Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os02t0617500-01 | Rice | cytosol | 49.82 | 89.73 |
| TraesCS4B01G168700.1 | Wheat | nucleus | 95.63 | 83.76 |
| TraesCS4A01G136200.1 | Wheat | nucleus | 95.37 | 83.53 |
| TraesCS4D01G171000.1 | Wheat | nucleus | 91.18 | 83.24 |
| PGSC0003DMT400001251 | Potato | nucleus | 17.38 | 70.14 |
| OQU85316 | Sorghum | nucleus | 77.54 | 67.18 |
| Zm00001d051111_P001 | Maize | nucleus | 77.36 | 67.13 |
| GSMUA_Achr1P12000_001 | Banana | cytosol, nucleus, plastid | 59.54 | 60.51 |
| CDY49767 | Canola | nucleus | 56.42 | 55.97 |
| Bra033025.1-P | Field mustard | nucleus | 54.28 | 55.67 |
| CDY03992 | Canola | nucleus | 55.97 | 55.33 |
| AT3G27730.2 | Thale cress | nucleus | 55.35 | 54.33 |
| KRH07179 | Soybean | endoplasmic reticulum, plastid | 57.04 | 53.78 |
| Solyc02g086580.2.1 | Tomato | cytosol | 56.6 | 52.74 |
| VIT_14s0066g00880.t01 | Wine grape | nucleus | 59.45 | 52.31 |
| PGSC0003DMT400001255 | Potato | cytosol, mitochondrion | 24.78 | 37.77 |
| HORVU2Hr1G028060.7 | Barley | cytosol | 12.12 | 13.52 |
| HORVU7Hr1G001080.1 | Barley | cytosol, nucleus, plastid | 12.48 | 13.45 |
| HORVU1Hr1G048420.1 | Barley | cytosol | 0.98 | 13.41 |
| HORVU4Hr1G018990.9 | Barley | plastid | 12.03 | 13.02 |
| HORVU6Hr1G076860.2 | Barley | plastid | 12.57 | 11.79 |
| HORVU6Hr1G025670.1 | Barley | nucleus | 14.08 | 11.56 |
| HORVU1Hr1G065680.1 | Barley | nucleus | 17.29 | 11.45 |
| HORVU7Hr1G040480.2 | Barley | cytosol, mitochondrion | 20.94 | 10.93 |
| HORVU4Hr1G068170.2 | Barley | cytosol, nucleus | 20.23 | 10.87 |
| HORVU6Hr1G004350.3 | Barley | cytosol, mitochondrion, nucleus | 21.03 | 10.78 |
| HORVU0Hr1G026710.1 | Barley | plastid | 17.83 | 10.37 |
| HORVU1Hr1G018080.31 | Barley | cytosol, nucleus, plastid | 2.58 | 9.93 |
Protein Annotations
| Gene3D:1.10.10.2530 | Gene3D:1.10.150.20 | Gene3D:1.10.3380.10 | MapMan:13.3.6.5.1.1 | Gene3D:3.40.50.300 | UniProt:A0A287NZA2 |
| InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005524 |
| EnsemblPlantsGene:HORVU4Hr1G049830 | EnsemblPlants:HORVU4Hr1G049830.57 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF02889 | PFscan:PS51192 | PFscan:PS51194 |
| PANTHER:PTHR24031 | PANTHER:PTHR24031:SF388 | SMART:SM00487 | SMART:SM00490 | SMART:SM00973 | SUPFAM:SSF158702 |
| SUPFAM:SSF52540 | InterPro:Sec63-dom | UniParc:UPI000B486BBD | SEG:seg | : | : |
Description
No Description!
Coordinates
chrchr4H:-:405694553..405707114
Molecular Weight (calculated)
126190.0 Da
IEP (calculated)
7.892
GRAVY (calculated)
-0.281
Length
1122 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAAMGSLGDS YELRCVSDLP PPFRPVFGFR YFNSLQSECF PVCFLSDVNM VVSAPTGSGK TVLFELCILR LLSRFLTMEW RFNLIKGTLK TIYIAPMKAL
0101: VQEKMREWKV KLGSLGINCL EMTGDSEFFN KKAIHDSDLI LTTPEKFDSM SRNGIRDGGL GFFSDIALVL IDEVHLLNDP RGAALEAVVS RIKMLSRLGN
0201: MKSAPLANVR FIAVSATISN AEDIAEWLLA PPEGIKRFGE EMRPVKLTTK VLGYAPAKND FLFERRLQSF IFDILMQHSR GKSALVFCST RKGAQEAAQC
0301: LSQTAGSLGY SNPFMKSMQQ YEHLREASLT CSDKQLQSCI VHGVGFHNGG LCLKDRSLVE ELFLKGDLQI LCTTNTLAHG INLPAHTVVI KSTQFFNKEK
0401: GSYVEYERSM VLQMCGRAGR PPFDDTGTVV IMTRRETVHL YENLLSGCEM VESQLLPCAV EHLNAEIVQL TVSDITLAIE WLKCSYLYIR IKKNPEHYGI
0501: KKGIPRDLLE KQMRDICIEK IHELGEYGLI WTDGDGFSLK PLEPGRLMTK FYLKFDTMKL IVKASACCSM EDLLHIICRS AEISWIQLRR NEKKTLNDIN
0601: SDKEGRLRFH VLSENGKKKK RIQTREDKIF VLANDYLTGD PLMHDLSLNQ ETNSICSNGC RIAKCMKEYF IYKRSYRSAV NSMLLAKCLD QKLWESSLFL
0701: LKQLPGIGTV TAKALKTAGV DSFESLATAD ARKLETATGR NYPFGNQIKD SLSSLPPKID IQIEVEDAGN RQGKSTITVT LSRQSQAVRS SKQNYFDMIV
0801: GSEEDNMILF HEKIRAQEFS SPYSVKLLVP CPQSARVTLK VDLIFEEHVG IDIHKKHVVS REDDLHVTKA YGTEKPKPLS SLPADICSVS SRTARTIPAQ
0901: AHIGRSPLSK EVCVIEDDDD ANVPDKADNM PRTRTFNNLA SLEVPSFDLM LEEDNGDMQD VSFPEAAKAE CRSASSSTIF DHIRKKSRDF PTLMLSKSMD
1001: SSYEPLILKK MKTSRDQFNL DQGILHANEV TPMDSEHSEL RVSPTNTSEK CRMILSRTSE MGRSLFAEKV YSPFEKSKSL NRIPDENSVQ FADRRGSLSE
1101: KSKSLSRIPD ENSIQFAVRT DS
0101: VQEKMREWKV KLGSLGINCL EMTGDSEFFN KKAIHDSDLI LTTPEKFDSM SRNGIRDGGL GFFSDIALVL IDEVHLLNDP RGAALEAVVS RIKMLSRLGN
0201: MKSAPLANVR FIAVSATISN AEDIAEWLLA PPEGIKRFGE EMRPVKLTTK VLGYAPAKND FLFERRLQSF IFDILMQHSR GKSALVFCST RKGAQEAAQC
0301: LSQTAGSLGY SNPFMKSMQQ YEHLREASLT CSDKQLQSCI VHGVGFHNGG LCLKDRSLVE ELFLKGDLQI LCTTNTLAHG INLPAHTVVI KSTQFFNKEK
0401: GSYVEYERSM VLQMCGRAGR PPFDDTGTVV IMTRRETVHL YENLLSGCEM VESQLLPCAV EHLNAEIVQL TVSDITLAIE WLKCSYLYIR IKKNPEHYGI
0501: KKGIPRDLLE KQMRDICIEK IHELGEYGLI WTDGDGFSLK PLEPGRLMTK FYLKFDTMKL IVKASACCSM EDLLHIICRS AEISWIQLRR NEKKTLNDIN
0601: SDKEGRLRFH VLSENGKKKK RIQTREDKIF VLANDYLTGD PLMHDLSLNQ ETNSICSNGC RIAKCMKEYF IYKRSYRSAV NSMLLAKCLD QKLWESSLFL
0701: LKQLPGIGTV TAKALKTAGV DSFESLATAD ARKLETATGR NYPFGNQIKD SLSSLPPKID IQIEVEDAGN RQGKSTITVT LSRQSQAVRS SKQNYFDMIV
0801: GSEEDNMILF HEKIRAQEFS SPYSVKLLVP CPQSARVTLK VDLIFEEHVG IDIHKKHVVS REDDLHVTKA YGTEKPKPLS SLPADICSVS SRTARTIPAQ
0901: AHIGRSPLSK EVCVIEDDDD ANVPDKADNM PRTRTFNNLA SLEVPSFDLM LEEDNGDMQD VSFPEAAKAE CRSASSSTIF DHIRKKSRDF PTLMLSKSMD
1001: SSYEPLILKK MKTSRDQFNL DQGILHANEV TPMDSEHSEL RVSPTNTSEK CRMILSRTSE MGRSLFAEKV YSPFEKSKSL NRIPDENSVQ FADRRGSLSE
1101: KSKSLSRIPD ENSIQFAVRT DS
0001: MDTHTLKSVS DLPGNFRSAF SFRYFNSLQS ECFPLCFHSD INMIISAPTG SGKTVLFELC ILRLFSKSIS KEGSFLHAKG ALKTVYISPS KALVQEKLRD
0101: WNQKFNSWGI SCLELTGDNE TYSTKNIQDA DIILTTPEKF DAVSRYRVTS GGLGFFSDIA LVLIDEVHLL NDPRGAALEA IVSRLKILSS NHELRSSTLA
0201: SVRLLAVSAT IPNIEDLAEW LKVPTAGIKR FGEEMRPVKL TTKVFGYAAA KNDFLFEKRL QNYIYDILMQ YSKGKSALVF CSTRKGAQEA AQKLAQTAMT
0301: YGYSNPFIKS REQLERLREA SPMCSDKQMQ SYILQGVGYH NGGLCQKDRS LVEGLFLNGD IQVICTTNTL AHGINLPAHT VVIKSTQHFN KEKGHYMEYD
0401: RSTLLQMSGR AGRPPFDDTG MVIIMTRRET VHLYENLLNG CEVVESQLLP CLIEHLTAEI VQLTISDITR AIEWMKCSYL YVRMKKNPEN YAIKKGIPKD
0501: RVEKHLQELC LQKINELSQY QMIWTDTDGF VLKPEEPGRL MTKYYLKFET MKYIINTPTS YSLDEALHIV CHAEEISWIQ LRRNEKKTLN DVNADKEGRL
0601: RFHINDNKGK RKKRIQTREE KLFVLANDWL TGDPSVHDLS MTQDANSICS NGSRIARCMK EYFIYKKNYK GTLSSTLLAK SLYQKLWDDS PYLLKQLPGI
0701: GMVTAKALHS MGVRSFEALA EADPRRIEIV TGRKYPFGNT IKESLSSLPP KVEIKVEEVD CQKQGISKLA VTLSRVSQPL QSTKRHYADL IVGSEEENLI
0801: HFHEKIRMED FSSPYSVTVL LERPHQQTKV TVKADLIFEE YIGIDLHETL LLKKANNNKV NYKSENRMPQ YYPPMASACI ADDDNPVTSG PSNRKDKKDD
0901: MPSFKLIDDD SEEEKEPYVT MEEDDCVIIN EHTVFDHIRE KAKCFPSLNP LNPTSSPASG KSILKRKSLV ENNSPELDPL FQYDSVFDLP TNTKDIKQSA
1001: QQITSPGYAS FAEKTETERP FSDETIFNYI RKRSKNSPAL ATSKIENPIT ISSQEGRNAE ISPYRTYGLL VSPATKIPRI TSDAPSEILS FDISMVKRSD
1101: TSLEQTKGFC STLAEVINHS SQIGEVSHHL HNFFMIILIK RLF
0101: WNQKFNSWGI SCLELTGDNE TYSTKNIQDA DIILTTPEKF DAVSRYRVTS GGLGFFSDIA LVLIDEVHLL NDPRGAALEA IVSRLKILSS NHELRSSTLA
0201: SVRLLAVSAT IPNIEDLAEW LKVPTAGIKR FGEEMRPVKL TTKVFGYAAA KNDFLFEKRL QNYIYDILMQ YSKGKSALVF CSTRKGAQEA AQKLAQTAMT
0301: YGYSNPFIKS REQLERLREA SPMCSDKQMQ SYILQGVGYH NGGLCQKDRS LVEGLFLNGD IQVICTTNTL AHGINLPAHT VVIKSTQHFN KEKGHYMEYD
0401: RSTLLQMSGR AGRPPFDDTG MVIIMTRRET VHLYENLLNG CEVVESQLLP CLIEHLTAEI VQLTISDITR AIEWMKCSYL YVRMKKNPEN YAIKKGIPKD
0501: RVEKHLQELC LQKINELSQY QMIWTDTDGF VLKPEEPGRL MTKYYLKFET MKYIINTPTS YSLDEALHIV CHAEEISWIQ LRRNEKKTLN DVNADKEGRL
0601: RFHINDNKGK RKKRIQTREE KLFVLANDWL TGDPSVHDLS MTQDANSICS NGSRIARCMK EYFIYKKNYK GTLSSTLLAK SLYQKLWDDS PYLLKQLPGI
0701: GMVTAKALHS MGVRSFEALA EADPRRIEIV TGRKYPFGNT IKESLSSLPP KVEIKVEEVD CQKQGISKLA VTLSRVSQPL QSTKRHYADL IVGSEEENLI
0801: HFHEKIRMED FSSPYSVTVL LERPHQQTKV TVKADLIFEE YIGIDLHETL LLKKANNNKV NYKSENRMPQ YYPPMASACI ADDDNPVTSG PSNRKDKKDD
0901: MPSFKLIDDD SEEEKEPYVT MEEDDCVIIN EHTVFDHIRE KAKCFPSLNP LNPTSSPASG KSILKRKSLV ENNSPELDPL FQYDSVFDLP TNTKDIKQSA
1001: QQITSPGYAS FAEKTETERP FSDETIFNYI RKRSKNSPAL ATSKIENPIT ISSQEGRNAE ISPYRTYGLL VSPATKIPRI TSDAPSEILS FDISMVKRSD
1101: TSLEQTKGFC STLAEVINHS SQIGEVSHHL HNFFMIILIK RLF
Arabidopsis Description
RCKDNA helicase ROCK-N-ROLLERS [Source:UniProtKB/TrEMBL;Acc:A0A1I9LN50]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.