CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 2
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001251	Potato	nucleus	17.82	76.26
Os02t0617500-01	Rice	cytosol	38.91	74.32
CDY49767	Canola	nucleus	61.01	64.19
Bra033025.1-P	Field mustard	nucleus	58.91	64.08
CDY03992	Canola	nucleus	60.92	63.88
VIT_14s0066g00880.t01	Wine grape	nucleus	67.82	63.29
AT3G27730.2	Thale cress	nucleus	60.5	62.99
Solyc02g086580.2.1	Tomato	cytosol	62.1	61.38
GSMUA_Achr1P12000_001	Banana	cytosol, nucleus, plastid	55.04	59.33
HORVU4Hr1G049830.57	Barley	nucleus	53.78	57.04
TraesCS4D01G171000.1	Wheat	nucleus	53.78	52.07
TraesCS4A01G136200.1	Wheat	nucleus	55.71	51.76
TraesCS4B01G168700.1	Wheat	nucleus	55.38	51.44
Zm00001d051111_P001	Maize	nucleus	55.46	51.04
OQU85316	Sorghum	nucleus	55.38	50.89
PGSC0003DMT400001255	Potato	cytosol, mitochondrion	29.16	47.15
KRH46878	Soybean	nucleus	11.51	13.97
KRH60115	Soybean	cytosol	10.17	12.51
KRH41401	Soybean	nucleus	10.25	12.5
KRH74713	Soybean	nucleus	11.93	12.22
KRG98348	Soybean	cytosol	12.69	11.25
KRH43818	Soybean	nucleus	20.59	11.22
KRH13647	Soybean	cytosol	20.59	11.22
KRH54676	Soybean	nucleus	19.16	10.92
KRH16213	Soybean	nucleus	18.24	10.11

Protein Annotations

Gene3D:1.10.10.2530	Gene3D:1.10.150.20	Gene3D:1.10.3380.10	MapMan:13.3.6.5.1.1	Gene3D:3.40.50.300	UniProt:A0A0R0FWV1
EMBL:ACUP02009946	InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlantsGene:GLYMA_16G072300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004004	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	EnsemblPlants:KRH07179	ProteinID:KRH07179	ProteinID:KRH07179.1	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFAM:PF02889	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR24031
PANTHER:PTHR24031:SF388	SMART:SM00487	SMART:SM00490	SMART:SM00973	SUPFAM:SSF158702	SUPFAM:SSF52540
InterPro:Sec63-dom	UniParc:UPI0006EE0577	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr16:+:7277776..7285867

Molecular Weight (calculated)

135355.0 Da

IEP (calculated)

6.948

GRAVY (calculated)

-0.366

Length

1190 amino acids

Sequence
(BLAST)

0001: MDSYSLKSVF DLPAPFRSCF SFRYFNSLQS ECFPICFHSD VNMVISAPTG SGKTVLFELC ILRLLSSFIT AEERFLHLKG SLKTIYIAPS KALVQEKLRD
0101: WNKKFGPWGI NCLELTGDNE SYTPRNILEA DIILTTPEKF DAVSRYGIES GGLSFFSDIS LLLIDEVHLL NDPRGAALEA IVSRIKIVSG NPKMKSNPLA
0201: QVRFLAVSAT IPNIEDLAKW LEVPDQGIKR FGEEMRPVKL TTKVFGYAPA KNDFLFEKRL QNYIFDILMQ YSRGKSALVF CSTRKGAQEA AQRLSQIVMT
0301: FGQSNPFIKN REQQDRLREA SLSCSDKQMQ SYILYGVGYH NGGLCLKDRS IVEGLFLKGD IQVLCTTNTL AHGINLPAHT VVIKSTQHFN KEKGLYMEYD
0401: RSTILQMCGR AGRPPFDDTG MVIIMTRRET VHLYENLLNG CEVVESQLLS CVTEHLLAEI VQLTVSDITK AIEWLKRSYL YNPMNYAIKK GISGDRLEKH
0501: VQDICVRKVN ELSQNDMVWV DEDGFLLRPL DPGRLMTKYY LRFDTMKQIM RTPENCSLED ALHVVCCAEE IAWIQLRRNE KKLLNEINAD KDGRLRFHIL
0601: GDKRKKKKRI QTREEKIFIL ANDCLTGDPS VHDLSLIQDM NSICSNGCRI AKCLKDYFVY KRNYKGTVNS ALLAKSLGQK LWDDSPYLLK QLPGIGMVTA
0701: KALHSMGVRS FEELADADPR RIELVTGRKY PFGNHIKDSL LSLPPKVDVT LAEIESHIQG NSKLVVTLAR ISQSGQSVKR HYADMIVGSE EDNTILFHEK
0801: IRVDQFSSPY SATIFVPIAQ GKQTIKVDFI FEEYIGIDVH QKLSFTRESN SIVLLKRNKK QASCPPPEEI YVIEDDNITV PRLPTKELCK LNEDRDSIPS
0901: FDLLDESFEE VEGVRAFGVV EDECKSITEK TVFDHIREKA KNFSLLSAYD NIHFPSLEVL LSRNHAREKR PDHRHEVVVL DDEDRPEVPQ RNDVNLQVEL
1001: RKAEQDDIKF YLNDHCTTGS SNIVDTGVFL PEPEAITHEK STEETVFDHI RRKSKDFPPI NKLNCAESII HKTELFSKIN PSPPSSLSDA FGVARETNSL
1101: EVTDNMLTSY MKTAAEVEKY TSSIQEERKR SSDPGSFPES SKKQRCASRD SKEEKHSSSE IRRQCCSLES TSQMKEIESF LGFKSVFSFL

Best Arabidopsis Sequence Match ( AT3G27730.1 )
(BLAST)

0001: MDTHTLKSVS DLPGNFRSAF SFRYFNSLQS ECFPLCFHSD INMIISAPTG SGKTVLFELC ILRLFSKSIS KEGSFLHAKG ALKTVYISPS KALVQEKLRD
0101: WNQKFNSWGI SCLELTGDNE TYSTKNIQDA DIILTTPEKF DAVSRYRVTS GGLGFFSDIA LVLIDEVHLL NDPRGAALEA IVSRLKILSS NHELRSSTLA
0201: SVRLLAVSAT IPNIEDLAEW LKVPTAGIKR FGEEMRPVKL TTKVFGYAAA KNDFLFEKRL QNYIYDILMQ YSKGKSALVF CSTRKGAQEA AQKLAQTAMT
0301: YGYSNPFIKS REQLERLREA SPMCSDKQMQ SYILQGVGYH NGGLCQKDRS LVEGLFLNGD IQVICTTNTL AHGINLPAHT VVIKSTQHFN KEKGHYMEYD
0401: RSTLLQMSGR AGRPPFDDTG MVIIMTRRET VHLYENLLNG CEVVESQLLP CLIEHLTAEI VQLTISDITR AIEWMKCSYL YVRMKKNPEN YAIKKGIPKD
0501: RVEKHLQELC LQKINELSQY QMIWTDTDGF VLKPEEPGRL MTKYYLKFET MKYIINTPTS YSLDEALHIV CHAEEISWIQ LRRNEKKTLN DVNADKEGRL
0601: RFHINDNKGK RKKRIQTREE KLFVLANDWL TGDPSVHDLS MTQDANSICS NGSRIARCMK EYFIYKKNYK GTLSSTLLAK SLYQKLWDDS PYLLKQLPGI
0701: GMVTAKALHS MGVRSFEALA EADPRRIEIV TGRKYPFGNT IKESLSSLPP KVEIKVEEVD CQKQGISKLA VTLSRVSQPL QSTKRHYADL IVGSEEENLI
0801: HFHEKIRMED FSSPYSVTVL LERPHQQTKV TVKADLIFEE YIGIDLHETL LLKKANNNKV NYKSENRMPQ YYPPMASACI ADDDNPVTSG PSNRKDKKDD
0901: MPSFKLIDDD SEEEKEPYVT MEEDDCVIIN EHTVFDHIRE KAKCFPSLNP LNPTSSPASG KSILKRKSLV ENNSPELDPL FQYDSVFDLP TNTKDIKQSA
1001: QQITSPGYAS FAEKTETERP FSDETIFNYI RKRSKNSPAL ATSKIENPIT ISSQEGRNAE ISPYRTYGLL VSPATKIPRI TSDAPSEILS FDISMVKRSD
1101: TSLEQTKGFC STLAGKSNVS DSFLGFKSIF SFL

Arabidopsis Description

RCKDNA helicase ROCK-N-ROLLERS [Source:UniProtKB/TrEMBL;Acc:A0A1I9LN50]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.