Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX99082 | Canola | cytosol | 86.99 | 97.91 |
| AT3G46960.1 | Thale cress | nucleus | 91.23 | 91.09 |
| PGSC0003DMT400053716 | Potato | cytosol, mitochondrion | 4.46 | 80.0 |
| VIT_06s0004g05970.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 60.07 | 73.92 |
| KRG98348 | Soybean | cytosol | 69.52 | 69.67 |
| Solyc06g005990.2.1 | Tomato | cytosol | 69.52 | 68.7 |
| GSMUA_Achr9P03710_001 | Banana | cytosol | 65.06 | 66.34 |
| KXG29518 | Sorghum | cytosol | 63.12 | 61.93 |
| TraesCS6A01G133400.3 | Wheat | cytosol | 62.45 | 61.45 |
| HORVU6Hr1G025670.1 | Barley | nucleus | 62.3 | 61.3 |
| TraesCS6B01G161800.5 | Wheat | nucleus | 62.23 | 61.18 |
| Zm00001d015314_P003 | Maize | cytosol | 63.12 | 60.13 |
| CDY45149 | Canola | nucleus | 11.23 | 39.95 |
| CDY30903 | Canola | nucleus | 25.58 | 34.85 |
| CDY44724 | Canola | cytosol | 25.35 | 34.51 |
| CDY65064 | Canola | nucleus | 25.43 | 34.51 |
| CDY41593 | Canola | cytosol | 25.2 | 34.21 |
| CDY45148 | Canola | endoplasmic reticulum | 14.42 | 31.19 |
| CDY33604 | Canola | cytosol | 5.43 | 24.83 |
| CDY38782 | Canola | plastid | 18.14 | 20.94 |
| CDY11624 | Canola | plastid | 17.7 | 20.66 |
| CDY56796 | Canola | cytosol | 9.81 | 14.43 |
| CDY48648 | Canola | nucleus | 10.41 | 13.61 |
| CDY49767 | Canola | nucleus | 10.93 | 13.0 |
| CDY03992 | Canola | nucleus | 10.93 | 12.95 |
| CDY22275 | Canola | cytosol, nucleus, plasma membrane | 9.59 | 12.16 |
| CDY47017 | Canola | cytosol | 10.26 | 11.45 |
| CDY22556 | Canola | cytosol | 15.99 | 10.22 |
| CDY51661 | Canola | nucleus | 11.67 | 10.09 |
| CDY51662 | Canola | nucleus | 5.58 | 9.77 |
| CDX76355 | Canola | cytosol | 8.85 | 9.18 |
| CDY04587 | Canola | plastid | 2.45 | 9.02 |
| CDY42855 | Canola | nucleus, plastid | 13.68 | 8.68 |
| CDX75273 | Canola | nucleus | 12.64 | 8.46 |
| CDY23339 | Canola | nucleus | 12.64 | 8.45 |
| CDX68881 | Canola | nucleus | 12.94 | 8.38 |
| CDY31853 | Canola | nucleus | 6.69 | 7.49 |
| CDX76356 | Canola | nucleus | 2.08 | 7.07 |
| CDY01342 | Canola | cytosol | 5.58 | 6.77 |
| CDY48646 | Canola | cytosol | 1.56 | 6.46 |
| CDY31854 | Canola | cytosol | 1.56 | 6.46 |
| CDY28773 | Canola | cytosol | 1.56 | 6.46 |
| CDY01343 | Canola | cytosol | 1.56 | 6.46 |
| CDY47018 | Canola | cytosol | 2.75 | 5.19 |
| CDY52687 | Canola | cytosol, mitochondrion | 2.9 | 4.55 |
| CDX75272 | Canola | nucleus | 0.0 | 0.0 |
| CDX68879 | Canola | cytosol, mitochondrion, nucleus | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.3380.30 | Gene3D:1.20.1500.20 | MapMan:16.8.1.2.6.1 | Gene3D:2.40.30.300 | Gene3D:3.40.50.300 | GO:A0A078DAQ3 |
| EnsemblPlants:CDX86107 | ProteinID:CDX86107 | ProteinID:CDX86107.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003724 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0006139 | GO:GO:0006401 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00144146001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF08148 | PFAM:PF13234 | PIRSF:PIRSF005198 |
| PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR12131 | PANTHER:PTHR12131:SF8 | SMART:SM00487 | SMART:SM00490 |
| SMART:SM01142 | SUPFAM:SSF52540 | InterPro:Ski2-like | InterPro:Ski2_C | UniParc:UPI0004EDBF36 | InterPro:rRNA_proc-arch_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaC03g56220D
Coordinates
chrLK031844:-:1494794..1501778
Molecular Weight (calculated)
150748.0 Da
IEP (calculated)
6.622
GRAVY (calculated)
-0.359
Length
1345 amino acids
Sequence
(BLAST)
(BLAST)
0001: MNKVEAANEL AFRVVISGHG GHLRVEPLYT AESDGAVNSL PDFVCPPAFA KESKESIKEH IEDKYLLPRL EPQQFSAENA QNQWDFDWFA RVKVPLQPSL
0101: PRSVLVPTWE LPFRRQKNRR WEPKSVEVDL SEQMYGDQDS GFFPRMVGPP KDFLRGSANN RPFRPGGLED SQSSSERILP HGVCDGQWVQ ELLNGGPPQN
0201: VPPSFKQSLY LGGHLMPYPQ TWKVYEDQSS HGNASDDKSS TLSIQFGDLF KSVLEEDTVF ELEGDDRSEG SESPKAEAEP ELEPEASKGR ELSKGTETDV
0301: TVLDEILSSA KTAIMSDEAI AGNSGKQLRK EGWATKGDSQ DIADRFHELV PDMAMEFPFE LDIFQKEAIC CLEKGESVFV AAHTSAGKTV VAEYAFALAT
0401: KHCTRAVYTA PIKTISNQKY RDFCGKFDVG LLTGDVSIRP EASCLIMTTE ILRSMLYRGA DIIRDIEWVV FDEVHYVNDV ERGVVWEEVI IMLPRHINFV
0501: LLSATVPNTF EFADWIGRTK QKEIRVTGTT KRPVPLEHCL FYSGELYKVC ENEVFISKGI KDAKDTHKKK NSSAVSVGPK QHAGSSAHQD GNKSQKHEAH
0601: SRGKQNKHSS VKDLAKSSYG GNGQNNGAFR RSAASNWLLL INKLSKKSLL PVVVFCFSKN YCDRCADALT GTDLTTSSEK SEIRVFCDKA FSRLKGSDRN
0701: LPQVLRVQSL LHRGIGVHHA GLLPIVKEVV EMLFCRGVIK VLFSTETFAM GVNAPARTVV FDALRKFDGK EFRSLLPGEY TQMAGRAGRR GLDKTGTVVV
0801: MCRDEVPDES DLRRIIVGSA TRLESQFRLT YIMILHLLRV EELKVEDMLK RSFAEFHAQK KLPEKQQLLM LKRSLPVKTI ECIKGEPAIE DYYEMYMEAN
0901: ECNSKMSEAV MQSPNAQQHL VPGRVVVMKS ETGIDNLLGV VLKGLSNRQY VVLVIKSEIP PPEKNMVSIG KKSSDPSQGF FIAPKSKRGF EDDYYSTSSS
1001: RKGTGVIKIE LPYHGVAAGV GYEVRAFDNK EFLCICVSKI KIDQVRLLED GNKAAFSQTV QQLLDLKSDG NKFPPALDPV KDLKLKDAEL VETYYKWTSL
1101: LQKMSMNKCH GCVKLDEHMK LAREIRKHKK DLKDLEFQMS DEALLQMPAF QGRIDVLKKI GCIDDDLVVQ IKGRVACEMN SGEELICTVC LFENQFEELE
1201: PEEAVAIMSA FVFQQKNTSA PSLTPKLAKT KQRFYDTAIR LGELQAHYNL QIDPEEYAQE NLKFGLVEVV YEWAKGTPFA EICELTDVPE GLIVRTIVRL
1301: DETCREFKNA AAIMGNSALH KKMDSASNAI KRDIVFAASL YVTGV
0101: PRSVLVPTWE LPFRRQKNRR WEPKSVEVDL SEQMYGDQDS GFFPRMVGPP KDFLRGSANN RPFRPGGLED SQSSSERILP HGVCDGQWVQ ELLNGGPPQN
0201: VPPSFKQSLY LGGHLMPYPQ TWKVYEDQSS HGNASDDKSS TLSIQFGDLF KSVLEEDTVF ELEGDDRSEG SESPKAEAEP ELEPEASKGR ELSKGTETDV
0301: TVLDEILSSA KTAIMSDEAI AGNSGKQLRK EGWATKGDSQ DIADRFHELV PDMAMEFPFE LDIFQKEAIC CLEKGESVFV AAHTSAGKTV VAEYAFALAT
0401: KHCTRAVYTA PIKTISNQKY RDFCGKFDVG LLTGDVSIRP EASCLIMTTE ILRSMLYRGA DIIRDIEWVV FDEVHYVNDV ERGVVWEEVI IMLPRHINFV
0501: LLSATVPNTF EFADWIGRTK QKEIRVTGTT KRPVPLEHCL FYSGELYKVC ENEVFISKGI KDAKDTHKKK NSSAVSVGPK QHAGSSAHQD GNKSQKHEAH
0601: SRGKQNKHSS VKDLAKSSYG GNGQNNGAFR RSAASNWLLL INKLSKKSLL PVVVFCFSKN YCDRCADALT GTDLTTSSEK SEIRVFCDKA FSRLKGSDRN
0701: LPQVLRVQSL LHRGIGVHHA GLLPIVKEVV EMLFCRGVIK VLFSTETFAM GVNAPARTVV FDALRKFDGK EFRSLLPGEY TQMAGRAGRR GLDKTGTVVV
0801: MCRDEVPDES DLRRIIVGSA TRLESQFRLT YIMILHLLRV EELKVEDMLK RSFAEFHAQK KLPEKQQLLM LKRSLPVKTI ECIKGEPAIE DYYEMYMEAN
0901: ECNSKMSEAV MQSPNAQQHL VPGRVVVMKS ETGIDNLLGV VLKGLSNRQY VVLVIKSEIP PPEKNMVSIG KKSSDPSQGF FIAPKSKRGF EDDYYSTSSS
1001: RKGTGVIKIE LPYHGVAAGV GYEVRAFDNK EFLCICVSKI KIDQVRLLED GNKAAFSQTV QQLLDLKSDG NKFPPALDPV KDLKLKDAEL VETYYKWTSL
1101: LQKMSMNKCH GCVKLDEHMK LAREIRKHKK DLKDLEFQMS DEALLQMPAF QGRIDVLKKI GCIDDDLVVQ IKGRVACEMN SGEELICTVC LFENQFEELE
1201: PEEAVAIMSA FVFQQKNTSA PSLTPKLAKT KQRFYDTAIR LGELQAHYNL QIDPEEYAQE NLKFGLVEVV YEWAKGTPFA EICELTDVPE GLIVRTIVRL
1301: DETCREFKNA AAIMGNSALH KKMDSASNAI KRDIVFAASL YVTGV
0001: MNKVEAGNEL GFRVGFSGHG GHLRVEPFYT AERDDALNSL PDFVSPPAFA KETKESIKKH IEEKYLIPRL EPDQFSAEKA ENQWDFDWFS RVKMPLQPSL
0101: PRSVVVPTWE LPFRRQKEDT ENGAWEPKSV EVDLSEQMYG DQDSGFFPRM VGPPKDFLRG SVNNRPFRPG GLEDSQSSER VLPEGVSSGQ WVQELLNGGP
0201: AQTVPPSFKQ SLDLGDLMPY PQTWSVYEDH SSHGNASDEN SSKLSIQFDD LFKKAWEEDT FSELEGDDHT AGSESPKAEA EPDAKASISN EVSKGLETDV
0301: TVLDEILSSA KTAIMSEEAV TGSSDKQLRK EGWATKGDSQ DIADRFYELV PDMAIEFPFE LDNFQKEAIC CLEKGESVFV AAHTSAGKTV VAEYAFALAT
0401: KHCTRAVYTA PIKTISNQKY RDFCGKFDVG LLTGDVSIRP EASCLIMTTE ILRSMLYRGA DIIRDIEWVI FDEVHYVNDV ERGVVWEEVI IMLPRHINFV
0501: LLSATVPNTF EFADWIGRTK QKEIRVTGTT KRPVPLEHCL FYSGELYKVC ENEVFLSKGI KDAKDSQKKK NSNAVSVAPK QQMGSSAHQD GSKSQKHEAH
0601: SRGKQNKHSS VKDVGKSSYS GNSQNNGAFR RSAASNWLLL INKLSKMSLL PVVVFCFSKN YCDRCADALT GTDLTSSSEK SEIRVFCDKA FSRLKGSDRN
0701: LPQVLRLQSL LHRGIGVHHA GLLPIVKEVV EMLFCRGVIK VLFSTETFAM GVNAPARTVV FDALRKFDGK EFRQLLPGEY TQMAGRAGRR GLDKTGTVVV
0801: MCRDEVPDES DLRRVIVGSA TRLESQFRLT YIMILHLLRV EELKVEDMLK RSFAEFHAQK KLPEKQQLLM IKRSLPTKHI ECIKGEPAIE DYYDMYMEAN
0901: EYNNKMSEAV MQSPYAQSFL VQGRVVVMKS GMGIDNLLGI VLKGPSNTNR QYVVLVIKSE IPPPEKNMVS IGKKSSDPSQ GYFIAPKSKR GFEEEFYTKP
1001: SSRKGPVVIK IELPYHGVAA GVGYEVKGFD NKEFLCICDS KIKIDQVRLL EDGNKAAFSQ TVQQLLDLKS DGNKFPPALD PVKDLKLKDA ELVETYYKWT
1101: NLLQKMSMNK CHGCVKLEEH MKLAREIKKH KTDLKDLEFQ MSDEALLQMP AFQGRIDVLK NIGCIDDDLV VQIKGRVACE MNSGEELICT VCLFENQFEE
1201: LEPEEAVAIM SAFVFQQKNT SAPTLTPKLA KAKQRLYDTA IRLGELQAQY NLQIDPEEYA QENLKFGLVE VVYEWAKGTP FAEICELTDV PEGLIVRTIV
1301: RLDETCREFK NAAAIMGNSA LHKKMDAASN AIKRDIVFAA SLYVTGV
0101: PRSVVVPTWE LPFRRQKEDT ENGAWEPKSV EVDLSEQMYG DQDSGFFPRM VGPPKDFLRG SVNNRPFRPG GLEDSQSSER VLPEGVSSGQ WVQELLNGGP
0201: AQTVPPSFKQ SLDLGDLMPY PQTWSVYEDH SSHGNASDEN SSKLSIQFDD LFKKAWEEDT FSELEGDDHT AGSESPKAEA EPDAKASISN EVSKGLETDV
0301: TVLDEILSSA KTAIMSEEAV TGSSDKQLRK EGWATKGDSQ DIADRFYELV PDMAIEFPFE LDNFQKEAIC CLEKGESVFV AAHTSAGKTV VAEYAFALAT
0401: KHCTRAVYTA PIKTISNQKY RDFCGKFDVG LLTGDVSIRP EASCLIMTTE ILRSMLYRGA DIIRDIEWVI FDEVHYVNDV ERGVVWEEVI IMLPRHINFV
0501: LLSATVPNTF EFADWIGRTK QKEIRVTGTT KRPVPLEHCL FYSGELYKVC ENEVFLSKGI KDAKDSQKKK NSNAVSVAPK QQMGSSAHQD GSKSQKHEAH
0601: SRGKQNKHSS VKDVGKSSYS GNSQNNGAFR RSAASNWLLL INKLSKMSLL PVVVFCFSKN YCDRCADALT GTDLTSSSEK SEIRVFCDKA FSRLKGSDRN
0701: LPQVLRLQSL LHRGIGVHHA GLLPIVKEVV EMLFCRGVIK VLFSTETFAM GVNAPARTVV FDALRKFDGK EFRQLLPGEY TQMAGRAGRR GLDKTGTVVV
0801: MCRDEVPDES DLRRVIVGSA TRLESQFRLT YIMILHLLRV EELKVEDMLK RSFAEFHAQK KLPEKQQLLM IKRSLPTKHI ECIKGEPAIE DYYDMYMEAN
0901: EYNNKMSEAV MQSPYAQSFL VQGRVVVMKS GMGIDNLLGI VLKGPSNTNR QYVVLVIKSE IPPPEKNMVS IGKKSSDPSQ GYFIAPKSKR GFEEEFYTKP
1001: SSRKGPVVIK IELPYHGVAA GVGYEVKGFD NKEFLCICDS KIKIDQVRLL EDGNKAAFSQ TVQQLLDLKS DGNKFPPALD PVKDLKLKDA ELVETYYKWT
1101: NLLQKMSMNK CHGCVKLEEH MKLAREIKKH KTDLKDLEFQ MSDEALLQMP AFQGRIDVLK NIGCIDDDLV VQIKGRVACE MNSGEELICT VCLFENQFEE
1201: LEPEEAVAIM SAFVFQQKNT SAPTLTPKLA KAKQRLYDTA IRLGELQAQY NLQIDPEEYA QENLKFGLVE VVYEWAKGTP FAEICELTDV PEGLIVRTIV
1301: RLDETCREFK NAAAIMGNSA LHKKMDAASN AIKRDIVFAA SLYVTGV
Arabidopsis Description
SKI2DExH-box ATP-dependent RNA helicase DExH11 [Source:UniProtKB/Swiss-Prot;Acc:F4JAA5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.