Factsheet for VIT_04s0008g03960.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037575	Potato	cytosol, extracellular	5.98	80.62
CDY51661	Canola	nucleus	52.97	73.46
Solyc08g068120.1.1	Tomato	cytosol, nucleus, plastid	47.27	70.3
KRH16213	Soybean	nucleus	63.99	64.32
CDY23339	Canola	nucleus	58.67	62.95
AT4G32700.2	Thale cress	nucleus	62.56	62.67
Bra040938.1-P	Field mustard	nucleus	61.54	62.44
GSMUA_Achr11P...	Banana	nucleus	57.55	60.79
HORVU1Hr1G065680.1	Barley	nucleus	46.57	59.33
Bra011372.1-P	Field mustard	nucleus	61.96	58.16
Os12t0291000-00	Rice	nucleus	54.08	56.9
TraesCS1A01G323500.1	Wheat	plastid	53.38	55.84
TraesCS1D01G324400.1	Wheat	plastid	53.29	55.74
HORVU0Hr1G026710.1	Barley	plastid	49.54	55.45
OQU79067	Sorghum	plastid	53.38	55.44
TraesCS1B01G336400.1	Wheat	plastid	53.38	55.33
Zm00001d023796_P033	Maize	nucleus, plastid	53.61	55.25
CDY51662	Canola	nucleus	18.44	51.82
Solyc08g068110.1.1	Tomato	nucleus	16.82	51.49
VIT_14s0066g00880.t01	Wine grape	nucleus	9.82	16.63
VIT_06s0009g01750.t01	Wine grape	cytosol	7.65	16.55
VIT_11s0065g00340.t01	Wine grape	cytosol	7.14	15.48
VIT_01s0026g01000.t01	Wine grape	cytosol	7.55	15.32
VIT_06s0004g05970.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	7.6	15.0
VIT_05s0102g00480.t01	Wine grape	cytosol	13.76	14.37
VIT_06s0004g05980.t01	Wine grape	mitochondrion	2.13	13.81
VIT_17s0000g07240.t01	Wine grape	cytosol	4.22	12.8
VIT_17s0000g07230.t01	Wine grape	cytosol	7.04	11.09

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	Gene3D:1.10.150.20	Gene3D:1.10.3380.20	Gene3D:1.20.1060.10	MapMan:14.2.2
Gene3D:3.30.420.10	Gene3D:3.30.70.370	Gene3D:3.40.50.300	ProteinID:CCB46729	ProteinID:CCB46729.1	ncoils:Coil
InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA-dir_DNA_pol_A_palm_dom	InterPro:DNA_polymerase_A	UniProt:F6H2Z4	EMBL:FN595231	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003887	GO:GO:0004518
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0006261	GO:GO:0007049	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008409	GO:GO:0009058	GO:GO:0009628	GO:GO:0009640
GO:GO:0009653	GO:GO:0009791	GO:GO:0009933	GO:GO:0009987	GO:GO:0010468	GO:GO:0016740
GO:GO:0016787	GO:GO:0051301	GO:GO:0071897	GO:GO:0090305	GO:GO:1902749	GO:GO:1990067
GO:GO:2000011	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR036397
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF00476	PRINTS:PR00868	PFscan:PS51192
PFscan:PS51194	PANTHER:PTHR10133	PANTHER:PTHR10133:SF27	InterPro:RNaseH_sf	SMART:SM00482	SMART:SM00487
SMART:SM00490	SUPFAM:SSF158702	SUPFAM:SSF52540	SUPFAM:SSF56672	UniParc:UPI0002107E84	ArrayExpress:VIT_04s0008g03960
EnsemblPlantsGene:VIT_04s0008g03960	EnsemblPlants:VIT_04s0008g03960.t01	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4:-:3298715..3326185

Molecular Weight (calculated)

237873.0 Da

IEP (calculated)

7.003

GRAVY (calculated)

-0.271

Length

2158 amino acids

Sequence
(BLAST)

0001: MASDSIRNRI DQFFSSKKRK PLSPGLKTGR IEKDSKRAVD GSPSSKGTLD NYLVTYPDDN STARGSSAGK GPVKRNLTLE INLPSKDENE NALLSGQLGH
0101: GTTEAFGETH TENSRGLSQM GGVGVGEQLK DCSVSAHGPV NSELKQIAAD FLSLYCSEFP SSASLPSGLK VNVNKRCGSP SLQDVKNEIS KKRHCIANAD
0201: QSRLEGEDSC LNENNYEDGQ LGLIVKPVTV GNDATEVQGS LRKSNERLKS TVNMTECYTP GPLTVNAFAH ETPNSMRGSS MFSPGESFWN EAIQVADGLF
0301: APKTDEQINA AKSEYEMKNS CNLRNAGCGF KLKEMLVDGD CTVEGMEIGV SSGSLGYRVK DSDQVSPLPV KRFDFLFEEK NLDETNPPHC SADKLDVMDG
0401: EQSACGSVNH KVLKTTGIVI DYCKAQTNGG MSEVKDMNSI DAEAKREVDL LSQEKDNIKA DSPDLGITKS IIACECDEAS TPSSFEPLKD SLDLSKWLPS
0501: EICNIYRKKG ISKLYSWQVD CLKVDGVLQK RNLVYCASTS AGKSFVAEIL MLRRLISTGK MALLVLPYVS ICAEKAEHLE VLLEPLGKHV RSYYGNQGGG
0601: TLPKDTSVAV CTIEKANSLI NRLLEEGRLS EIGIIVIDEL HMVGDQNRGY LLELLLTKLR YAAGEGHVES VSGESSNMSS GKSDPAHGLQ IVGMSATMPN
0701: VAAVADWLQA ALYQTDFRPV PLEEYIKVGN TIYDKKMDII RTISKTADLG GKDPDHIVEL CNEVVQEGHS VLLFCSSRKG CEFTARHVSK FLKKFSTNAH
0801: NNTGEFVDIS SAIDALRRSP AGLDPILEET LPSGVAYHHA GLTVEERDIV ETCYRKGLLR VLTATSTLAA GVNLPARRVI FRQPRIGRDF IDGTRYKQMA
0901: GRAGRTGIDT KGESVLICKP EEVKRICGLL NESCPPLYSC LSEDKNGMTH AILEVVASGI VQTANDINRY VRKFLEWNED TKLYSTTPLG RAAFGSSLCP
1001: EESLVVLDDL SRAREGFVLA SDLHLVYLVT PINVDVEPDW ELFYERFMQL SALDQSVGNR VGVVEPFLMR MAHGAPMCAS NKSRNNGKGL HDKFDNRLGI
1101: TKCSLLSDEQ TLRVCKRFYV ALILSKLVQE VPVTEVCEAF KVARGMVQGL QENAGRFASM VSLFCERLGW NDLEGLVAKF QNRVSFGVRA EIVELTTIPY
1201: VKGSRARALY KAGLRTPLAI AEASIPEIVK ALFEFSSWAA EGNSVQRNVQ LGVAKKIKNA ARKIVLDKAE EARIAAFSAF KSLGLNVPQF SRPLLLIAND
1301: NPSQEAASTS SGEGATSSFV GTECMKSGKP AVEGSENSNK VASEIGVEKL KNMSDVILGT AGEVKSTGPI QCKFGAENPA VLSILNDELN SIVDRNENAV
1401: MPLSIKSMNT GNGNGTSDAY VDHGQHEQQR GENECLDNNG KAYEKGPIHA TNTPGGFDSF LDLWDSVREF YFDIHFNKQS EVNSLAPYEI HGIAICWENS
1501: PVYYINLPKD LLCSDERKNI YLTMNVSDDK PNILDANHRL EAAKWRWSKV GKIMGKKDVR KFTWNLKVQI QVLKNPAVSI QKFGSLNLAM RTMGLELIDN
1601: SYLMLSPVYI VDGLDMCIVT WILWPDEERS SNPNLEKEVR KRLSSEAAAA ANRSGRWKNQ TRRAAHNGCC RRVAQTRALC SVLWKLLVSE ELVEVLLRIE
1701: IPLVTILADM EVWGIGVDME GCIQARNVLG KKLRHLEKEA YELAGMTFSL YTAADIANVL YGHLKLPIPE GHNKGKQHPS TDKHCLDLLR HEHPIIPVIK
1801: EHRTLAKLLN CTLGSICSLA RLSLQTQRYT LHGHWLQTST ATGRLSMEEP NLQCVEHVVE FKMIKGNKDV CNSEADHYKI NARDFFVPSQ ENWLLLTADY
1901: SQIELRLMAH FSRDSSLTEL LSKPHGDVFT MIAAKWTGKP ESVVGYQERE QTKRLVYGIL YGMGANTLAK QLECSLGEAE EKIRSFRSSF PGVASWLHEA
2001: VACCCKKGYV KTLKGRKRFL SKIKFGTSKE KLKARRQAVN SICQGSAADI IKIAMINIHS VIAEGVDEPN SSTELPAKFH MLKGRCRIIL QVHDELVLEV
2101: DPSVMKEAGL LLKMTMENST SLLVPLLVKL KVGRTWGSLE PFHAEPLGDE MLVLQKDV

Best Arabidopsis Sequence Match ( AT4G32700.2 )
(BLAST)

0001: MDSDSSKSRI DQFYVSKKRK HQSPNLKSGR NEKNVKVTGE RSPGDKGTLD SYLKASLDDK STTNSGLQAR QEAFTRKLDL EVSASSVGQN IHPCLPKPVS
0101: FATFKECLGQ NGSQDLHKEG VAAETHATDG LLCANQKDNS ELRDFATSFL SLYCSGVQSV VGSPPHQKEN ELKRRSSSSS LAQDIQISHK RRCESENIPS
0201: LDDLTNPLGS KPESLARNGN NRDKPVSDPT KKMPSNESVE IPMGLRKCSK APESSAHLTE FHTPGSAIKS CPVGTPKSGC GSSMFSPGEA FWNEAIQVAD
0301: GLTIPIENFG SVEAKVRDQH VTILSCSKKT DKCTEKLERS LDLDEIRVKD KDAIGFSKVV EKHGRDFNKE VYQLPVKNLE LLFQDKNING GIQERCASFD
0401: QNNITLGSSR ISESAFVGNK GCENLDIANN AQADKGLIGK MYPEPEGKKV LLCEENRGVR SVSMISNMRK PVGSSESEES HTPSSSHRNY DGLSLSTWLP
0501: SEVCSVYNKK GISKLYPWQV ECLQVDGVLQ KRNLVYCAST SAGKSFVAEV LMLRRVIRTG KMALLVLPYV SICAEKAEHL EVLLEPLGKH VRSYYGNQGG
0601: GTLPKDTSVA VCTIEKANSL INRLLEEGRL SELGIIVIDE LHMVGDQHRG YLLELMLTKL RYAAGEGSSE SSSGESSGTS SGKADPAHGL QIVGMSATMP
0701: NVGAVADWLQ AALYQTEFRP VPLEEYIKVG STIYNKKMEV VRTIPKAADM GGKDPDHIVE LCNEVVQEGN SVLIFCSSRK GCESTARHIS KLIKNVPVNV
0801: DGENSEFMDI RSAIDALRRS PSGVDPVLEE TLPSGVAYHH AGLTVEEREI VETCYRKGLV RVLTATSTLA AGVNLPARRV IFRQPMIGRD FIDGTRYKQM
0901: SGRAGRTGID TKGDSVLICK PGELKRIMAL LNETCPPLQS CLSEDKNGMT HAILEVVAGG IVQTAKDIHR YVRCTLLNST KPFQDVVKSA QDSLRWLCHR
1001: KFLEWNEETK LYTTTPLGRG SFGSSLCPEE SLIVLDDLLR AREGLVMASD LHLVYLVTPI NVGVEPNWEL YYERFMELSP LEQSVGNRVG VVEPFLMRMA
1101: HGATVRTLNR PQDVKKNLRG EYDSRHGSTS MKMLSDEQML RVCKRFFVAL ILSKLVQEAS VTEVCEAFKV ARGMVQALQE NAGRFSSMVS VFCERLGWHD
1201: LEGLVAKFQN RVSFGVRAEI VELTSIPYIK GSRARALYKA GLRTSQAIAE ASIPEIVKAL FESSAWAAEG TGQRRIHLGL AKKIKNGARK IVLEKAEEAR
1301: AAAFSAFKSL GLDVNELSKP LPLAPASSLN GQETTERDIS RGSVGPDGLQ QSIEGHMECE NFDMDNHREK PSEVLGDATL GVSSEINLTS RLPNFRPIGT
1401: AVGTNGPSAV SILSSDTFPI PVYDNREIKP KDNVEQHLTR NDHIPLSSNK DGTGEKGPVT AGNISGGFDS FLELWGSAGE FFFDLHYNKL QDLNSRISYE
1501: IHGIAICWNC SPVYYVNLNK DLPNLECVEK QKLIEDAVIG KSEVLASHNM LDVIKSRWNK ISKIMGNVNT RKFTWNLKVQ IQVLKSPAIS IQRCTRLNLP
1601: EGIRDELVDG SWLMMPPLHT SHTIDMSIVI WILWPDEERH SNPNIDKEVK KRLSPEAAEA ANRSGRWRNQ IRRVAHNGCC RRVAQTRALC SALWKILVSE
1701: ELLQALTTIE MPLVNVLADM ELWGIGIDIE GCLRARNILR DKLRSLEKKA FELAGMTFSL HNPADIANVL FGQLKLPIPE NQSKGKLHPS TDKHCLDLLR
1801: NEHPVVPIIK EHRTLAKLLN CTLGSICSLA KLRLSTQRYT LHGRWLQTST ATGRLSIEEP NLQSVEHEVE FKLDKNGRDV SSDADRYKIN ARDFFVPTQE
1901: NWLLLTADYS QIELRLMAHF SRDSSLISKL SQPEGDVFTM IAAKWTGKAE DSVSPHDRDQ TKRLIYGILY GMGANRLAEQ LECTSDEAKE KIRSFKSSFP
2001: AVTSWLNETI SFCQEKGYIQ TLKGRRRFLS KIKFGNAKEK SKAQRQAVNS MCQGSAADII KIAMINIYSA IAEDVDTAAS SSSSETRFHM LKGRCRILLQ
2101: VHDELVLEVD PSYVKLAAML LQTSMENAVS LLVPLHVKLK VGKTWGSLEP FQTD

Arabidopsis Description

TEBHelicase and polymerase-containing protein TEBICHI [Source:UniProtKB/Swiss-Prot;Acc:Q588V7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.