CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41401	Soybean	nucleus	97.1	96.21
VIT_11s0065g00340.t01	Wine grape	cytosol	86.56	84.12
Bra029783.1-P	Field mustard	cytosol	80.77	79.37
AT2G06990.1	Thale cress	nucleus	81.39	79.1
CDY44724	Canola	cytosol	80.77	79.05
CDY41593	Canola	cytosol	80.45	78.51
Solyc12g017860.1.1	Tomato	nucleus	75.59	77.77
PGSC0003DMT400052548	Potato	cytosol	78.18	77.22
Os11t0176200-01	Rice	nucleus	77.56	74.78
TraesCS4A01G216300.1	Wheat	cytosol	76.94	74.1
HORVU2Hr1G028060.7	Barley	cytosol	77.04	74.06
TraesCS4D01G091400.1	Wheat	cytosol	77.46	74.01
EES02351	Sorghum	nucleus	76.84	74.0
TraesCS2B01G179600.1	Wheat	cytosol	76.84	73.86
TraesCS2D01G159900.1	Wheat	cytosol	76.53	73.56
Zm00001d008777_P008	Maize	nucleus	76.42	73.46
TraesCS2A01G154400.1	Wheat	cytosol	76.53	73.05
HORVU4Hr1G018990.9	Barley	plastid	75.9	70.78
GSMUA_Achr3P05450_001	Banana	nucleus	78.9	70.65
TraesCS4B01G094600.1	Wheat	nucleus	76.63	67.61
KRH46878	Soybean	nucleus	48.81	48.11
KRG98348	Soybean	cytosol	35.26	25.41
KRH74713	Soybean	nucleus	23.99	19.97
KRH07179	Soybean	endoplasmic reticulum, plastid	12.51	10.17
KRH43818	Soybean	nucleus	17.89	7.92
KRH13647	Soybean	cytosol	17.79	7.88
KRH54676	Soybean	nucleus	16.65	7.71
KRH16213	Soybean	nucleus	15.72	7.08

Protein Annotations

Gene3D:1.10.3380.30	Gene3D:1.20.1500.20	MapMan:16.8.1.2.3.1	Gene3D:2.40.30.300	Gene3D:3.40.50.300	UniProt:A0A0R0K5X3
EMBL:ACUP02003349	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlantsGene:GLYMA_05G221200	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003724	GO:GO:0003824	GO:GO:0004004	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0006401	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787
GO:GO:0055087	GO:GO:0070478	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
EnsemblPlants:KRH60115	ProteinID:KRH60115	ProteinID:KRH60115.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
PFAM:PF08148	PFAM:PF13234	PIRSF:PIRSF005198	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR12131
PANTHER:PTHR12131:SF6	SMART:SM00487	SMART:SM00490	SMART:SM01142	SUPFAM:SSF52540	InterPro:Ski2-like
InterPro:Ski2_C	UniParc:UPI0006EDF5C6	InterPro:rRNA_proc-arch_dom	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr5:-:40060336..40072618

Molecular Weight (calculated)

109107.0 Da

IEP (calculated)

6.640

GRAVY (calculated)

-0.291

Length

967 amino acids

Sequence
(BLAST)

001: MEMEKEKESL TLGKRREPDL PVTVTETTSM PKKARSSERT CVHEVAVPSG YVSSKDEDLH GTLSNPLHNG PMAKSYPFTL DPFQQVSIAC LERNESVLVS
101: AHTSDGKTAV AEYAIAMSFR DKQRVIYTSP LKALSNQKYR ELSQEFTDVG LMTGDVTLSP NATCLVMTTE ILRGMLYRGS EVLKEVAWVI FDEIHYMKDR
201: ERGVVWEESI IFLPPAIKMV FLSATMSNAT EFAEWICNIH KQPCHVVYTD FRPTPLQHYV FPMGGSGLYL VVDENEQFRE DNFLKLQDTF TKQTLGDGKR
301: GGKGGGRGGK GANASGGSDI YKIVKMIMEQ KFQPVIIFSF SRRECEQHAM SMSKLDFNTQ EEKDTVEHVF RNAVLCLNEE DRCLPAIELM LPLLQRGIAV
401: HHSGLLPVIK ELVELLFQEG LVKALFATET FAMGLNMPAK TVIFTAVKKW DGDSHRYIGS GEYIQMSGRA GRCGKDERGI CIIMIDEQME MNNLKDMVLG
501: KPAPLVSTFR LSYYSILNLM SRAEGQFTAE HVIRNSFHQF QYEKALPDIE KRVTKLEQEV ALLDASGEAQ VSEYHKLKLE IAQLEKKIMS KIMRPEIILY
601: FLVPGRLIKV REGGTDWGWG VVVNVVKKPS GGGYMVDTLL HCSPVSNENS LRPKPCPPRP GEKGEMHVVP VQLPLISALG QLRVSIPPDL RPLEARQSLP
701: KLNPVKDMDV RDSEIVELVN QVEELEKKLV AHPMHKHQDM DQIKCFERKA EVNHEVQQLK TKMRDSQLQK FREELKNRSR VLKKLGHIDA DGVVQLKGRA
801: ACLIDTGDEL LVTELMFNGT FNDLDHHQVA ALASCFIPGD KSTEQIQLRT ELARPLQQLQ DSARRIAEIQ HECKLDINVN EYVESTVRPF LMDVIYSWSK
901: GANFADVIQM TDIFEGSIIR SARRLDEFLN QLRAAANAVG EADLEKKFAA ASESLRRGIM FANSLYL

Best Arabidopsis Sequence Match ( AT2G06990.1 )
(BLAST)

001: MSAQMEEPET LGKRKESESS KLRSDETPTP EPRTKRRSLK RACVHEVAVP NDYTPTKEET IHGTLDNPVF NGDMAKTYPF KLDPFQSVSV ACLERKESIL
101: VSAHTSAGKT AVAEYAIAMA FRDKQRVIYT SPLKALSNQK YRELQHEFKD VGLMTGDVTL SPNASCLVMT TEILRAMLYR GSEVLKEVAW VIFDEIHYMK
201: DRERGVVWEE SIIFLPPAIK MVFLSATMSN ATEFAEWICY LHKQPCHVVY TDFRPTPLQH YAFPMGGGGL YLVVDDNEQF REDSFVKMQD TFPKPKSNDG
301: KKSANGKSGG RGAKGGGGPG DSDVYKIVKM IMERKFEPVI IFSFSRRECE QHALSMSKLD FNTDEEKEVV EQVFNNAMQC LNEEDRSLPA IELMLPLLQR
401: GIAVHHSGLL PVIKELVELL FQEGLVKALF ATETFAMGLN MPAKTVVFTA VKKWDGDSHR YIGSGEYIQM SGRAGRRGKD ERGICIIMID EQMEMNTLRD
501: MMLGKPAPLL STFRLSYYTI LNLLSRAEGQ FTAEHVIRHS FHQFQHEKAL PDIGNKVSKL EEEAAILNAS GEAEVAEYHN LQFDIAKHEK KLMSEIIRPE
601: RVLCFLDTGR LVKIREGGTD WGWGVVVNVV KNSSVGTGSA SSHGGGYIVD TLLHCSTGFS ENGAKPKPCP PRAGEKGEMH VVPVQLPLIS ALSRLRISVP
701: SDLRPVEARQ SILLALQELS SRFPLGFPKL HPVKDMNIQD TEIVDLVSQI EEVEQKLLAH PMHKSEDDQQ IKSFQRKAEV NYEIQQLKSK MRDSQLQKFR
801: DELKNRSRVL KKLGHIDADG VVQVKGRAAC LIDTGDELLV TELMFNGTFN DLDHHQVAAL ASCFIPVDKS NEQVNLRNEL TKPLQQLQDS ARKIAEIQHE
901: CKLEIDVEEY VESTIRPFLM DVIYSWSKGA SFAEIIQMTD IFEGSIIRSA RRLDEFLNQL RAAAEAVGES SLESKFAAAS ESLRRGIMFA NSLYL

Arabidopsis Description

HEN2DExH-box ATP-dependent RNA helicase DExH10 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVW2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.