Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018181.1-P | Field mustard | nucleus | 99.58 | 88.74 |
| CDX86107 | Canola | nucleus | 97.91 | 86.99 |
| AT3G46960.1 | Thale cress | nucleus | 91.3 | 80.99 |
| PGSC0003DMT400053716 | Potato | cytosol, mitochondrion | 5.02 | 80.0 |
| VIT_06s0004g05970.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 59.67 | 65.23 |
| KRG98348 | Soybean | cytosol | 71.38 | 63.56 |
| Solyc06g005990.2.1 | Tomato | cytosol | 70.8 | 62.16 |
| GSMUA_Achr9P03710_001 | Banana | cytosol | 67.2 | 60.88 |
| KXG29518 | Sorghum | cytosol | 65.19 | 56.82 |
| TraesCS6A01G133400.3 | Wheat | cytosol | 64.52 | 56.4 |
| HORVU6Hr1G025670.1 | Barley | nucleus | 64.35 | 56.25 |
| TraesCS6B01G161800.5 | Wheat | nucleus | 64.27 | 56.14 |
| Zm00001d015314_P003 | Maize | cytosol | 65.44 | 55.38 |
| CDY45149 | Canola | nucleus | 10.46 | 33.07 |
| CDY30903 | Canola | nucleus | 26.53 | 32.12 |
| CDY65064 | Canola | nucleus | 26.36 | 31.79 |
| CDY44724 | Canola | cytosol | 26.11 | 31.58 |
| CDY41593 | Canola | cytosol | 26.11 | 31.48 |
| CDY45148 | Canola | endoplasmic reticulum | 16.07 | 30.87 |
| CDY33604 | Canola | cytosol | 6.03 | 24.49 |
| CDY38782 | Canola | plastid | 18.33 | 18.8 |
| CDY11624 | Canola | plastid | 17.82 | 18.49 |
| CDY48648 | Canola | nucleus | 11.3 | 13.12 |
| CDY56796 | Canola | cytosol | 9.87 | 12.9 |
| CDY49767 | Canola | nucleus | 11.38 | 12.02 |
| CDY03992 | Canola | nucleus | 11.38 | 11.98 |
| CDY22275 | Canola | cytosol, nucleus, plasma membrane | 9.62 | 10.84 |
| CDY47017 | Canola | cytosol | 10.71 | 10.62 |
| CDY22556 | Canola | cytosol | 17.07 | 9.7 |
| CDX76355 | Canola | cytosol | 10.04 | 9.25 |
| CDY51661 | Canola | nucleus | 11.63 | 8.93 |
| CDY04587 | Canola | plastid | 2.59 | 8.47 |
| CDY42855 | Canola | nucleus, plastid | 14.64 | 8.25 |
| CDX75273 | Canola | nucleus | 12.72 | 7.56 |
| CDX68881 | Canola | nucleus | 13.05 | 7.51 |
| CDY23339 | Canola | nucleus | 12.55 | 7.46 |
| CDY31853 | Canola | nucleus | 7.45 | 7.41 |
| CDY51662 | Canola | nucleus | 4.6 | 7.16 |
| CDY01343 | Canola | cytosol | 1.84 | 6.77 |
| CDY48646 | Canola | cytosol | 1.84 | 6.77 |
| CDY31854 | Canola | cytosol | 1.84 | 6.77 |
| CDY28773 | Canola | cytosol | 1.84 | 6.77 |
| CDY01342 | Canola | cytosol | 6.19 | 6.68 |
| CDX76356 | Canola | nucleus | 2.18 | 6.57 |
| CDY47018 | Canola | cytosol | 3.1 | 5.19 |
| CDY52687 | Canola | cytosol, mitochondrion | 3.35 | 4.66 |
| CDX75272 | Canola | nucleus | 0.0 | 0.0 |
| CDX68879 | Canola | cytosol, mitochondrion, nucleus | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.3380.30 | Gene3D:1.20.1500.20 | MapMan:16.8.1.2.6.1 | Gene3D:2.40.30.300 | Gene3D:3.40.50.300 | GO:A0A078EDI0 |
| EnsemblPlants:CDX99082 | ProteinID:CDX99082 | ProteinID:CDX99082.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003724 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0006139 | GO:GO:0006401 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00107223001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF08148 | PFAM:PF13234 | PIRSF:PIRSF005198 |
| PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR12131 | PANTHER:PTHR12131:SF8 | SMART:SM00487 | SMART:SM00490 |
| SMART:SM01142 | SUPFAM:SSF52540 | InterPro:Ski2-like | InterPro:Ski2_C | UniParc:UPI0004EEBF02 | InterPro:rRNA_proc-arch_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaA06g17730D
Coordinates
chrLK031908:+:242295..248593
Molecular Weight (calculated)
133970.0 Da
IEP (calculated)
5.328
GRAVY (calculated)
-0.297
Length
1195 amino acids
Sequence
(BLAST)
(BLAST)
0001: MNKVEAANEL AFRVGISGHG GHLRVEPLYT EESDGAVNSL PDFVSPPAFA KESKESIKEH IEEKYLLPRL EPQQFSAENA QNQWDFDWFA RVKVPLQPSL
0101: PRSVLVPTWE LPFRRQKTGR WEPKSVEVDL SQQMYGDQDS GFFPRMVGPP KDFLRGSANN RPFRPGGLED SQSSERILPD GVCDGQWVQE LLNGGPPLNV
0201: PPSFKQSLDL GHLMPYPQTW KVYEDQSSHG NASDDKPSKL SIQFDDLFKT VLEEDTVFEL DGDDRSAGSE SPKAETEPEP EAIKGGEPSK GTDTDVTVLD
0301: EILSSAKTAI TSDEAIAGNS GKQLRKEGWA TKGDSQDIAD RFHELVPDMA MEFPFELDIF QKEAICCLEK GESVFVAAHT SAGKTVVAEY AFALATKHCT
0401: RAVYTAPIKT ISNQKYRDFC GKFDVGLLTG DVSIRPEASC LIMTTEILRS MLYRGADIIR DIEWVVFDEV HYVNDVERGV VWEEVIIMLP RHINFVLLSA
0501: TVVVFCFSKN YCDRCADALT GTDLTTSSEK SEIRVFCDKA FSRLKGSDRN LPQVLRVQSL LHRGIGVHHA GLLPIVKEVV EMLFCRGVIK VLFSTETFAM
0601: GVNAPARTVV FDALRKFDGK EFRSLLPGEY TQMAGRAGRR GLDKTGTVVV MCRDEVPDES DLRRIIVGSA TRLESQFRLT YIMILHLLRV EELKVEDMLK
0701: RSFAEFHAQK KLPEKQQLLM LKRSLPVKTI ECIKGEPAIE DYYEMYMEAN ECNSKMSEAV MQSPNTQQHL VPGRVVVMKS ETGIDNLLGV VLKGLSNRQY
0801: VVLVIKSEIP PPEKNMVSIG KKSSDPSQGF FIAPKSKRGF EDDYYSTSSS RKGTGVIKIE LPYHGVAAGV GYEVRAFDNK EFLCICVSKI KIDQVRLLED
0901: GNKAAFSQTV QQLLDLKSDG NKFPPALDPV KDLKLKDAEL VETYYKWTSL LQKMSMNKCH GCVKLDEHMK LAREIRKHKK DLKDLEFQMS DEALLQMPAF
1001: QGRIDVLKKI GCIDDDLVVQ IKGRVACEMN SGEELICTVC LFENQFEELE PEEAVAIMSA FVFQQKNTSA PSLTPKLAKA KQRFYDTAIK LGELQAHYNL
1101: QIDPEEYAQE NLKFGLVEVV YEWAKGTPFA EICELTDVPE GLIVRTIVRL DETCREFKNA AAIMGNSALH KKMDSASNAI KRDIVFAASL YVTGV
0101: PRSVLVPTWE LPFRRQKTGR WEPKSVEVDL SQQMYGDQDS GFFPRMVGPP KDFLRGSANN RPFRPGGLED SQSSERILPD GVCDGQWVQE LLNGGPPLNV
0201: PPSFKQSLDL GHLMPYPQTW KVYEDQSSHG NASDDKPSKL SIQFDDLFKT VLEEDTVFEL DGDDRSAGSE SPKAETEPEP EAIKGGEPSK GTDTDVTVLD
0301: EILSSAKTAI TSDEAIAGNS GKQLRKEGWA TKGDSQDIAD RFHELVPDMA MEFPFELDIF QKEAICCLEK GESVFVAAHT SAGKTVVAEY AFALATKHCT
0401: RAVYTAPIKT ISNQKYRDFC GKFDVGLLTG DVSIRPEASC LIMTTEILRS MLYRGADIIR DIEWVVFDEV HYVNDVERGV VWEEVIIMLP RHINFVLLSA
0501: TVVVFCFSKN YCDRCADALT GTDLTTSSEK SEIRVFCDKA FSRLKGSDRN LPQVLRVQSL LHRGIGVHHA GLLPIVKEVV EMLFCRGVIK VLFSTETFAM
0601: GVNAPARTVV FDALRKFDGK EFRSLLPGEY TQMAGRAGRR GLDKTGTVVV MCRDEVPDES DLRRIIVGSA TRLESQFRLT YIMILHLLRV EELKVEDMLK
0701: RSFAEFHAQK KLPEKQQLLM LKRSLPVKTI ECIKGEPAIE DYYEMYMEAN ECNSKMSEAV MQSPNTQQHL VPGRVVVMKS ETGIDNLLGV VLKGLSNRQY
0801: VVLVIKSEIP PPEKNMVSIG KKSSDPSQGF FIAPKSKRGF EDDYYSTSSS RKGTGVIKIE LPYHGVAAGV GYEVRAFDNK EFLCICVSKI KIDQVRLLED
0901: GNKAAFSQTV QQLLDLKSDG NKFPPALDPV KDLKLKDAEL VETYYKWTSL LQKMSMNKCH GCVKLDEHMK LAREIRKHKK DLKDLEFQMS DEALLQMPAF
1001: QGRIDVLKKI GCIDDDLVVQ IKGRVACEMN SGEELICTVC LFENQFEELE PEEAVAIMSA FVFQQKNTSA PSLTPKLAKA KQRFYDTAIK LGELQAHYNL
1101: QIDPEEYAQE NLKFGLVEVV YEWAKGTPFA EICELTDVPE GLIVRTIVRL DETCREFKNA AAIMGNSALH KKMDSASNAI KRDIVFAASL YVTGV
0001: MGAKISGEQM YGDQDSGFFP RMVGPPKDFL RGSVNNRPFR PGGLEDSQSS ERVLPEGVSS GQWVQELLNG GPAQTVPPSF KQSLDLGDLM PYPQTWSVYE
0101: DHSSHGNASD ENSSKLSIQF DDLFKKAWEE DTFSELEGDD HTAGSESPKA EAEPDAKASI SNEVSKGLET DVTVLDEILS SAKTAIMSEE AVTGSSDKQL
0201: RKEGWATKGD SQDIADRFYE LVPDMAIEFP FELDNFQKEA ICCLEKGESV FVAAHTSAGK TVVAEYAFAL ATKHCTRAVY TAPIKTISNQ KYRDFCGKFD
0301: VGLLTGDVSI RPEASCLIMT TEILRSMLYR GADIIRDIEW VIFDEVHYVN DVERGVVWEE VIIMLPRHIN FVLLSATVPN TFEFADWIGR TKQKEIRVTG
0401: TTKRPVPLEH CLFYSGELYK VCENEVFLSK GIKDAKDSQK KKNSNAVSVA PKQQMGSSAH QDGSKSQKHE AHSRGKQNKH SSVKDVGKSS YSGNSQNNGA
0501: FRRSAASNWL LLINKLSKMS LLPVVVFCFS KNYCDRCADA LTGTDLTSSS EKSEIRVFCD KAFSRLKGSD RNLPQVLRLQ SLLHRGIGVH HAGLLPIVKE
0601: VVEMLFCRGV IKVLFSTETF AMGVNAPART VVFDALRKFD GKEFRQLLPG EYTQMAGRAG RRGLDKTGTV VVMCRDEVPD ESDLRRVIVG SATRLESQFR
0701: LTYIMILHLL RVEELKVEDM LKRSFAEFHA QKKLPEKQQL LMIKRSLPTK HIECIKGEPA IEDYYDMYME ANEYNNKMSE AVMQSPYAQS FLVQGRVVVM
0801: KSGMGIDNLL GIVLKGPSNT NRQYVVLVIK SEIPPPEKNM VSIGKKSSDP SQGYFIAPKS KRGFEEEFYT KPSSRKGPVV IKIELPYHGV AAGVGYEVKG
0901: FDNKEFLCIC DSKIKIDQVR LLEDGNKAAF SQTVQQLLDL KSDGNKFPPA LDPVKDLKLK DAELVETYYK WTNLLQKMSM NKCHGCVKLE EHMKLAREIK
1001: KHKTDLKDLE FQMSDEALLQ MPAFQGRIDV LKNIGCIDDD LVVQIKGRVA CEMNSGEELI CTVCLFENQF EELEPEEAVA IMSAFVFQQK NTSAPTLTPK
1101: LAKAKQRLYD TAIRLGELQA QYNLQIDPEE YAQENLKFGL VEVVYEWAKG TPFAEICELT DVPEGLIVRT IVRLDETCRE FKNAAAIMGN SALHKKMDAA
1201: SNAIKRDIVF AASLYVTGV
0101: DHSSHGNASD ENSSKLSIQF DDLFKKAWEE DTFSELEGDD HTAGSESPKA EAEPDAKASI SNEVSKGLET DVTVLDEILS SAKTAIMSEE AVTGSSDKQL
0201: RKEGWATKGD SQDIADRFYE LVPDMAIEFP FELDNFQKEA ICCLEKGESV FVAAHTSAGK TVVAEYAFAL ATKHCTRAVY TAPIKTISNQ KYRDFCGKFD
0301: VGLLTGDVSI RPEASCLIMT TEILRSMLYR GADIIRDIEW VIFDEVHYVN DVERGVVWEE VIIMLPRHIN FVLLSATVPN TFEFADWIGR TKQKEIRVTG
0401: TTKRPVPLEH CLFYSGELYK VCENEVFLSK GIKDAKDSQK KKNSNAVSVA PKQQMGSSAH QDGSKSQKHE AHSRGKQNKH SSVKDVGKSS YSGNSQNNGA
0501: FRRSAASNWL LLINKLSKMS LLPVVVFCFS KNYCDRCADA LTGTDLTSSS EKSEIRVFCD KAFSRLKGSD RNLPQVLRLQ SLLHRGIGVH HAGLLPIVKE
0601: VVEMLFCRGV IKVLFSTETF AMGVNAPART VVFDALRKFD GKEFRQLLPG EYTQMAGRAG RRGLDKTGTV VVMCRDEVPD ESDLRRVIVG SATRLESQFR
0701: LTYIMILHLL RVEELKVEDM LKRSFAEFHA QKKLPEKQQL LMIKRSLPTK HIECIKGEPA IEDYYDMYME ANEYNNKMSE AVMQSPYAQS FLVQGRVVVM
0801: KSGMGIDNLL GIVLKGPSNT NRQYVVLVIK SEIPPPEKNM VSIGKKSSDP SQGYFIAPKS KRGFEEEFYT KPSSRKGPVV IKIELPYHGV AAGVGYEVKG
0901: FDNKEFLCIC DSKIKIDQVR LLEDGNKAAF SQTVQQLLDL KSDGNKFPPA LDPVKDLKLK DAELVETYYK WTNLLQKMSM NKCHGCVKLE EHMKLAREIK
1001: KHKTDLKDLE FQMSDEALLQ MPAFQGRIDV LKNIGCIDDD LVVQIKGRVA CEMNSGEELI CTVCLFENQF EELEPEEAVA IMSAFVFQQK NTSAPTLTPK
1101: LAKAKQRLYD TAIRLGELQA QYNLQIDPEE YAQENLKFGL VEVVYEWAKG TPFAEICELT DVPEGLIVRT IVRLDETCRE FKNAAAIMGN SALHKKMDAA
1201: SNAIKRDIVF AASLYVTGV
Arabidopsis Description
SKI2DExH-box ATP-dependent RNA helicase DExH11 [Source:UniProtKB/Swiss-Prot;Acc:F4JAA5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.