Factsheet for VIT_06s0009g01750.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G048420.1	Barley	cytosol	7.62	92.68
PGSC0003DMT400053368	Potato	nucleus	83.05	83.47
Solyc01g103080.2.1	Tomato	nucleus	82.85	83.35
KRH46878	Soybean	nucleus	81.04	82.36
Os12t0279000-01	Rice	mitochondrion	62.99	80.93
AT1G59760.1	Thale cress	cytosol, nucleus, plastid	79.34	80.06
EER87693	Sorghum	cytosol	80.34	80.02
TraesCS7D01G010500.1	Wheat	cytosol	79.14	79.86
Zm00001d045590_P005	Maize	cytosol, nucleus, plastid	79.94	79.7
Bra027835.1-P	Field mustard	nucleus	76.23	79.5
Bra035425.1-P	Field mustard	nucleus	30.09	79.37
TraesCS4A01G484300.2	Wheat	cytosol	79.04	79.2
Bra035426.1-P	Field mustard	cytosol, golgi, plastid	49.25	79.19
CDY45149	Canola	nucleus	29.99	79.1
CDY65064	Canola	nucleus	78.13	78.61
GSMUA_Achr2P17890_001	Banana	cytosol, nucleus, plastid	79.74	78.56
CDY30903	Canola	nucleus	77.73	78.52
CDY45148	Canola	endoplasmic reticulum	48.75	78.14
HORVU7Hr1G001080.1	Barley	cytosol, nucleus, plastid	78.54	75.22
TraesCS7A01G010800.1	Wheat	cytosol	78.44	73.43
HORVU1Hr1G018080.31	Barley	cytosol, nucleus, plastid	18.86	64.38
CDY33604	Canola	cytosol	18.15	61.56
VIT_11s0065g00340.t01	Wine grape	cytosol	47.34	47.44
VIT_06s0004g05970.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	33.8	30.83
VIT_01s0026g01000.t01	Wine grape	cytosol	24.17	22.65
VIT_06s0004g05980.t01	Wine grape	mitochondrion	6.22	18.62
VIT_14s0066g00880.t01	Wine grape	nucleus	14.04	10.98
VIT_17s0000g07240.t01	Wine grape	cytosol	7.72	10.83
VIT_05s0102g00480.t01	Wine grape	cytosol	17.45	8.42
VIT_17s0000g07230.t01	Wine grape	cytosol	10.63	7.74
VIT_04s0008g03960.t01	Wine grape	nucleus	16.55	7.65

Protein Annotations

Gene3D:1.10.3380.30	Gene3D:1.20.1500.20	EntrezGene:100258243	wikigene:100258243	MapMan:16.8.1.2.3.1	Gene3D:2.40.30.300
Gene3D:3.40.50.300	ProteinID:CCB49140	ProteinID:CCB49140.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	UniProt:F6H9Z0
EMBL:FN595504	GO:GO:0000166	GO:GO:0000460	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003724	GO:GO:0003824	GO:GO:0004004	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006401	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF08148
PFAM:PF13234	PIRSF:PIRSF005198	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR12131	PANTHER:PTHR12131:SF7
EntrezGene:SKIV2L2	wikigene:SKIV2L2	SMART:SM00487	SMART:SM00490	SMART:SM01142	SUPFAM:SSF52540
InterPro:Ski2-like	InterPro:Ski2_C	TIGR:TC67313	UniParc:UPI000210A0EC	ArrayExpress:VIT_06s0009g01750	EnsemblPlantsGene:VIT_06s0009g01750
EnsemblPlants:VIT_06s0009g01750.t01	RefSeq:XP_002273102	RefSeq:XP_002273102.1	InterPro:rRNA_proc-arch_dom	SEG:seg	:

Description

No Description!

Coordinates

chr6:-:13745703..13765288

Molecular Weight (calculated)

113698.0 Da

IEP (calculated)

6.423

GRAVY (calculated)

-0.333

Length

997 amino acids

Sequence
(BLAST)

001: MGSLKRKSTE DPSVERLSPQ KQQREDSASL NTLEESVACI HDVSYPEGYE PRSSFSSSPR KDSKPAKEFP FTLDPFQSEA IKCLDAEESV MVSAHTSAGK
101: TVVALYAIAM SLQNNQRVIY TSPIKALSNQ KYREFKEEFS DVGLMTGDVT IEPNASCLVM TTEIWRSMQY KGSEIIREVA WVIFDEVHYM RDRERGVVWE
201: ESIVMAPRNS RFVFLSATVP NAKEFADWVA KVHQQPCHIV YTDYRPTPLQ HYIFPSGGDG LYLVVDEKGK FREDSFQKAL NALVPAGEGD KKRENGKRQK
301: GLVVGRAGEE SDIFKMVKMI IQRQYDPVIL FSFSKRDCEF LAMQMARMDL NDDNEKVNIE TIFWSAMDML SDDDKKLPQA RIVSNMLPLL KRGIGVHHSG
401: LLPILKEVIE ILFQEGLIKC LFATETFSIG LNMPAKTVVF TNVRKFDGDK FRWISSGEFI QMSGRAGRRG IDERGICILM VDEKLEPSTA KMMLKGSADC
501: LNSAFHLSYN MLLNQMRSED GDPEKLLRNS FYQFQADRAI PDLEKQAKNL EEERDSIIIE EEDSLENYYN LIQQYKSLKK DVRDIVFSPR YCLPFLQPGR
601: LVCIQCTKTE ENSPSFCIKD QTTWAVIINF ERVKGTEDDV SRKPEDADYM VDVLTRCTVS RDGVLKKTIK IVSLKEPGEP VVVTVPISQI DGLSSVRLII
701: SKDLLPLEAR ENTLKKVSEV LSRFAKEGMP LLDPEEDMKV QSSQYRKAVR RIEALESLFD KHEVAKSPLI EQKLKVLHMK KELTAKIKSI KRTMRSSTAL
801: AFKDELKARK RVLRKLGYVT SDNVVELKGK VACEISSADE LTLTELMFNG VFKDIKVEDM VSLLSCFVWR EKLQDAQKPK DELELLFTQL QDTARRVAKV
901: QLESKVQIDV ESFVNSFRPD IMEAVHAWAK GSKFYQIMEI TQVFEGSLIR AIRRLEEVLQ QLIQAAKSIG ETELEAKFEE AVSKIKRDIV FAASLYL

Best Arabidopsis Sequence Match ( AT1G59760.1 )
(BLAST)

001: MGSVKRKSVE ESSDSAPPQK VQREDDSTQI INEELVGCVH DVSFPENYVP LAPSVHNKPP AKDFPFTLDS FQSEAIKCLD NGESVMVSAH TSAGKTVVAS
101: YAIAMSLKEN QRVIYTSPIK ALSNQKYRDF KEEFSDVGLM TGDVTIDPNA SCLVMTTEIL RSMQYKGSEI MREVAWIIFD EVHYMRDSER GVVWEESIVM
201: APKNSRFVFL SATVPNAKEF ADWVAKVHQQ PCHIVYTDYR PTPLQHYVFP AGGNGLYLVV DEKSKFHEDS FQKSLNALVP TNESDKKRDN GKFQKGLVIG
301: KLGEESDIFK LVKMIIQRQY DPVILFSFSK KECEALAMQM SKMVLNSDDE KDAVETIFAS AIDMLSDDDK KLPQVSNILP ILKRGIGVHH SGLLPILKEV
401: IEILFQEGLI KCLFATETFS IGLNMPAKTV VFTNVRKFDG DKFRWLSSGE YIQMSGRAGR RGIDKRGICI LMVDEKMEPA VAKSMLKGSA DSLNSAFHLS
501: YNMLLNQLRC EEGDPENLLR NSFFQFQADR AIPDLEKQIK SLEEERDSLV IEEEESLKNY YNLILQYKSL KKDIREIVFT PKYCLPFLLP NRAVCLDCTN
601: DDEEPQSFSI EDQDTWGVIM KFNKVKSLSE DDDSRRPEDA NYTVDVLTRC MVSKDGVGKK KVKAVPIKER GEPVVVTVPL SQIKSLSSAI MNIPKDLVPL
701: EARENALKKV SELLSRHPDG IPLDPEVDMK IKSSSYKKTV RRLEALENLF EKHKIAKSPL ITEKLKVLQM KEELIAKIKS LKKTVRSSTA LAFKDELKAR
801: KRVLRRLGYI TSDNVVELKG KVACEISSAE ELTLTELMFS GIFKDAKVEE LVSLLSCFVW RERLPDAAKP REELDLLFIQ LQDTARRVAE VQLDCKVEID
901: VESFVQSFRP DIMEAVYAWA KGSKFYEVME IARVFEGSLI RAIRRMEEVL QQLIVAAKSI GETQLEAKLE EAVSKIKRDI VFAASLYL

Arabidopsis Description

MTR4DExH-box ATP-dependent RNA helicase DExH9 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIF2]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.