CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G048420.1	Barley	cytosol	7.75	92.68
VIT_06s0009g01750.t01	Wine grape	cytosol	82.36	81.04
PGSC0003DMT400053368	Potato	nucleus	79.82	78.93
EER87693	Sorghum	cytosol	80.33	78.72
Solyc01g103080.2.1	Tomato	nucleus	79.51	78.71
AT1G59760.1	Thale cress	cytosol, nucleus, plastid	79.1	78.54
Os12t0279000-01	Rice	mitochondrion	62.08	78.48
CDY45148	Canola	endoplasmic reticulum	49.64	78.3
Zm00001d045590_P005	Maize	cytosol, nucleus, plastid	79.51	78.0
Bra035426.1-P	Field mustard	cytosol, golgi, plastid	49.24	77.9
Bra027835.1-P	Field mustard	nucleus	75.74	77.72
TraesCS7D01G010500.1	Wheat	cytosol	77.98	77.43
TraesCS4A01G484300.2	Wheat	cytosol	77.78	76.68
CDY30903	Canola	nucleus	77.06	76.6
CDY65064	Canola	nucleus	76.76	75.98
GSMUA_Achr2P17890_001	Banana	cytosol, nucleus, plastid	77.57	75.2
CDY45149	Canola	nucleus	28.85	74.87
Bra035425.1-P	Field mustard	nucleus	28.75	74.6
HORVU7Hr1G001080.1	Barley	cytosol, nucleus, plastid	77.47	73.01
TraesCS7A01G010800.1	Wheat	cytosol	77.27	71.17
HORVU1Hr1G018080.31	Barley	cytosol, nucleus, plastid	19.06	64.04
CDY33604	Canola	cytosol	18.04	60.2
KRH41401	Soybean	nucleus	49.13	49.39
KRH60115	Soybean	cytosol	48.11	48.81
KRG98348	Soybean	cytosol	35.17	25.71
KRH74713	Soybean	nucleus	25.38	21.43
KRH07179	Soybean	endoplasmic reticulum, plastid	13.97	11.51
KRH54676	Soybean	nucleus	17.53	8.24
KRH43818	Soybean	nucleus	17.84	8.02
KRH13647	Soybean	cytosol	17.74	7.97
KRH16213	Soybean	nucleus	16.0	7.31

Protein Annotations

Gene3D:1.10.3380.30	Gene3D:1.20.1500.20	EntrezGene:100804792	MapMan:16.8.1.2.3.1	Gene3D:2.40.30.300	Gene3D:3.40.50.300
EMBL:ACUP02005362	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlantsGene:GLYMA_08G361900	GO:GO:0000166	GO:GO:0000460
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003724	GO:GO:0003824	GO:GO:0004004
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0006139	GO:GO:0006355	GO:GO:0006364	GO:GO:0006401	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0031125
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	UniProt:I1KZI0	InterPro:IPR001650	InterPro:IPR014001	EnsemblPlants:KRH46878
ProteinID:KRH46878	ProteinID:KRH46878.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF08148
PFAM:PF13234	PIRSF:PIRSF005198	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR12131	PANTHER:PTHR12131:SF7
SMART:SM00487	SMART:SM00490	SMART:SM01142	SUPFAM:SSF52540	InterPro:Ski2-like	InterPro:Ski2_C
UniParc:UPI0002337E1C	InterPro:rRNA_proc-arch_dom	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:47342835..47356083

Molecular Weight (calculated)

111481.0 Da

IEP (calculated)

6.397

GRAVY (calculated)

-0.290

Length

981 amino acids

Sequence
(BLAST)

001: MGSLKRKSPE EPSSSTLQPL HDCVHHVSYP DGYNNVHASS SSPTHTTTSE PAKNFPFPLD PFQSKSISCL ENGESVMVSA HTSAGKTVVA LYAIAMSLRN
101: GQRVVYTSPI KALSNQKYRE FKEEFSDVGL MTGDVTIDPN ASCLVMTTEI WRSMQYKGSE LTREVAWIVF DEVHYMRDRE RGVVWEESIV LSPKNSRFVF
201: LSATVPNAKE FADWVAKVHQ QPCHVVYTDY RPTPLQHYLF PSGGDGLYLV VDEKGKFRED SFQKSLNALI PATEGDKKKE NGKWQKGLVL GRSGEESDIF
301: KMVKMIIQRQ YDPVILFSFS KRECEFLAMQ MAKMDLNGDN EKDNIEQIFC SAMDMLSDDD KKLPQVSNML PLLKRGIGVH HSGLLPILKE VIEILFQEGL
401: IKCLFATETF SIGLNMPAKT VVFTNVRKFD GDKFRWISSG EYIQMSGRAG RRGIDERGIC ILMVDEKMEP STAKNMVKGA ADSLNSAFHL SYNMILNQMR
501: CEDGDPENLL RNSFFQFQAD RAIPDLEKQI KSLEEERESI VIEEESSLKD YFNLLEQHRA LNKEIRDIVL SPRHCLPFLQ PGRLVSLECT SSDEDLPLIF
601: IEDQLTWGLV INFERVKSVS EDDASIKPED ASYIVDVLTR CVVRKDKIGK KSIKIVPLKE VGEPLVVSVP ISQINTISSL RLYIPKDLLP LEARENTLKK
701: VLETLTRFGE KGLPLLDPEE DMKIQSSSYK KASRRIEALE SLFEKHEIAK SPLIKQKLKV FQRKQELTAK IKSIKKALRS SSALAFKDEL KARKRVLRRL
801: GYATSDNVVE LKGRVACEIS SADELTLTEL MFNGVLKDIK VEEMVSLLSC FVWQEKIHDA AKPREELDFL FMQLQDTARR VAQLQLECKV EIDVESFVKS
901: FRPDIMEAVY AWAKGSKFYE IMEITQVFEG SLIRAIRRLE EVLQQLIEAA KSIGETQLEA KFEEAVSKIK RDIVFAASLY L

Best Arabidopsis Sequence Match ( AT1G59760.1 )
(BLAST)

001: MGSVKRKSVE ESSDSAPPQK VQREDDSTQI INEELVGCVH DVSFPENYVP LAPSVHNKPP AKDFPFTLDS FQSEAIKCLD NGESVMVSAH TSAGKTVVAS
101: YAIAMSLKEN QRVIYTSPIK ALSNQKYRDF KEEFSDVGLM TGDVTIDPNA SCLVMTTEIL RSMQYKGSEI MREVAWIIFD EVHYMRDSER GVVWEESIVM
201: APKNSRFVFL SATVPNAKEF ADWVAKVHQQ PCHIVYTDYR PTPLQHYVFP AGGNGLYLVV DEKSKFHEDS FQKSLNALVP TNESDKKRDN GKFQKGLVIG
301: KLGEESDIFK LVKMIIQRQY DPVILFSFSK KECEALAMQM SKMVLNSDDE KDAVETIFAS AIDMLSDDDK KLPQVSNILP ILKRGIGVHH SGLLPILKEV
401: IEILFQEGLI KCLFATETFS IGLNMPAKTV VFTNVRKFDG DKFRWLSSGE YIQMSGRAGR RGIDKRGICI LMVDEKMEPA VAKSMLKGSA DSLNSAFHLS
501: YNMLLNQLRC EEGDPENLLR NSFFQFQADR AIPDLEKQIK SLEEERDSLV IEEEESLKNY YNLILQYKSL KKDIREIVFT PKYCLPFLLP NRAVCLDCTN
601: DDEEPQSFSI EDQDTWGVIM KFNKVKSLSE DDDSRRPEDA NYTVDVLTRC MVSKDGVGKK KVKAVPIKER GEPVVVTVPL SQIKSLSSAI MNIPKDLVPL
701: EARENALKKV SELLSRHPDG IPLDPEVDMK IKSSSYKKTV RRLEALENLF EKHKIAKSPL ITEKLKVLQM KEELIAKIKS LKKTVRSSTA LAFKDELKAR
801: KRVLRRLGYI TSDNVVELKG KVACEISSAE ELTLTELMFS GIFKDAKVEE LVSLLSCFVW RERLPDAAKP REELDLLFIQ LQDTARRVAE VQLDCKVEID
901: VESFVQSFRP DIMEAVYAWA KGSKFYEVME IARVFEGSLI RAIRRMEEVL QQLIVAAKSI GETQLEAKLE EAVSKIKRDI VFAASLYL

Arabidopsis Description

MTR4DExH-box ATP-dependent RNA helicase DExH9 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIF2]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.