CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60115	Soybean	cytosol	96.21	97.1
VIT_11s0065g00340.t01	Wine grape	cytosol	87.7	86.03
AT2G06990.1	Thale cress	nucleus	82.07	80.5
Bra029783.1-P	Field mustard	cytosol	81.15	80.49
CDY44724	Canola	cytosol	81.15	80.16
Solyc12g017860.1.1	Tomato	nucleus	76.84	79.79
CDY41593	Canola	cytosol	80.94	79.72
PGSC0003DMT400052548	Potato	cytosol	79.51	79.26
Os11t0176200-01	Rice	nucleus	78.48	76.37
HORVU2Hr1G028060.7	Barley	cytosol	77.77	75.45
TraesCS4A01G216300.1	Wheat	cytosol	77.56	75.4
EES02351	Sorghum	nucleus	77.46	75.3
TraesCS4D01G091400.1	Wheat	cytosol	78.07	75.3
TraesCS2B01G179600.1	Wheat	cytosol	77.56	75.25
TraesCS2D01G159900.1	Wheat	cytosol	77.25	74.95
Zm00001d008777_P008	Maize	nucleus	76.95	74.65
TraesCS2A01G154400.1	Wheat	cytosol	77.25	74.43
GSMUA_Achr3P05450_001	Banana	nucleus	80.23	72.5
HORVU4Hr1G018990.9	Barley	plastid	76.43	71.94
TraesCS4B01G094600.1	Wheat	nucleus	77.25	68.8
KRH46878	Soybean	nucleus	49.39	49.13
KRG98348	Soybean	cytosol	36.07	26.23
KRH74713	Soybean	nucleus	24.28	20.4
KRH07179	Soybean	endoplasmic reticulum, plastid	12.5	10.25
KRH43818	Soybean	nucleus	18.34	8.2
KRH13647	Soybean	cytosol	18.24	8.15
KRH54676	Soybean	nucleus	16.7	7.81
KRH16213	Soybean	nucleus	15.68	7.13

Protein Annotations

Gene3D:1.10.3380.30	Gene3D:1.20.1500.20	EntrezGene:100785694	MapMan:16.8.1.2.3.1	Gene3D:2.40.30.300	Gene3D:3.40.50.300
EMBL:ACUP02004763	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlantsGene:GLYMA_08G027700	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003724	GO:GO:0003824	GO:GO:0004004	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0006401	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787
GO:GO:0055087	GO:GO:0070478	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	UniProt:I1KPQ5	InterPro:IPR001650
InterPro:IPR014001	EnsemblPlants:KRH41401	ProteinID:KRH41401	ProteinID:KRH41401.1	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFAM:PF08148	PFAM:PF13234	PIRSF:PIRSF005198	PFscan:PS51192	PFscan:PS51194
PANTHER:PTHR12131	PANTHER:PTHR12131:SF6	SMART:SM00487	SMART:SM00490	SMART:SM01142	SUPFAM:SSF52540
InterPro:Ski2-like	InterPro:Ski2_C	UniParc:UPI0002337C4B	InterPro:rRNA_proc-arch_dom	SEG:seg	:

Description

hypothetical protein

Coordinates

chr8:-:2210113..2219292

Molecular Weight (calculated)

110078.0 Da

IEP (calculated)

6.772

GRAVY (calculated)

-0.293

Length

976 amino acids

Sequence
(BLAST)

001: MEIESPTLGK RREPELPVTE TTSMPKKARS SERTCVHEVA VPSSYVSSKD EELHGTLSNP LHNGPMAKSY PFTLDPFQQV SIACLERNES VLVSAHTSAG
101: KTAVAEYAIA MSFRDKQRVI YTSPLKALSN QKYRELSQEF TDVGLMTGDV TLSPNATCLV MTTEILRGML YRGSEVLKEV AWVIFDEIHY MKDRERGVVW
201: EESIIFLPPA IKMVFLSATM SNATEFAEWI CNIHKQPCHV VYTDFRPTPL QHYVFPMGGS GLYLVVDENE QFREDNFLKL QDTFTKQNLG DGKRGGKGAG
301: RGGKGGNASG GSDIYKIVKM IMERKFQPVI IFSFSRRECE QHAMSMSKLD FNSQEEKDTV EHVFQNAVLC LNEEDRNLPA IELMLPLLQR GIAVHHSGLL
401: PVIKELVELL FQEGLVKALF ATETFAMGLN MPAKTVIFTA VKKWDGDSHR YIGSGEYIQM SGRAGRRGKD ERGICIIMID EQMEMNNLKD MVLGKPAPLV
501: STFRLSYYSI LNLMSRAEGQ FTAEHVIRNS FHQFQYEKAL PDMEKRVSKL EQEVALLDAS GEAQVSEYHK LKLEIAQLEK KIMSKIIRPE IILYFLVPGR
601: LIKVREGGTD WGWGVVVNVV KKPSGGGYIV DTLLHCSPVS NENSSRPKPC PPRPGEKGEM HVVPVQLPLI SALGQLRVSI PPDLRPLEAR QSILLAVQEL
701: GNRFPQGLPK LNPVKDMDVR DSEIVELVNQ VEELEKKLFT HPMHKHQDMD QIKCFERKAE VNHEVQQLKT KMRDSQLQKF REELKNRSRV LKKLGHIDAD
801: GVVQLKGRAA CLIDTGDELL VTELMFNGTF NDLDHHQVAA LASCFIPGDK STEQIQLRTE LARPLQQLQD SARRIAEIQH ECKLDINVNE YVDSTVRPFL
901: MDVIYSWSKG ANFADVIQMT DIFEGSIIRS ARRLDEFLNQ LRAAANAVGE ADLEKKFAAA SESLRRGIMF ANSLYL

Best Arabidopsis Sequence Match ( AT2G06990.1 )
(BLAST)

001: MSAQMEEPET LGKRKESESS KLRSDETPTP EPRTKRRSLK RACVHEVAVP NDYTPTKEET IHGTLDNPVF NGDMAKTYPF KLDPFQSVSV ACLERKESIL
101: VSAHTSAGKT AVAEYAIAMA FRDKQRVIYT SPLKALSNQK YRELQHEFKD VGLMTGDVTL SPNASCLVMT TEILRAMLYR GSEVLKEVAW VIFDEIHYMK
201: DRERGVVWEE SIIFLPPAIK MVFLSATMSN ATEFAEWICY LHKQPCHVVY TDFRPTPLQH YAFPMGGGGL YLVVDDNEQF REDSFVKMQD TFPKPKSNDG
301: KKSANGKSGG RGAKGGGGPG DSDVYKIVKM IMERKFEPVI IFSFSRRECE QHALSMSKLD FNTDEEKEVV EQVFNNAMQC LNEEDRSLPA IELMLPLLQR
401: GIAVHHSGLL PVIKELVELL FQEGLVKALF ATETFAMGLN MPAKTVVFTA VKKWDGDSHR YIGSGEYIQM SGRAGRRGKD ERGICIIMID EQMEMNTLRD
501: MMLGKPAPLL STFRLSYYTI LNLLSRAEGQ FTAEHVIRHS FHQFQHEKAL PDIGNKVSKL EEEAAILNAS GEAEVAEYHN LQFDIAKHEK KLMSEIIRPE
601: RVLCFLDTGR LVKIREGGTD WGWGVVVNVV KNSSVGTGSA SSHGGGYIVD TLLHCSTGFS ENGAKPKPCP PRAGEKGEMH VVPVQLPLIS ALSRLRISVP
701: SDLRPVEARQ SILLALQELS SRFPLGFPKL HPVKDMNIQD TEIVDLVSQI EEVEQKLLAH PMHKSEDDQQ IKSFQRKAEV NYEIQQLKSK MRDSQLQKFR
801: DELKNRSRVL KKLGHIDADG VVQVKGRAAC LIDTGDELLV TELMFNGTFN DLDHHQVAAL ASCFIPVDKS NEQVNLRNEL TKPLQQLQDS ARKIAEIQHE
901: CKLEIDVEEY VESTIRPFLM DVIYSWSKGA SFAEIIQMTD IFEGSIIRSA RRLDEFLNQL RAAAEAVGES SLESKFAAAS ESLRRGIMFA NSLYL

Arabidopsis Description

HEN2DExH-box ATP-dependent RNA helicase DExH10 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVW2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.