.7KEGG:00240+2.7.7.7Gene3D:1.10.150.20Gene3D:1.10.3380.20Gene3D:1.20.1060.10MapMan:14.2.2
Gene3D:3.30.420.10Gene3D:3.30.70.370Gene3D:3.40.50.300EnsemblPlantsGene:Bra040938EnsemblPlants:Bra040938.1EnsemblPlants:Bra040938.1-P
ncoils:CoilInterPro:DEAD/DEAH_box_helicase_domInterPro:DNA-dir_DNA_pol_A_palm_domInterPro:DNA_polymerase_AGO:GO:0000166GO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0003824GO:GO:0003887GO:GO:0005488GO:GO:0005524
GO:GO:0006139GO:GO:0006259GO:GO:0006260GO:GO:0006261GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009987GO:GO:0016740GO:GO:0071897InterPro:Helicase_ATP-bdInterPro:Helicase_C
InterPro:IPR001650InterPro:IPR014001InterPro:IPR036397UniProt:M4FIK9InterPro:P-loop_NTPasePFAM:PF00270
PFAM:PF00271PFAM:PF00476PRINTS:PR00868PFscan:PS51192PFscan:PS51194PANTHER:PTHR10133
PANTHER:PTHR10133:SF27InterPro:RNaseH_sfSMART:SM00482SMART:SM00487SMART:SM00490SUPFAM:SSF158702
SUPFAM:SSF52540SUPFAM:SSF56672UniParc:UPI000253EACBSEG:seg::
Description
AT4G32700 (E=0.0) | DNA-directed DNA polymerase family protein
Coordinates
chrScaffold000320:+:2944..13256
Molecular Weight (calculated)
235411.0 Da
IEP (calculated)
7.717
GRAVY (calculated)
-0.377
Length
2127 amino acids
Sequence
(BLAST)
0001: MDSDSSRSRI DQFYVSKKRK HPSPNLKSGR NEKHVKVTGE RSPGDKGTLD SYLKASSLED DKNTTNRCLN QQSGSQVLDK EGVATVATDG LLCANQKDNS
0101: DLRDFATGFL SLYCSEVRSV VGPPPHQNAN ERKRPSSSSL LAQDMQVSHK MRCDSQNIPS LDELAHPLGS KPESISDKRD TSVSEPMQKV KMESTVMVTY
0201: LPAKLIHVQF FDASGLIYSQ IPSNQSAEIS MGLRKCTKAP ESSTHLTECH TPGSVVKSRP VGTPKSGSGS IMFSPGDSFW NEAILFADGL SMPTENSGSV
0301: EAKDGGQNSE KADNCSENLK KTLGLDESRV KDKDAIGYSK VGEKHGRDFN REVSPLPVKN LELLFQDKKT NGGTREQCAS LDQNNITRGN ITVSESVLVE
0401: NKGRGTLDIA SNAQANKHLI GRKYPEPEGK QVLVCQDNHS VRSVSMISNM RKPADSSESE ESYTPSSSHH NKDGLSLSTW LPSEVCSVYN KKGISKLYPW
0501: QVECLQVDGV LEKRNLVYCA STSAGKSFVA EVLMLRRVIT TGKMALLVLP YVSICAEKAE HLELLLEPLG KQVRSYFGNQ GGGTLPKGTS VAVCTIEKAN
0601: SLINRLLEEG RLSELGIIVI DELHMVGDQH RGYLLELMLT KLRYAAGEGS SESSSGESSG NSSGKTDPAH GLQIVGMSAT MPNVGAVADW LQAALYQTEF
0701: RPVPLEEYIK VGNTIYNKKM EVVRTIPKAA DMGGKDPDHI IELCNEVVQE GNSVLIFCSS RKGCESTARH ISKLIKRVPI DVDGEHSEFM DIQSAIDALR
0801: RSPSGVDPVL EETLPSGVAY HHAGLTVEER EIVETCYRKG LVRVLTATST LAAGVNLPAR RVIFRQPMIG RDFLDGTRYK QMAGRAGRTG IDTKGESVLI
0901: CKPGELKRIM ALLNESCPPL ESCLSEDKNG MTHAILEVVA GGIVQTAKDI HRYVRCTLLN STKPFQDVVK SAQDSLRWLC HRKFLEWNEE TKLYTTTPLG
1001: RGAFGSSLCP EESLIVLDDL LRARDGLVMA SDLHLVYLIT PINVGVEPNW ELYYERFMEL SPLEQSVGNR VGVVEPFLMR MAHGATVRTL KKPQDVNKKL
1101: RGEYNNRHGS TSSKMLSDEE MLRVCKRFFV ALILSKLVQE ASVSEVCEAY KVARGMVQAL QENAGRFSSM VSVFCERLGW HDLEGLVAKL QNRVSFGVRA
1201: EIVELTSIPY IKGSRARALY KAGLRTCQAI AEASIPEIVK ALFESSAWAE EGTGQRRIHL GLAKKIKNGA RKIVLEKAEE ARAAAFSAFK SLGLDVHDLS
1301: NPLPLPPARS PNGQVTIERD ISGGSVGPNG PQHIPGRSSM EGHMERGNFD TDNHREKPRD VAGTALGVSS EVNLADPLPE IQPIGTTVGT DGPNAVSFLS
1401: SDDREIKNED NAEQQLTRSA HIPLSNKDNA GEKGPLTAGN ISGGFDSFLK LWESAEEFFF DIHYSKLQNL NSRISYEIHG IAICWNSSPV YYVNLNKDLP
1501: NMECEEKEKL FKDAVIDKKE VLGTQNMLDV IKARWNRISK IMGNEEKRKF TWNLKNQIQV LKSPAISIQR CARLNIAEVV RDHELVDGSW LVMLPLRISH
1601: TIDMGIVSWI LWPDEERHSN PNIDKEVKKR LSPEAAEAAN RSGRWRNQIR RVAHNGCCRR VAQTRALCSA LWKILVSEEL IEALTTTEMP LVNVLADMEL
1701: WGIGVDIEGC LKARNLLRDK LRSLEKKAFE LAGMTFSLHS PADISNVLFR QLKLPIPENH NKGKLHPSTD KHCLDLLRNE HPVVPVIKEH RTLAKLLNST
1801: LGSICSLAKL RLSTQRYTLH GHWLQTSTAT GRLSIEEPNL QSVEHEVEFI LDKSGKEDRY KINARDFFVP TQENWLLLTA DYSQIELRLM AHFSRDSSLV
1901: AQLSQPEGDV FTMIAAKWTG KTEDSVGSHD RDQTKRLIYG ILYGMGANTL AEQLECSSDE AKEKIRSFKS SFPAVTSWLN ETVSFCQEKG YIQTLKGRRR
2001: FLSKIKFGNA KEKSKAQRQA VNSVCQGSAA DIIKIAMINI YSAISEDVNT SASSSSTEAR FHMLKGRCRI LLQVHDELVL EVDPSYAKEA AMLLQSSMEN
2101: AVSLLVPLHV KLKIGKTWGS LEPLQAD
Best Arabidopsis Sequence Match ( AT4G32700.2 )
(BLAST)
0001: MDSDSSKSRI DQFYVSKKRK HQSPNLKSGR NEKNVKVTGE RSPGDKGTLD SYLKASLDDK STTNSGLQAR QEAFTRKLDL EVSASSVGQN IHPCLPKPVS
0101: FATFKECLGQ NGSQDLHKEG VAAETHATDG LLCANQKDNS ELRDFATSFL SLYCSGVQSV VGSPPHQKEN ELKRRSSSSS LAQDIQISHK RRCESENIPS
0201: LDDLTNPLGS KPESLARNGN NRDKPVSDPT KKMPSNESVE IPMGLRKCSK APESSAHLTE FHTPGSAIKS CPVGTPKSGC GSSMFSPGEA FWNEAIQVAD
0301: GLTIPIENFG SVEAKVRDQH VTILSCSKKT DKCTEKLERS LDLDEIRVKD KDAIGFSKVV EKHGRDFNKE VYQLPVKNLE LLFQDKNING GIQERCASFD
0401: QNNITLGSSR ISESAFVGNK GCENLDIANN AQADKGLIGK MYPEPEGKKV LLCEENRGVR SVSMISNMRK PVGSSESEES HTPSSSHRNY DGLSLSTWLP
0501: SEVCSVYNKK GISKLYPWQV ECLQVDGVLQ KRNLVYCAST SAGKSFVAEV LMLRRVIRTG KMALLVLPYV SICAEKAEHL EVLLEPLGKH VRSYYGNQGG
0601: GTLPKDTSVA VCTIEKANSL INRLLEEGRL SELGIIVIDE LHMVGDQHRG YLLELMLTKL RYAAGEGSSE SSSGESSGTS SGKADPAHGL QIVGMSATMP
0701: NVGAVADWLQ AALYQTEFRP VPLEEYIKVG STIYNKKMEV VRTIPKAADM GGKDPDHIVE LCNEVVQEGN SVLIFCSSRK GCESTARHIS KLIKNVPVNV
0801: DGENSEFMDI RSAIDALRRS PSGVDPVLEE TLPSGVAYHH AGLTVEEREI VETCYRKGLV RVLTATSTLA AGVNLPARRV IFRQPMIGRD FIDGTRYKQM
0901: SGRAGRTGID TKGDSVLICK PGELKRIMAL LNETCPPLQS CLSEDKNGMT HAILEVVAGG IVQTAKDIHR YVRCTLLNST KPFQDVVKSA QDSLRWLCHR
1001: KFLEWNEETK LYTTTPLGRG SFGSSLCPEE SLIVLDDLLR AREGLVMASD LHLVYLVTPI NVGVEPNWEL YYERFMELSP LEQSVGNRVG VVEPFLMRMA
1101: HGATVRTLNR PQDVKKNLRG EYDSRHGSTS MKMLSDEQML RVCKRFFVAL ILSKLVQEAS VTEVCEAFKV ARGMVQALQE NAGRFSSMVS VFCERLGWHD
1201: LEGLVAKFQN RVSFGVRAEI VELTSIPYIK GSRARALYKA GLRTSQAIAE ASIPEIVKAL FESSAWAAEG TGQRRIHLGL AKKIKNGARK IVLEKAEEAR
1301: AAAFSAFKSL GLDVNELSKP LPLAPASSLN GQETTERDIS RGSVGPDGLQ QSIEGHMECE NFDMDNHREK PSEVLGDATL GVSSEINLTS RLPNFRPIGT
1401: AVGTNGPSAV SILSSDTFPI PVYDNREIKP KDNVEQHLTR NDHIPLSSNK DGTGEKGPVT AGNISGGFDS FLELWGSAGE FFFDLHYNKL QDLNSRISYE
1501: IHGIAICWNC SPVYYVNLNK DLPNLECVEK QKLIEDAVIG KSEVLASHNM LDVIKSRWNK ISKIMGNVNT RKFTWNLKVQ IQVLKSPAIS IQRCTRLNLP
1601: EGIRDELVDG SWLMMPPLHT SHTIDMSIVI WILWPDEERH SNPNIDKEVK KRLSPEAAEA ANRSGRWRNQ IRRVAHNGCC RRVAQTRALC SALWKILVSE
1701: ELLQALTTIE MPLVNVLADM ELWGIGIDIE GCLRARNILR DKLRSLEKKA FELAGMTFSL HNPADIANVL FGQLKLPIPE NQSKGKLHPS TDKHCLDLLR
1801: NEHPVVPIIK EHRTLAKLLN CTLGSICSLA KLRLSTQRYT LHGRWLQTST ATGRLSIEEP NLQSVEHEVE FKLDKNGRDV SSDADRYKIN ARDFFVPTQE
1901: NWLLLTADYS QIELRLMAHF SRDSSLISKL SQPEGDVFTM IAAKWTGKAE DSVSPHDRDQ TKRLIYGILY GMGANRLAEQ LECTSDEAKE KIRSFKSSFP
2001: AVTSWLNETI SFCQEKGYIQ TLKGRRRFLS KIKFGNAKEK SKAQRQAVNS MCQGSAADII KIAMINIYSA IAEDVDTAAS SSSSETRFHM LKGRCRILLQ
2101: VHDELVLEVD PSYVKLAAML LQTSMENAVS LLVPLHVKLK VGKTWGSLEP FQTD
Arabidopsis Description
TEBHelicase and polymerase-containing protein TEBICHI [Source:UniProtKB/Swiss-Prot;Acc:Q588V7]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.