Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G216300.1 | Wheat | cytosol | 97.83 | 98.61 |
| TraesCS2D01G159900.1 | Wheat | cytosol | 93.18 | 93.74 |
| HORVU4Hr1G018990.9 | Barley | plastid | 96.05 | 93.73 |
| Os11t0176200-01 | Rice | nucleus | 89.72 | 90.53 |
| TraesCS4B01G094600.1 | Wheat | nucleus | 97.23 | 89.78 |
| EES02351 | Sorghum | nucleus | 87.45 | 88.15 |
| Zm00001d008777_P008 | Maize | nucleus | 87.25 | 87.77 |
| VIT_11s0065g00340.t01 | Wine grape | cytosol | 79.05 | 80.4 |
| Solyc05g047520.2.1 | Tomato | nucleus | 72.33 | 78.21 |
| KRH41401 | Soybean | nucleus | 75.3 | 78.07 |
| KRH60115 | Soybean | cytosol | 74.01 | 77.46 |
| PGSC0003DMT400035614 | Potato | cytosol | 76.09 | 77.31 |
| Bra029783.1-P | Field mustard | cytosol | 74.11 | 76.22 |
| CDY44724 | Canola | cytosol | 74.21 | 76.01 |
| CDY41593 | Canola | cytosol | 74.31 | 75.88 |
| AT2G06990.1 | Thale cress | nucleus | 74.6 | 75.88 |
| Solyc12g017860.1.1 | Tomato | nucleus | 70.26 | 75.64 |
| PGSC0003DMT400052548 | Potato | cytosol | 72.63 | 75.08 |
| GSMUA_Achr3P05450_001 | Banana | nucleus | 79.15 | 74.17 |
| TraesCS7D01G010500.1 | Wheat | cytosol | 48.22 | 49.39 |
| TraesCS6D01G291500.1 | Wheat | plastid | 23.52 | 20.2 |
| TraesCS4D01G171000.1 | Wheat | nucleus | 13.83 | 11.39 |
| TraesCS7D01G199800.1 | Wheat | cytosol | 13.93 | 9.13 |
| TraesCS6D01G028200.1 | Wheat | cytosol | 17.59 | 8.16 |
| TraesCS4D01G247100.1 | Wheat | mitochondrion, peroxisome | 15.81 | 7.7 |
| TraesCS1D01G324400.1 | Wheat | plastid | 15.12 | 7.42 |
Protein Annotations
| Gene3D:1.10.3380.30 | Gene3D:1.20.1500.20 | MapMan:16.8.1.2.3.1 | Gene3D:2.40.30.300 | Gene3D:3.40.50.300 | ncoils:Coil |
| InterPro:DEAD/DEAH_box_helicase_dom | InterPro:EF_Hand_1_Ca_BS | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003724 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0006139 | GO:GO:0006401 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016787 | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 |
| PFAM:PF08148 | PFAM:PF13234 | PIRSF:PIRSF005198 | ScanProsite:PS00018 | PFscan:PS51192 | PFscan:PS51194 |
| PANTHER:PTHR12131 | PANTHER:PTHR12131:SF6 | SMART:SM00487 | SMART:SM00490 | SMART:SM01142 | SUPFAM:SSF52540 |
| InterPro:Ski2-like | InterPro:Ski2_C | EnsemblPlantsGene:TraesCS4D01G091400 | EnsemblPlants:TraesCS4D01G091400.1 | TIGR:cd00046 | TIGR:cd00079 |
| InterPro:rRNA_proc-arch_dom | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr4D:-:66315695..66321994
Molecular Weight (calculated)
113456.0 Da
IEP (calculated)
6.255
GRAVY (calculated)
-0.268
Length
1012 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEEVENTSKR KAPELDSEDS SAAAVMNGHQ SLPGSAAKRQ NLARSCIHEV AAPNGYDLSK DEAVHGTLSN PVFNGDMAKT YPFQLDPFQT VSIACLERNE
0101: SVLVSAHTSA GKTAIAEYAI AMSFRDKQRV IYTSPLKALS NQKYRELSQE FSDVGLMTGD VTLQPNATCL VMTTEILRGM LYRGSEVIKE VGWVIFDEIH
0201: YMKDRERGVV WEESIVFLPP AIKMVFLSAT MSNATEFAEW ICNLHKQPCH VVYTDFRPTP LQHYVFPIGG SGLYLVVDEN GQFREDNFLK LQDTFAKQPS
0301: QLDGKKSGGP KASGRIAKGG NASGTSDIYR IVKMIMERKF QPVIIFSFSR RECEHHAMSM SKLDFNTEEE KDSIEQVFRS AIFCLSEEDR GLPAIELMLP
0401: LLKRGIAVHH SGLLPIIKEL VELLFQEGLV KALFATETFA MGLNMPAKTV VFTSVKKWDG DSNRFIGSGE YIQMSGRAGR RGKDERGICV IMIDEQMEMS
0501: VIKDMVLGKP APLISTFRLS YYTILNLLSR AEGQFTAEHV IRNSFHQFQY EKALPEVVQK ITRLENEASL LGSSGENDLA EYHKLGLDIS ELEKKIMSEM
0601: IRPERALLYL VPGRLVKVRD GSTDWGWGVV VNVVKKPPAS SSLPPALSAS RNNNYIVDTL LHCSSSLSES GLRSKPCPPR PGEKGEMHVV PVPLPLVCGL
0701: SSIRISIPSD LRPPEARQNI LFAVQELGKR YPQGLPKLNP ITDMGIEEPE LVDLVHKLED LEQKLCSHPL HKSDQSEQQL SWYQRKAELN HEIQQLKSKM
0801: RDSQLQKFRD ELKNRSRVLK ILGHIDADGV LQLKGRAACL IDTGDELLVT ELMFNGTFND LDHHQVASVV SCFVPCEKSS EQIRLRNELS KPMMQLQEAA
0901: RKIAEVQREC KLDINVEEYV ESTCKPYLMD VIYCWSKSPE TFSSQGATFG EVTEMTDIFE GSIIRLVRRL DEFLNQLKAA AEAVGEVNLE SKFGSASESL
1001: RRGIMFANSL YL
0101: SVLVSAHTSA GKTAIAEYAI AMSFRDKQRV IYTSPLKALS NQKYRELSQE FSDVGLMTGD VTLQPNATCL VMTTEILRGM LYRGSEVIKE VGWVIFDEIH
0201: YMKDRERGVV WEESIVFLPP AIKMVFLSAT MSNATEFAEW ICNLHKQPCH VVYTDFRPTP LQHYVFPIGG SGLYLVVDEN GQFREDNFLK LQDTFAKQPS
0301: QLDGKKSGGP KASGRIAKGG NASGTSDIYR IVKMIMERKF QPVIIFSFSR RECEHHAMSM SKLDFNTEEE KDSIEQVFRS AIFCLSEEDR GLPAIELMLP
0401: LLKRGIAVHH SGLLPIIKEL VELLFQEGLV KALFATETFA MGLNMPAKTV VFTSVKKWDG DSNRFIGSGE YIQMSGRAGR RGKDERGICV IMIDEQMEMS
0501: VIKDMVLGKP APLISTFRLS YYTILNLLSR AEGQFTAEHV IRNSFHQFQY EKALPEVVQK ITRLENEASL LGSSGENDLA EYHKLGLDIS ELEKKIMSEM
0601: IRPERALLYL VPGRLVKVRD GSTDWGWGVV VNVVKKPPAS SSLPPALSAS RNNNYIVDTL LHCSSSLSES GLRSKPCPPR PGEKGEMHVV PVPLPLVCGL
0701: SSIRISIPSD LRPPEARQNI LFAVQELGKR YPQGLPKLNP ITDMGIEEPE LVDLVHKLED LEQKLCSHPL HKSDQSEQQL SWYQRKAELN HEIQQLKSKM
0801: RDSQLQKFRD ELKNRSRVLK ILGHIDADGV LQLKGRAACL IDTGDELLVT ELMFNGTFND LDHHQVASVV SCFVPCEKSS EQIRLRNELS KPMMQLQEAA
0901: RKIAEVQREC KLDINVEEYV ESTCKPYLMD VIYCWSKSPE TFSSQGATFG EVTEMTDIFE GSIIRLVRRL DEFLNQLKAA AEAVGEVNLE SKFGSASESL
1001: RRGIMFANSL YL
001: MSAQMEEPET LGKRKESESS KLRSDETPTP EPRTKRRSLK RACVHEVAVP NDYTPTKEET IHGTLDNPVF NGDMAKTYPF KLDPFQSVSV ACLERKESIL
101: VSAHTSAGKT AVAEYAIAMA FRDKQRVIYT SPLKALSNQK YRELQHEFKD VGLMTGDVTL SPNASCLVMT TEILRAMLYR GSEVLKEVAW VIFDEIHYMK
201: DRERGVVWEE SIIFLPPAIK MVFLSATMSN ATEFAEWICY LHKQPCHVVY TDFRPTPLQH YAFPMGGGGL YLVVDDNEQF REDSFVKMQD TFPKPKSNDG
301: KKSANGKSGG RGAKGGGGPG DSDVYKIVKM IMERKFEPVI IFSFSRRECE QHALSMSKLD FNTDEEKEVV EQVFNNAMQC LNEEDRSLPA IELMLPLLQR
401: GIAVHHSGLL PVIKELVELL FQEGLVKALF ATETFAMGLN MPAKTVVFTA VKKWDGDSHR YIGSGEYIQM SGRAGRRGKD ERGICIIMID EQMEMNTLRD
501: MMLGKPAPLL STFRLSYYTI LNLLSRAEGQ FTAEHVIRHS FHQFQHEKAL PDIGNKVSKL EEEAAILNAS GEAEVAEYHN LQFDIAKHEK KLMSEIIRPE
601: RVLCFLDTGR LVKIREGGTD WGWGVVVNVV KNSSVGTGSA SSHGGGYIVD TLLHCSTGFS ENGAKPKPCP PRAGEKGEMH VVPVQLPLIS ALSRLRISVP
701: SDLRPVEARQ SILLALQELS SRFPLGFPKL HPVKDMNIQD TEIVDLVSQI EEVEQKLLAH PMHKSEDDQQ IKSFQRKAEV NYEIQQLKSK MRDSQLQKFR
801: DELKNRSRVL KKLGHIDADG VVQVKGRAAC LIDTGDELLV TELMFNGTFN DLDHHQVAAL ASCFIPVDKS NEQVNLRNEL TKPLQQLQDS ARKIAEIQHE
901: CKLEIDVEEY VESTIRPFLM DVIYSWSKGA SFAEIIQMTD IFEGSIIRSA RRLDEFLNQL RAAAEAVGES SLESKFAAAS ESLRRGIMFA NSLYL
101: VSAHTSAGKT AVAEYAIAMA FRDKQRVIYT SPLKALSNQK YRELQHEFKD VGLMTGDVTL SPNASCLVMT TEILRAMLYR GSEVLKEVAW VIFDEIHYMK
201: DRERGVVWEE SIIFLPPAIK MVFLSATMSN ATEFAEWICY LHKQPCHVVY TDFRPTPLQH YAFPMGGGGL YLVVDDNEQF REDSFVKMQD TFPKPKSNDG
301: KKSANGKSGG RGAKGGGGPG DSDVYKIVKM IMERKFEPVI IFSFSRRECE QHALSMSKLD FNTDEEKEVV EQVFNNAMQC LNEEDRSLPA IELMLPLLQR
401: GIAVHHSGLL PVIKELVELL FQEGLVKALF ATETFAMGLN MPAKTVVFTA VKKWDGDSHR YIGSGEYIQM SGRAGRRGKD ERGICIIMID EQMEMNTLRD
501: MMLGKPAPLL STFRLSYYTI LNLLSRAEGQ FTAEHVIRHS FHQFQHEKAL PDIGNKVSKL EEEAAILNAS GEAEVAEYHN LQFDIAKHEK KLMSEIIRPE
601: RVLCFLDTGR LVKIREGGTD WGWGVVVNVV KNSSVGTGSA SSHGGGYIVD TLLHCSTGFS ENGAKPKPCP PRAGEKGEMH VVPVQLPLIS ALSRLRISVP
701: SDLRPVEARQ SILLALQELS SRFPLGFPKL HPVKDMNIQD TEIVDLVSQI EEVEQKLLAH PMHKSEDDQQ IKSFQRKAEV NYEIQQLKSK MRDSQLQKFR
801: DELKNRSRVL KKLGHIDADG VVQVKGRAAC LIDTGDELLV TELMFNGTFN DLDHHQVAAL ASCFIPVDKS NEQVNLRNEL TKPLQQLQDS ARKIAEIQHE
901: CKLEIDVEEY VESTIRPFLM DVIYSWSKGA SFAEIIQMTD IFEGSIIRSA RRLDEFLNQL RAAAEAVGES SLESKFAAAS ESLRRGIMFA NSLYL
Arabidopsis Description
HEN2DExH-box ATP-dependent RNA helicase DExH10 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVW2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.