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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX68881 Canola nucleus 94.43 91.43
CDY51661 Canola nucleus 67.71 87.47
CDY23339 Canola nucleus 81.39 81.35
CDY51662 Canola nucleus 30.05 78.65
CDY49767 Canola nucleus 10.0 17.77
CDY03992 Canola nucleus 10.0 17.71
CDY56796 Canola cytosol 7.91 17.38
CDY45149 Canola nucleus 3.18 16.93
CDY48648 Canola nucleus 7.96 15.55
CDY30903 Canola nucleus 7.51 15.3
CDY65064 Canola nucleus 7.51 15.24
CDY22275 Canola cytosol, nucleus, plasma membrane 7.91 14.99
CDY44724 Canola cytosol 7.26 14.78
CDY48646 Canola cytosol 2.39 14.77
CDY28773 Canola cytosol 2.39 14.77
CDY01343 Canola cytosol 2.39 14.77
CDY31854 Canola cytosol 2.39 14.77
CDY41593 Canola cytosol 7.21 14.63
CDY45148 Canola endoplasmic reticulum 4.38 14.15
CDY38782 Canola plastid 8.06 13.91
CDY11624 Canola plastid 7.81 13.63
CDY22556 Canola cytosol 14.03 13.41
CDX76355 Canola cytosol 8.36 12.95
CDY47017 Canola cytosol 7.71 12.86
CDX99082 Canola cytosol 7.56 12.72
CDX86107 Canola nucleus 8.46 12.64
CDY42855 Canola nucleus, plastid 11.54 10.94
CDY33604 Canola cytosol 1.49 10.2
CDY47018 Canola cytosol 3.33 9.4
CDY04587 Canola plastid 1.59 8.74
CDY52687 Canola cytosol, mitochondrion 3.53 8.28
CDY31853 Canola nucleus 4.78 7.99
CDY01342 Canola cytosol 4.08 7.4
CDX76356 Canola nucleus 1.24 6.31
CDX75272 Canola nucleus 0.0 0.0
CDX68879 Canola cytosol, mitochondrion, nucleus 0.0 0.0
Protein Annotations
KEGG:00230+2.7.7.7KEGG:00240+2.7.7.7Gene3D:1.10.150.20Gene3D:1.10.3380.20Gene3D:1.20.1060.10MapMan:14.2.2
Gene3D:3.30.420.10Gene3D:3.30.70.370Gene3D:3.40.50.300GO:A0A078CJL8EnsemblPlants:CDX75273ProteinID:CDX75273
ProteinID:CDX75273.1ncoils:CoilInterPro:DEAD/DEAH_box_helicase_domInterPro:DNA-dir_DNA_pol_A_palm_domInterPro:DNA_polymerase_AGO:GO:0000166
GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003824GO:GO:0003887GO:GO:0005488
GO:GO:0005524GO:GO:0006139GO:GO:0006259GO:GO:0006260GO:GO:0006261GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0016740EnsemblPlantsGene:GSBRNA2T00121141001InterPro:Helicase_ATP-bd
InterPro:Helicase_CInterPro:IPR001650InterPro:IPR014001InterPro:IPR036397InterPro:P-loop_NTPasePFAM:PF00270
PFAM:PF00271PFAM:PF00476PRINTS:PR00868PFscan:PS51192PFscan:PS51194PANTHER:PTHR10133
PANTHER:PTHR10133:SF27InterPro:RNaseH_sfSMART:SM00482SMART:SM00487SMART:SM00490SUPFAM:SSF158702
SUPFAM:SSF52540SUPFAM:SSF56672UniParc:UPI0004EEDE45SEG:seg::
Description
BnaA01g04290D
Coordinates
chrLK031804:+:429446..440179
Molecular Weight (calculated)
221355.0 Da
IEP (calculated)
7.688
GRAVY (calculated)
-0.334
Length
2010 amino acids
Sequence
(BLAST)
0001: MDSDSSRSRI DQFYVSKKRK HLSPNLKSGR NEKNVKVTGE RSPGDKGTLD SYLKPSLDDK SISNSVLQAK QKAFAKKLDL EVSRPPYAGE SIHPPLPKPV
0101: IAESSRGDEV CLNRGGSRVL HKEGVATAEN HAPDVSLCAN QKDNSELRDF ATGFLSLYCS EVRSVVGSPT RQKANELKRC GSSSLLAQDM QISHKRRCDS
0201: EYIPSLDEPA YPLGCKHDSI ARIVGKRDTS VPDPKKKVPS NESVEIPMGL RKCSKVPESS ALLTECRTPG SAVKSCHVGT PKSGSGSSIF SPGDSFWNEA
0301: IQFADGLSVP TQNSGSVEAK DRDNEDNCSD NLKRSLDLDE SRVKDKDATG YSKVAEKHGR DFNKEVSPLP VKNLELLFQD RKANGSTREQ CASFDQNNIT
0401: RGSCGISQSA LVDNRGCGSL DVANNGPANK NLVGRMYPEP EENKVALCEG NHSARSVPAI SNMRKSADSS ESEESQTPSS SLHNKDGLSL STWLPSEVCS
0501: VYNKKGISKL YPWQPVTSIC HPKLVGSCCV ECLQVDGVLQ KRNLVYCAST SAGKSFVAEV LMLRRVITTG KMALLVLPYV SICVEKAEHL EVLLEPLGKH
0601: VRSYYGNQGG GTLPKGTSVA VCTIEKANSL INRLLEEGRL SELGIIVIDE LHMVGDQHRG YLLELMLTKL RYAAGEGSSE SSSGESSGSS SGKNDPAHGL
0701: QIVGMSATMP NVGAVADWLQ AALYQTEFRP VPLEEYIKVG DIIYNKKMEV VRTLPKAANM GGKDPDHIIE LCNEIVQEGN SVLIFCSSRK GCESTAKHIA
0801: KLIKKVLIDV DGENSEFMDI TSAIDALRRS PSGVDPVLEE TLPSGVAYHH AGLTVEEREI VETCYRKGLV RVLTATSTLA AGVNLPARRV IFRQPMIGRD
0901: FLDGTRYKQM SGRAGRTGID TKGESVLICK PGELKRIMTL LNESCPPLES CLSEDKNGMT HAILEVVAGG IVQTAKDIHR YVRCTLLNST KPFQDVVKSA
1001: QDSLRWLCHR KFLEWNEETK LYTTTPLGRG SFGSSLCPEE SLIVLDDLLR SREGLVMASD LHLVYLVTPI NVGVEPNWEL YYERFMELSP LEQSVGNRVG
1101: VVEPFLMRMA HGATVRTLNK PQDVKKNMRG EYGNRHGSAS SKMLSDEQML RVCKRFFVAL ILSKLVQEAS VSEVCEAFKV ARGMVQALQE NAGRFCSMVS
1201: VFCERLGWHD LEGLVAKLQN RVSFGVRAEI VELTSIPYIK GSRARALYKA GLRTSQAIAE ASIPEIVKAL FESSAWATEG NSIFLRQRIQ LGLAKKIKNG
1301: ARKIVLEKAE EARAAAFSAF KSLGLDVHDL SNPLPLAPAR SPNEQPMEVS GAALGVSLEV NLSDPLPDFQ PIGTTVGTDG LNAVSILSSD DRDVRNEDNA
1401: EQHLARNADI PLSNKDNAGE KGPITAGNIR GGFDSFLELW DSAGEFFFDI HFNKLQGLNS RISYEIHGIA ICWDSSPVYY VNLNKDLLSL EYEERHSNPN
1501: IDKEVKKRLS PEAAEAANRS GRWRNQIRRV AHNGCCRRVA QTRALCLALW KILVSEELLE ALTTTEMPLV NVLADMELWG IGVDIEGCLR ARNILRDKLR
1601: SLEKKAFELA GMTFSLHNPA DISNVLFKQL KLPIPETQNK GKLHPSTDKQ CLDLLRNEHP IVPIIKEHRT LAKLLNCTLG SICSLAKLRL STQRYTLHGH
1701: WLQTSTATGR LSIEEPNLQS VEHEVEFILD KNGKEVNSDA VSYKVNARDF FVPTQENWLL LTADYSQIEL RLMAHFSRDP SLIAQLSQPE GDVFTMIAAK
1801: WTGKNEDSVS PHDRDQTKRL IYGILYGMGA NRLAEQLECS SDEAKEKIRS FKSSFPAVTS WLNETVSFCQ EKGYIQTLKG RRRFLSKIKF GNAKEKAKAQ
1901: RQAVNSVCQG SAADIIKIAM INIYSAISED SDTAASSSST ETRFHALKGR CRILLQVHDE LVLEVDPSYA KEAAMLLQSS MENAVSLLVP LHVKLKVGKT
2001: WGSLEPLQAD
Best Arabidopsis Sequence Match ( AT4G32700.2 )
(BLAST)
0001: MDSDSSKSRI DQFYVSKKRK HQSPNLKSGR NEKNVKVTGE RSPGDKGTLD SYLKASLDDK STTNSGLQAR QEAFTRKLDL EVSASSVGQN IHPCLPKPVS
0101: FATFKECLGQ NGSQDLHKEG VAAETHATDG LLCANQKDNS ELRDFATSFL SLYCSGVQSV VGSPPHQKEN ELKRRSSSSS LAQDIQISHK RRCESENIPS
0201: LDDLTNPLGS KPESLARNGN NRDKPVSDPT KKMPSNESVE IPMGLRKCSK APESSAHLTE FHTPGSAIKS CPVGTPKSGC GSSMFSPGEA FWNEAIQVAD
0301: GLTIPIENFG SVEAKVRDQH VTILSCSKKT DKCTEKLERS LDLDEIRVKD KDAIGFSKVV EKHGRDFNKE VYQLPVKNLE LLFQDKNING GIQERCASFD
0401: QNNITLGSSR ISESAFVGNK GCENLDIANN AQADKGLIGK MYPEPEGKKV LLCEENRGVR SVSMISNMRK PVGSSESEES HTPSSSHRNY DGLSLSTWLP
0501: SEVCSVYNKK GISKLYPWQV ECLQVDGVLQ KRNLVYCAST SAGKSFVAEV LMLRRVIRTG KMALLVLPYV SICAEKAEHL EVLLEPLGKH VRSYYGNQGG
0601: GTLPKDTSVA VCTIEKANSL INRLLEEGRL SELGIIVIDE LHMVGDQHRG YLLELMLTKL RYAAGEGSSE SSSGESSGTS SGKADPAHGL QIVGMSATMP
0701: NVGAVADWLQ AALYQTEFRP VPLEEYIKVG STIYNKKMEV VRTIPKAADM GGKDPDHIVE LCNEVVQEGN SVLIFCSSRK GCESTARHIS KLIKNVPVNV
0801: DGENSEFMDI RSAIDALRRS PSGVDPVLEE TLPSGVAYHH AGLTVEEREI VETCYRKGLV RVLTATSTLA AGVNLPARRV IFRQPMIGRD FIDGTRYKQM
0901: SGRAGRTGID TKGDSVLICK PGELKRIMAL LNETCPPLQS CLSEDKNGMT HAILEVVAGG IVQTAKDIHR YVRCTLLNST KPFQDVVKSA QDSLRWLCHR
1001: KFLEWNEETK LYTTTPLGRG SFGSSLCPEE SLIVLDDLLR AREGLVMASD LHLVYLVTPI NVGVEPNWEL YYERFMELSP LEQSVGNRVG VVEPFLMRMA
1101: HGATVRTLNR PQDVKKNLRG EYDSRHGSTS MKMLSDEQML RVCKRFFVAL ILSKLVQEAS VTEVCEAFKV ARGMVQALQE NAGRFSSMVS VFCERLGWHD
1201: LEGLVAKFQN RVSFGVRAEI VELTSIPYIK GSRARALYKA GLRTSQAIAE ASIPEIVKAL FESSAWAAEG TGQRRIHLGL AKKIKNGARK IVLEKAEEAR
1301: AAAFSAFKSL GLDVNELSKP LPLAPASSLN GQETTERDIS RGSVGPDGLQ QSIEGHMECE NFDMDNHREK PSEVLGDATL GVSSEINLTS RLPNFRPIGT
1401: AVGTNGPSAV SILSSDTFPI PVYDNREIKP KDNVEQHLTR NDHIPLSSNK DGTGEKGPVT AGNISGGFDS FLELWGSAGE FFFDLHYNKL QDLNSRISYE
1501: IHGIAICWNC SPVYYVNLNK DLPNLECVEK QKLIEDAVIG KSEVLASHNM LDVIKSRWNK ISKIMGNVNT RKFTWNLKVQ IQVLKSPAIS IQRCTRLNLP
1601: EGIRDELVDG SWLMMPPLHT SHTIDMSIVI WILWPDEERH SNPNIDKEVK KRLSPEAAEA ANRSGRWRNQ IRRVAHNGCC RRVAQTRALC SALWKILVSE
1701: ELLQALTTIE MPLVNVLADM ELWGIGIDIE GCLRARNILR DKLRSLEKKA FELAGMTFSL HNPADIANVL FGQLKLPIPE NQSKGKLHPS TDKHCLDLLR
1801: NEHPVVPIIK EHRTLAKLLN CTLGSICSLA KLRLSTQRYT LHGRWLQTST ATGRLSIEEP NLQSVEHEVE FKLDKNGRDV SSDADRYKIN ARDFFVPTQE
1901: NWLLLTADYS QIELRLMAHF SRDSSLISKL SQPEGDVFTM IAAKWTGKAE DSVSPHDRDQ TKRLIYGILY GMGANRLAEQ LECTSDEAKE KIRSFKSSFP
2001: AVTSWLNETI SFCQEKGYIQ TLKGRRRFLS KIKFGNAKEK SKAQRQAVNS MCQGSAADII KIAMINIYSA IAEDVDTAAS SSSSETRFHM LKGRCRILLQ
2101: VHDELVLEVD PSYVKLAAML LQTSMENAVS LLVPLHVKLK VGKTWGSLEP FQTD
Arabidopsis Description
TEBHelicase and polymerase-containing protein TEBICHI [Source:UniProtKB/Swiss-Prot;Acc:Q588V7]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.