Factsheet for Os12t0279000-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
nucleus 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45148	Canola	endoplasmic reticulum	60.44	75.4
Bra035426.1-P	Field mustard	cytosol, golgi, plastid	59.92	75.0
TraesCS7D01G010500.1	Wheat	cytosol	89.18	70.04
EER87693	Sorghum	cytosol	90.08	69.83
TraesCS4A01G484300.2	Wheat	cytosol	88.92	69.35
Zm00001d045590_P005	Maize	cytosol, nucleus, plastid	88.79	68.9
HORVU7Hr1G001080.1	Barley	cytosol, nucleus, plastid	87.89	65.51
TraesCS7A01G010800.1	Wheat	cytosol	88.4	64.41
VIT_06s0009g01750.t01	Wine grape	cytosol	80.93	62.99
GSMUA_Achr2P17890_001	Banana	cytosol, nucleus, plastid	81.96	62.85
KRH46878	Soybean	nucleus	78.48	62.08
PGSC0003DMT400053368	Potato	nucleus	78.99	61.79
Solyc01g103080.2.1	Tomato	nucleus	78.61	61.55
AT1G59760.1	Thale cress	cytosol, nucleus, plastid	76.8	60.32
Bra027835.1-P	Field mustard	nucleus	73.32	59.52
CDY30903	Canola	nucleus	75.0	58.97
CDY33604	Canola	cytosol	22.29	58.84
CDY65064	Canola	nucleus	75.13	58.83
Os02t0160000-01	Rice	cytosol, plasma membrane	2.32	41.86
Os11t0176200-01	Rice	nucleus	46.13	35.69
CDY45149	Canola	nucleus	16.11	33.07
Bra035425.1-P	Field mustard	nucleus	16.11	33.07
Os02t0739000-01	Rice	plastid, vacuole	20.88	13.74
Os02t0617500-01	Rice	cytosol	9.15	11.4
Os02t0108700-00	Rice	cytosol	1.03	7.62
Os02t0107000-01	Rice	cytosol, nucleus	3.61	7.14
Os03t0743800-00	Rice	nucleus	16.62	6.02
Os12t0291000-00	Rice	nucleus	15.46	5.85
Os03t0213400-01	Rice	cytosol, nucleus	7.99	5.44
Os02t0106966-00	Rice	nucleus	0.26	0.72

Protein Annotations

Gene3D:1.10.3380.30	Gene3D:1.20.1500.20	MapMan:16.8.1.2.3.1	Gene3D:2.40.30.300	Gene3D:3.40.50.300	ProteinID:ABA97113.1
ProteinID:BAT16699.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003724	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0006139	GO:GO:0006364	GO:GO:0006401
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0031125
InterPro:Helicase_C	InterPro:IPR001650	EnsemblPlantsGene:Os12g0279000	EnsemblPlants:Os12t0279000-01	InterPro:P-loop_NTPase	PFAM:PF00271
PFAM:PF08148	PFAM:PF13234	PIRSF:PIRSF005198	PFscan:PS51194	PANTHER:PTHR12131	PANTHER:PTHR12131:SF7
UniProt:Q2QTY0	SMART:SM00490	SMART:SM01142	SUPFAM:SSF52540	InterPro:Ski2-like	InterPro:Ski2_C
UniParc:UPI0000681533	InterPro:rRNA_proc-arch_dom	SEG:seg	:	:	:

Description

Helicase, C-terminal domain containing protein. (Os12t0279000-01)

Coordinates

chr12:+:10458981..10466190

Molecular Weight (calculated)

89157.0 Da

IEP (calculated)

7.353

GRAVY (calculated)

-0.373

Length

776 amino acids

Sequence
(BLAST)

001: MPRSLLTGWL RECFISQVHK QPCHIVYTDY RPTPLQHYVF PSGGDGLYLV VDEKSKFRED SFQKGLNALV PASENDKKRE NGKWQKGLLT GKPSEDSDIF
101: KMVKMIIQRQ YDPVILFSFS KRECEFLAMQ MAKMDLNDDD EKANIETIFW SAMDLLSDDD KKLPQVSNML PLLKRGIGVH HSGLLPILKE VIEILFQEGL
201: IKCLFATETF SIGLNMPAKT VVFTNVRKFD GDRFRWLSSG EYIQMSGRAG RRGIDQRGIC ILMVDEKMEP STAKMILKGS ADSLNSAFHL SYNMLLNQIR
301: CEDGDPEKLL RHSFYQFQAD RVLPDLEKQV KELELERNSM IIEEEENLKS YYDLLQQYKN LKKDVRDIVH SPKYVLPFLQ PGRLARVQYS TDEQSTFSID
401: ENITWGVTIN FEKVKTHSED RRPEDSDYTV DVLTRCSVSK DKSGKKTMKI IPLKDRGEPV VISLPLSQID GLSSIRMHIP KDLLPVEARE NTLRKVDEVI
501: SRFAKDGIPL LDPEEDMKVQ SSSFRKASRR IEALESLFEK HDVHNSPHIK QKLKVLHAKQ ELSTKIKAIK RTMRSSTALA FKDELKARKR VLRRLGYITS
601: EDVVEVKGKV ACEISSADEL TLTELMFSGT LKDATVEQMV ALLSCFVWQE KLQDAPKPRE ELDLLFFQLQ ETARRVANLQ LDCKIQIDVE SFVNSFRPDI
701: MEAVYSWAKG SKFYQIMEMT QVFEGSLIRA IRRLEEVLQQ LILASKSIGE TQLEAKLEEA VSKIKRDIVF AASLYL

Best Arabidopsis Sequence Match ( AT1G59760.1 )
(BLAST)

001: MGSVKRKSVE ESSDSAPPQK VQREDDSTQI INEELVGCVH DVSFPENYVP LAPSVHNKPP AKDFPFTLDS FQSEAIKCLD NGESVMVSAH TSAGKTVVAS
101: YAIAMSLKEN QRVIYTSPIK ALSNQKYRDF KEEFSDVGLM TGDVTIDPNA SCLVMTTEIL RSMQYKGSEI MREVAWIIFD EVHYMRDSER GVVWEESIVM
201: APKNSRFVFL SATVPNAKEF ADWVAKVHQQ PCHIVYTDYR PTPLQHYVFP AGGNGLYLVV DEKSKFHEDS FQKSLNALVP TNESDKKRDN GKFQKGLVIG
301: KLGEESDIFK LVKMIIQRQY DPVILFSFSK KECEALAMQM SKMVLNSDDE KDAVETIFAS AIDMLSDDDK KLPQVSNILP ILKRGIGVHH SGLLPILKEV
401: IEILFQEGLI KCLFATETFS IGLNMPAKTV VFTNVRKFDG DKFRWLSSGE YIQMSGRAGR RGIDKRGICI LMVDEKMEPA VAKSMLKGSA DSLNSAFHLS
501: YNMLLNQLRC EEGDPENLLR NSFFQFQADR AIPDLEKQIK SLEEERDSLV IEEEESLKNY YNLILQYKSL KKDIREIVFT PKYCLPFLLP NRAVCLDCTN
601: DDEEPQSFSI EDQDTWGVIM KFNKVKSLSE DDDSRRPEDA NYTVDVLTRC MVSKDGVGKK KVKAVPIKER GEPVVVTVPL SQIKSLSSAI MNIPKDLVPL
701: EARENALKKV SELLSRHPDG IPLDPEVDMK IKSSSYKKTV RRLEALENLF EKHKIAKSPL ITEKLKVLQM KEELIAKIKS LKKTVRSSTA LAFKDELKAR
801: KRVLRRLGYI TSDNVVELKG KVACEISSAE ELTLTELMFS GIFKDAKVEE LVSLLSCFVW RERLPDAAKP REELDLLFIQ LQDTARRVAE VQLDCKVEID
901: VESFVQSFRP DIMEAVYAWA KGSKFYEVME IARVFEGSLI RAIRRMEEVL QQLIVAAKSI GETQLEAKLE EAVSKIKRDI VFAASLYL

Arabidopsis Description

MTR4DExH-box ATP-dependent RNA helicase DExH9 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIF2]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.