Factsheet for Solyc12g017860.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400052548	Potato	cytosol	95.53	91.73
Solyc05g047520.2.1	Tomato	nucleus	82.98	83.33
KRH41401	Soybean	nucleus	79.79	76.84
KRH60115	Soybean	cytosol	77.77	75.59
Bra029783.1-P	Field mustard	cytosol	77.66	74.19
CDY44724	Canola	cytosol	77.77	73.99
AT2G06990.1	Thale cress	nucleus	78.09	73.77
CDY41593	Canola	cytosol	77.77	73.76
Os11t0176200-01	Rice	nucleus	76.06	71.29
TraesCS4A01G216300.1	Wheat	cytosol	75.64	70.82
HORVU2Hr1G028060.7	Barley	cytosol	75.53	70.58
TraesCS2B01G179600.1	Wheat	cytosol	75.21	70.28
TraesCS4D01G091400.1	Wheat	cytosol	75.64	70.26
TraesCS2D01G159900.1	Wheat	cytosol	75.0	70.08
EES02351	Sorghum	nucleus	74.57	69.82
TraesCS2A01G154400.1	Wheat	cytosol	75.11	69.69
Zm00001d008777_P008	Maize	nucleus	74.47	69.58
HORVU4Hr1G018990.9	Barley	plastid	74.57	67.6
GSMUA_Achr3P05450_001	Banana	nucleus	76.7	66.76
TraesCS4B01G094600.1	Wheat	nucleus	75.43	64.69
Solyc01g103080.2.1	Tomato	nucleus	47.02	44.6
Solyc06g005990.2.1	Tomato	cytosol	34.89	24.1
Solyc05g006530.2.1	Tomato	nucleus	25.11	20.45
Solyc02g086580.2.1	Tomato	cytosol	14.68	11.46
Solyc06g071620.2.1	Tomato	nucleus	19.79	9.24
Solyc06g082100.2.1	Tomato	nucleus	17.66	8.44
Solyc06g069480.2.1	Tomato	nucleus	17.77	8.0
Solyc08g068120.1.1	Tomato	cytosol, nucleus, plastid	11.6	7.51
Solyc06g065300.2.1	Tomato	cytosol	4.15	5.92
Solyc08g068110.1.1	Tomato	nucleus	3.94	5.25

Protein Annotations

Gene3D:1.10.3380.30	Gene3D:1.20.1500.20	MapMan:16.8.1.2.3.1	Gene3D:2.40.30.300	Gene3D:3.40.50.300	ncoils:Coil
InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003724
GO:GO:0003824	GO:GO:0004004	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006401	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0055087	GO:GO:0070478	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	UniProt:K4DDB4	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFAM:PF08148	PFAM:PF13234	PIRSF:PIRSF005198	PFscan:PS51192	PFscan:PS51194
PANTHER:PTHR12131	PANTHER:PTHR12131:SF6	SMART:SM00487	SMART:SM00490	SMART:SM01142	SUPFAM:SSF52540
InterPro:Ski2-like	InterPro:Ski2_C	EnsemblPlantsGene:Solyc12g017860.1	EnsemblPlants:Solyc12g017860.1.1	UniParc:UPI000276958E	InterPro:rRNA_proc-arch_dom
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr12:-:7587367..7602793

Molecular Weight (calculated)

105918.0 Da

IEP (calculated)

6.719

GRAVY (calculated)

-0.245

Length

940 amino acids

Sequence
(BLAST)

001: MVESPTLKRR LEEENEAESA SKRSRTCLHE EISVACLERK ESVLVSAHTS AGKTAVAEYA IAMSFRDKQK VIYTSPLKAL SNQKYRELSE EFSDVGLLTG
101: DVSISPNASC LVMTTEVLRA MLYGGSEVLK EVAWVIFDEI HYMKHRERGV VWEESIIFLP PAIKMVFLSA TMSNPMEFAE WICNIHKQPC HVVYTDFRPT
201: PLQHYAFPKG GSGLYLVVDD KDQFREDNFL KLQETFTKKK PGSSNANASG RSGKGGNASG VSDIYKIVKM IMARKFQPVI IFSFSRIDCE KHAMCMTKLD
301: FNTEEEKKAV EQVFHSAVVC LSEEDRNLPA IELMLPLLQR GIAVHHSGLL PVIKELVELL FQEGLIKALF ATETFAMGLN MPAKTVVFTS VKKWDGDAHR
401: YIGSGEYIQM SGRAGRRGKD ERGICIIMID EKMEMDNLKD MVSGKPDPLV SSFRLTYYSI LNLLSRTEGQ FTAEHVIKNS FHQFQYEKDL PDIGKRVSKL
501: EEEAALLDAS GDAEVAGYYK LRLEIAQFEK KLMAEITRPE RVLYFLLPGR LVKVREGGKD WGWGVVVNVV KKPPAALGSL PATLSASCAA GYIVDTLLHC
601: SLGSSENGSR PKPCPPRPGE KCEMHVVPVQ LPLISSLSKL RISVPSDLRP LEARQSIFLA VKELEKRFPE GLPKLNPVKD MGIEDPEVVN MVNQIEELEK
701: KFFSYQLHKS QNEHQLRSFQ RKAEVNHEIQ QLKSKMRESQ LQKFRDELRN RSRVLKKLGH IDTDGVVQLK GQAACLIETG DELLVTELMF NGTFNDLNHH
801: QVAALASCFI PGDRSEEKIQ LRDELEKPLQ QLQDSARRIA EIQHECKLEI DVDEYVVASV QPFLMDVIYC WSMGASFAEV IQMTDIFEGS ITRLARRLDE
901: FLNQLKAAAH AVGEVDLQNK FGAASDSIRR GIMFANSLYL

Best Arabidopsis Sequence Match ( AT2G06990.1 )
(BLAST)

001: MSAQMEEPET LGKRKESESS KLRSDETPTP EPRTKRRSLK RACVHEVAVP NDYTPTKEET IHGTLDNPVF NGDMAKTYPF KLDPFQSVSV ACLERKESIL
101: VSAHTSAGKT AVAEYAIAMA FRDKQRVIYT SPLKALSNQK YRELQHEFKD VGLMTGDVTL SPNASCLVMT TEILRAMLYR GSEVLKEVAW VIFDEIHYMK
201: DRERGVVWEE SIIFLPPAIK MVFLSATMSN ATEFAEWICY LHKQPCHVVY TDFRPTPLQH YAFPMGGGGL YLVVDDNEQF REDSFVKMQD TFPKPKSNDG
301: KKSANGKSGG RGAKGGGGPG DSDVYKIVKM IMERKFEPVI IFSFSRRECE QHALSMSKLD FNTDEEKEVV EQVFNNAMQC LNEEDRSLPA IELMLPLLQR
401: GIAVHHSGLL PVIKELVELL FQEGLVKALF ATETFAMGLN MPAKTVVFTA VKKWDGDSHR YIGSGEYIQM SGRAGRRGKD ERGICIIMID EQMEMNTLRD
501: MMLGKPAPLL STFRLSYYTI LNLLSRAEGQ FTAEHVIRHS FHQFQHEKAL PDIGNKVSKL EEEAAILNAS GEAEVAEYHN LQFDIAKHEK KLMSEIIRPE
601: RVLCFLDTGR LVKIREGGTD WGWGVVVNVV KNSSVGTGSA SSHGGGYIVD TLLHCSTGFS ENGAKPKPCP PRAGEKGEMH VVPVQLPLIS ALSRLRISVP
701: SDLRPVEARQ SILLALQELS SRFPLGFPKL HPVKDMNIQD TEIVDLVSQI EEVEQKLLAH PMHKSEDDQQ IKSFQRKAEV NYEIQQLKSK MRDSQLQKFR
801: DELKNRSRVL KKLGHIDADG VVQVKGRAAC LIDTGDELLV TELMFNGTFN DLDHHQVAAL ASCFIPVDKS NEQVNLRNEL TKPLQQLQDS ARKIAEIQHE
901: CKLEIDVEEY VESTIRPFLM DVIYSWSKGA SFAEIIQMTD IFEGSIIRSA RRLDEFLNQL RAAAEAVGES SLESKFAAAS ESLRRGIMFA NSLYL

Arabidopsis Description

HEN2DExH-box ATP-dependent RNA helicase DExH10 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVW2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.