Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G133400.3 | Wheat | cytosol | 97.37 | 97.37 |
| TraesCS6B01G161800.5 | Wheat | nucleus | 96.64 | 96.56 |
| KXG29518 | Sorghum | cytosol | 82.96 | 82.71 |
| Zm00001d015314_P003 | Maize | cytosol | 83.17 | 80.52 |
| PGSC0003DMT400053716 | Potato | cytosol, mitochondrion | 4.02 | 73.33 |
| GSMUA_Achr9P03710_001 | Banana | cytosol | 66.5 | 68.92 |
| VIT_06s0004g05970.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 55.08 | 68.89 |
| CDX99082 | Canola | cytosol | 56.25 | 64.35 |
| KRG98348 | Soybean | cytosol | 62.98 | 64.16 |
| Bra018181.1-P | Field mustard | nucleus | 61.67 | 62.86 |
| Solyc06g005990.2.1 | Tomato | cytosol | 62.33 | 62.6 |
| AT3G46960.1 | Thale cress | nucleus | 61.52 | 62.44 |
| CDX86107 | Canola | nucleus | 61.3 | 62.3 |
| HORVU1Hr1G048420.1 | Barley | cytosol | 2.19 | 36.59 |
| HORVU2Hr1G028060.7 | Barley | cytosol | 25.31 | 34.39 |
| HORVU7Hr1G001080.1 | Barley | cytosol, nucleus, plastid | 25.9 | 34.01 |
| HORVU4Hr1G018990.9 | Barley | plastid | 25.02 | 32.98 |
| HORVU1Hr1G018080.31 | Barley | cytosol, nucleus, plastid | 5.63 | 26.37 |
| HORVU6Hr1G076860.2 | Barley | plastid | 18.22 | 20.82 |
| HORVU4Hr1G049830.57 | Barley | nucleus | 11.56 | 14.08 |
| HORVU6Hr1G004350.3 | Barley | cytosol, mitochondrion, nucleus | 15.95 | 9.95 |
| HORVU7Hr1G040480.2 | Barley | cytosol, mitochondrion | 15.07 | 9.58 |
| HORVU4Hr1G068170.2 | Barley | cytosol, nucleus | 14.63 | 9.57 |
| HORVU1Hr1G065680.1 | Barley | nucleus | 11.34 | 9.15 |
| HORVU0Hr1G026710.1 | Barley | plastid | 12.66 | 8.97 |
Protein Annotations
| Gene3D:1.10.3380.30 | Gene3D:1.20.1500.20 | MapMan:16.8.1.2.6.1 | Gene3D:2.40.30.300 | Gene3D:3.40.50.300 | UniProt:A0A287TMR2 |
| ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003724 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0006139 | GO:GO:0006401 | GO:GO:0006810 |
| GO:GO:0006813 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016441 |
| GO:GO:0016787 | GO:GO:0035864 | GO:GO:0040029 | GO:GO:0055087 | GO:GO:0070478 | EnsemblPlantsGene:HORVU6Hr1G025670 |
| EnsemblPlants:HORVU6Hr1G025670.1 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:P-loop_NTPase |
| PFAM:PF00270 | PFAM:PF00271 | PFAM:PF08148 | PFAM:PF13234 | PIRSF:PIRSF005198 | PFscan:PS51192 |
| PFscan:PS51194 | PANTHER:PTHR12131 | PANTHER:PTHR12131:SF8 | SMART:SM00487 | SMART:SM00490 | SMART:SM01142 |
| SUPFAM:SSF52540 | InterPro:Ski2-like | InterPro:Ski2_C | UniParc:UPI000B4756CD | InterPro:rRNA_proc-arch_dom | SEG:seg |
Description
No Description!
Coordinates
chrchr6H:-:93642158..93667794
Molecular Weight (calculated)
153279.0 Da
IEP (calculated)
5.705
GRAVY (calculated)
-0.411
Length
1367 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDDLTASPAS EVPFRISFSG HGGHLRLDPT PHPPNPVPDF VLPPAYPPES PSSVKEYLEA NYLNPELYVP TAANDGRVWD VDWFDLARPP LEPSAPRTML
0101: VPAWEPPFRR RSLSSSSEQQ VWDPESVQME MSQVFDSGNG GMVPRMPGPA KDFVRGRVNS RPFRPGGLQD DAAEAAALEK AFPEGARNGD WVRELMSGGP
0201: ALNAPPGFPK GLDLGQLKEY NSHWKCFQDG EHVEEPASSS NDTTDKYSVQ FDDLFKIAWE EDDVNIVPHE DDCELARDEG ANDVNERKVD KLQDASETLP
0301: MADTDKLEAN IRGDISEAQT DLDKMLSSEV RDTRRETSGL VDDKPAQEGT DWALVVGDNS IVTNFHKLVP DMAIDYPFEL DKFQKEAIYY LEKGESVFVA
0401: AHTSAGKTVV AEYAFALASK HCTRAVYTAP IKTISNQKYR DFCGKFDVGL LTGDVSIRPE ATCLIMTTEI LRSMLYRGAD IIRDIEWVIF DEVHYVNDAE
0501: RGVVWEEVII MLPKHINIVL LSATVPNTVE FADWIGRTKQ KKIRVTSTNK RPVPLEHCLF YSGEVYKVCE KDIFLTQGFR DAKDAFKMKN ANKFGAKPGT
0601: KSGTPAVRAG TQGRNPDTSS KGRDQKLPKH HQTNSGAAAI QQNTSGSRRS ESSFWMPLIN NLLKKSLVPV VIFCFSKNRC DRSADSMFGA DLTSNSDKSE
0701: IRVFCDKAFS RLKGSDRNLP QVVGIQSLLR RGIGVHHAGL LPIVKEVVEM LFCRGVIKVL FSTETFAMGV NAPARTVVFD TLRKFDGKEH RRLLPGEYIQ
0801: MAGRAGRRGL DTIGTVIMMC RDEIPEESDL KNLLVGKPTR LESQFRLTYT MILHLLRVEE LKVEDMLKRS FAEFHAQKDL PEKEKLLLQM LRQPTKTIEC
0901: IKGEPSIEEY YDMFLEAEEH REFVTEAIMQ LHTTQQFLAP GRLVVVKSKS DDDHLLGVIV KNPSVALKQY VVLVLTCDST SSALSPNLSS QNEKGPGDSQ
1001: GYLVILPKGK RGMDDDFFSS SRTRKSSGVI NVKLPYTGDA SGMGFEVRAV ENKEIISICT SKIKIDQAGL LEDISKTAYS KTVQMLIKEQ PDGKYPPALD
1101: AIKDLKMKDM DQVKRYHAHN NLLEEMSKNK CHGCIKLKEH KILMKDQKVH KDRLDQLKYQ MSDEALQQMP QFQGRIDVLK EIHYIDSDLV VQLKGRVACE
1201: MNSGEELIST ECLFENQLDE LEPEEAVAIM SAFVFQQRNA SEPSLTPKLA DAKKRLYDTA ISLGQLQKRH EVPVDPEEYA RDNLKFGLVE VVYEWAKGTP
1301: FADICELTDV SEGLIVRTIV RLDETCREFR NAASIMGNSA LYKKMEIASN AIKRDIVFAA SLYVTGI
0101: VPAWEPPFRR RSLSSSSEQQ VWDPESVQME MSQVFDSGNG GMVPRMPGPA KDFVRGRVNS RPFRPGGLQD DAAEAAALEK AFPEGARNGD WVRELMSGGP
0201: ALNAPPGFPK GLDLGQLKEY NSHWKCFQDG EHVEEPASSS NDTTDKYSVQ FDDLFKIAWE EDDVNIVPHE DDCELARDEG ANDVNERKVD KLQDASETLP
0301: MADTDKLEAN IRGDISEAQT DLDKMLSSEV RDTRRETSGL VDDKPAQEGT DWALVVGDNS IVTNFHKLVP DMAIDYPFEL DKFQKEAIYY LEKGESVFVA
0401: AHTSAGKTVV AEYAFALASK HCTRAVYTAP IKTISNQKYR DFCGKFDVGL LTGDVSIRPE ATCLIMTTEI LRSMLYRGAD IIRDIEWVIF DEVHYVNDAE
0501: RGVVWEEVII MLPKHINIVL LSATVPNTVE FADWIGRTKQ KKIRVTSTNK RPVPLEHCLF YSGEVYKVCE KDIFLTQGFR DAKDAFKMKN ANKFGAKPGT
0601: KSGTPAVRAG TQGRNPDTSS KGRDQKLPKH HQTNSGAAAI QQNTSGSRRS ESSFWMPLIN NLLKKSLVPV VIFCFSKNRC DRSADSMFGA DLTSNSDKSE
0701: IRVFCDKAFS RLKGSDRNLP QVVGIQSLLR RGIGVHHAGL LPIVKEVVEM LFCRGVIKVL FSTETFAMGV NAPARTVVFD TLRKFDGKEH RRLLPGEYIQ
0801: MAGRAGRRGL DTIGTVIMMC RDEIPEESDL KNLLVGKPTR LESQFRLTYT MILHLLRVEE LKVEDMLKRS FAEFHAQKDL PEKEKLLLQM LRQPTKTIEC
0901: IKGEPSIEEY YDMFLEAEEH REFVTEAIMQ LHTTQQFLAP GRLVVVKSKS DDDHLLGVIV KNPSVALKQY VVLVLTCDST SSALSPNLSS QNEKGPGDSQ
1001: GYLVILPKGK RGMDDDFFSS SRTRKSSGVI NVKLPYTGDA SGMGFEVRAV ENKEIISICT SKIKIDQAGL LEDISKTAYS KTVQMLIKEQ PDGKYPPALD
1101: AIKDLKMKDM DQVKRYHAHN NLLEEMSKNK CHGCIKLKEH KILMKDQKVH KDRLDQLKYQ MSDEALQQMP QFQGRIDVLK EIHYIDSDLV VQLKGRVACE
1201: MNSGEELIST ECLFENQLDE LEPEEAVAIM SAFVFQQRNA SEPSLTPKLA DAKKRLYDTA ISLGQLQKRH EVPVDPEEYA RDNLKFGLVE VVYEWAKGTP
1301: FADICELTDV SEGLIVRTIV RLDETCREFR NAASIMGNSA LYKKMEIASN AIKRDIVFAA SLYVTGI
0001: MNKVEAGNEL GFRVGFSGHG GHLRVEPFYT AERDDALNSL PDFVSPPAFA KETKESIKKH IEEKYLIPRL EPDQFSAEKA ENQWDFDWFS RVKMPLQPSL
0101: PRSVVVPTWE LPFRRQKEDT ENGAWEPKSV EVDLSEQMYG DQDSGFFPRM VGPPKDFLRG SVNNRPFRPG GLEDSQSSER VLPEGVSSGQ WVQELLNGGP
0201: AQTVPPSFKQ SLDLGDLMPY PQTWSVYEDH SSHGNASDEN SSKLSIQFDD LFKKAWEEDT FSELEGDDHT AGSESPKAEA EPDAKASISN EVSKGLETDV
0301: TVLDEILSSA KTAIMSEEAV TGSSDKQLRK EGWATKGDSQ DIADRFYELV PDMAIEFPFE LDNFQKEAIC CLEKGESVFV AAHTSAGKTV VAEYAFALAT
0401: KHCTRAVYTA PIKTISNQKY RDFCGKFDVG LLTGDVSIRP EASCLIMTTE ILRSMLYRGA DIIRDIEWVI FDEVHYVNDV ERGVVWEEVI IMLPRHINFV
0501: LLSATVPNTF EFADWIGRTK QKEIRVTGTT KRPVPLEHCL FYSGELYKVC ENEVFLSKGI KDAKDSQKKK NSNAVSVAPK QQMGSSAHQD GSKSQKHEAH
0601: SRGKQNKHSS VKDVGKSSYS GNSQNNGAFR RSAASNWLLL INKLSKMSLL PVVVFCFSKN YCDRCADALT GTDLTSSSEK SEIRVFCDKA FSRLKGSDRN
0701: LPQVLRLQSL LHRGIGVHHA GLLPIVKEVV EMLFCRGVIK VLFSTETFAM GVNAPARTVV FDALRKFDGK EFRQLLPGEY TQMAGRAGRR GLDKTGTVVV
0801: MCRDEVPDES DLRRVIVGSA TRLESQFRLT YIMILHLLRV EELKVEDMLK RSFAEFHAQK KLPEKQQLLM IKRSLPTKHI ECIKGEPAIE DYYDMYMEAN
0901: EYNNKMSEAV MQSPYAQSFL VQGRVVVMKS GMGIDNLLGI VLKGPSNTNR QYVVLVIKSE IPPPEKNMVS IGKKSSDPSQ GYFIAPKSKR GFEEEFYTKP
1001: SSRKGPVVIK IELPYHGVAA GVGYEVKGFD NKEFLCICDS KIKIDQVRLL EDGNKAAFSQ TVQQLLDLKS DGNKFPPALD PVKDLKLKDA ELVETYYKWT
1101: NLLQKMSMNK CHGCVKLEEH MKLAREIKKH KTDLKDLEFQ MSDEALLQMP AFQGRIDVLK NIGCIDDDLV VQIKGRVACE MNSGEELICT VCLFENQFEE
1201: LEPEEAVAIM SAFVFQQKNT SAPTLTPKLA KAKQRLYDTA IRLGELQAQY NLQIDPEEYA QENLKFGLVE VVYEWAKGTP FAEICELTDV PEGLIVRTIV
1301: RLDETCREFK NAAAIMGNSA LHKKMDAASN AIKRDIVFAA SLYVTGV
0101: PRSVVVPTWE LPFRRQKEDT ENGAWEPKSV EVDLSEQMYG DQDSGFFPRM VGPPKDFLRG SVNNRPFRPG GLEDSQSSER VLPEGVSSGQ WVQELLNGGP
0201: AQTVPPSFKQ SLDLGDLMPY PQTWSVYEDH SSHGNASDEN SSKLSIQFDD LFKKAWEEDT FSELEGDDHT AGSESPKAEA EPDAKASISN EVSKGLETDV
0301: TVLDEILSSA KTAIMSEEAV TGSSDKQLRK EGWATKGDSQ DIADRFYELV PDMAIEFPFE LDNFQKEAIC CLEKGESVFV AAHTSAGKTV VAEYAFALAT
0401: KHCTRAVYTA PIKTISNQKY RDFCGKFDVG LLTGDVSIRP EASCLIMTTE ILRSMLYRGA DIIRDIEWVI FDEVHYVNDV ERGVVWEEVI IMLPRHINFV
0501: LLSATVPNTF EFADWIGRTK QKEIRVTGTT KRPVPLEHCL FYSGELYKVC ENEVFLSKGI KDAKDSQKKK NSNAVSVAPK QQMGSSAHQD GSKSQKHEAH
0601: SRGKQNKHSS VKDVGKSSYS GNSQNNGAFR RSAASNWLLL INKLSKMSLL PVVVFCFSKN YCDRCADALT GTDLTSSSEK SEIRVFCDKA FSRLKGSDRN
0701: LPQVLRLQSL LHRGIGVHHA GLLPIVKEVV EMLFCRGVIK VLFSTETFAM GVNAPARTVV FDALRKFDGK EFRQLLPGEY TQMAGRAGRR GLDKTGTVVV
0801: MCRDEVPDES DLRRVIVGSA TRLESQFRLT YIMILHLLRV EELKVEDMLK RSFAEFHAQK KLPEKQQLLM IKRSLPTKHI ECIKGEPAIE DYYDMYMEAN
0901: EYNNKMSEAV MQSPYAQSFL VQGRVVVMKS GMGIDNLLGI VLKGPSNTNR QYVVLVIKSE IPPPEKNMVS IGKKSSDPSQ GYFIAPKSKR GFEEEFYTKP
1001: SSRKGPVVIK IELPYHGVAA GVGYEVKGFD NKEFLCICDS KIKIDQVRLL EDGNKAAFSQ TVQQLLDLKS DGNKFPPALD PVKDLKLKDA ELVETYYKWT
1101: NLLQKMSMNK CHGCVKLEEH MKLAREIKKH KTDLKDLEFQ MSDEALLQMP AFQGRIDVLK NIGCIDDDLV VQIKGRVACE MNSGEELICT VCLFENQFEE
1201: LEPEEAVAIM SAFVFQQKNT SAPTLTPKLA KAKQRLYDTA IRLGELQAQY NLQIDPEEYA QENLKFGLVE VVYEWAKGTP FAEICELTDV PEGLIVRTIV
1301: RLDETCREFK NAAAIMGNSA LHKKMDAASN AIKRDIVFAA SLYVTGV
Arabidopsis Description
SKI2DExH-box ATP-dependent RNA helicase DExH11 [Source:UniProtKB/Swiss-Prot;Acc:F4JAA5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.