Skip to main content
crop-pal logo
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY31854 Canola cytosol 12.65 81.85
CDY48646 Canola cytosol 12.65 81.85
CDY28773 Canola cytosol 12.65 81.85
CDY01343 Canola cytosol 12.55 81.23
AT2G42270.1 Thale cress cytosol 80.88 78.31
CDX76355 Canola cytosol 47.41 76.87
VIT_05s0102g00480.t01 Wine grape cytosol 71.56 72.81
CDY48648 Canola nucleus 35.24 72.01
PGSC0003DMT400078069 Potato cytosol 74.08 71.67
Solyc06g082100.2.1 Tomato nucleus 66.76 71.41
CDY31853 Canola nucleus 40.51 70.94
CDY56796 Canola cytosol 30.86 70.93
KRH13647 Soybean cytosol 73.56 70.87
KRH43818 Soybean nucleus 73.37 70.68
CDY01342 Canola cytosol 37.19 70.58
CDY52687 Canola cytosol, mitochondrion 28.58 70.05
GSMUA_Achr3P29700_001 Banana cytosol 60.1 68.7
Solyc06g071620.2.1 Tomato nucleus 64.62 67.48
EER99779 Sorghum cytosol 68.66 66.18
Zm00001d022286_P003 Maize plastid 68.62 66.07
TraesCS6A01G024900.1 Wheat nucleus 68.09 65.75
TraesCS6D01G028200.1 Wheat cytosol 68.14 65.7
TraesCS6B01G034100.1 Wheat cytosol 68.05 65.67
EES04337 Sorghum cytosol 67.71 65.53
HORVU6Hr1G004350.3 Barley cytosol, mitochondrion, nucleus 67.95 65.25
TraesCS7D01G199800.1 Wheat cytosol 46.93 63.88
TraesCS7B01G103700.1 Wheat cytosol 64.53 62.59
HORVU7Hr1G040480.2 Barley cytosol, mitochondrion 63.67 62.28
TraesCS7A01G238700.1 Wheat cytosol 62.2 61.93
Os03t0743800-00 Rice nucleus 62.91 61.71
KXG37223 Sorghum cytosol 64.67 61.71
Solyc06g065300.2.1 Tomato cytosol 18.45 58.88
CDX76356 Canola nucleus 11.03 58.59
CDY22275 Canola cytosol, nucleus, plasma membrane 29.34 58.15
CDY47018 Canola cytosol 13.41 39.55
CDY42855 Canola nucleus, plastid 37.76 37.44
CDY47017 Canola cytosol 20.68 36.1
CDY49767 Canola nucleus 11.6 21.57
CDY03992 Canola nucleus 11.6 21.5
CDY45149 Canola nucleus 3.33 18.52
CDY30903 Canola nucleus 8.18 17.43
CDY65064 Canola nucleus 8.18 17.36
CDY44724 Canola cytosol 8.08 17.21
CDY41593 Canola cytosol 8.08 17.15
CDX99082 Canola cytosol 9.7 17.07
CDY45148 Canola endoplasmic reticulum 5.04 17.04
CDY51661 Canola nucleus 12.17 16.45
CDX86107 Canola nucleus 10.22 15.99
CDY11624 Canola plastid 7.94 14.5
CDY38782 Canola plastid 7.99 14.42
CDY23339 Canola nucleus 13.69 14.32
CDY51662 Canola nucleus 5.18 14.19
CDX75273 Canola nucleus 13.41 14.03
CDX68881 Canola nucleus 13.84 14.02
CDY04587 Canola plastid 2.28 13.11
CDY33604 Canola cytosol 1.57 11.22
CDX75272 Canola nucleus 0.0 0.0
CDX68879 Canola cytosol, mitochondrion, nucleus 0.0 0.0
Protein Annotations
Gene3D:1.10.10.2530Gene3D:1.10.150.20Gene3D:1.10.3380.10MapMan:16.4.7.1.4Gene3D:2.60.40.150Gene3D:3.40.50.300
GO:A0A078GB25UniProt:A0A078GB25InterPro:AAA+_ATPaseInterPro:C2_domain_sfEnsemblPlants:CDY22556ProteinID:CDY22556
ProteinID:CDY22556.1ncoils:CoilInterPro:DEAD/DEAH_box_helicase_domGO:GO:0000166GO:GO:0003674GO:GO:0003676
GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0009506EnsemblPlantsGene:GSBRNA2T00019155001InterPro:Helicase_ATP-bd
InterPro:Helicase_CInterPro:IPR001650InterPro:IPR014001InterPro:IPR035892InterPro:Ig_E-setInterPro:P-loop_NTPase
PFAM:PF00270PFAM:PF00271PFAM:PF02889PIRSF:PIRSF039073PFscan:PS51192PFscan:PS51194
PANTHER:PTHR24075PANTHER:PTHR24075:SF5SMART:SM00382SMART:SM00487SMART:SM00490SMART:SM00973
SUPFAM:SSF158702SUPFAM:SSF46785SUPFAM:SSF52540SUPFAM:SSF81296InterPro:Sec63-domUniParc:UPI0004EEE75D
InterPro:WH_DNA-bd_sfSEG:seg::::
Description
BnaC03g23660DDExH-box ATP-dependent RNA helicase DExH13 [Source:Projected from Arabidopsis thaliana (AT2G42270) UniProtKB/Swiss-Prot;Acc:O48534]
Coordinates
chrLK032132:+:589481..595963
Molecular Weight (calculated)
240499.0 Da
IEP (calculated)
5.971
GRAVY (calculated)
-0.339
Length
2103 amino acids
Sequence
(BLAST)
0001: MANLGGGGAE EEARLKQSNS NLVLNTNELR RDTREPTGEP ETLRGKIDPK SFGDLAVKER LNHSNKKKKE REGGDDTVFD RGSKRRRFRE ESVLTDTDEG
0101: VYQPKTKETR AAYEAMLSLI QHRLGGQPLS VACGAADEVL AVLKNEALDN PEKKVRIENV FYFIPDHIFD QLVSFGKLIT DYQEGGDSVS GKAIEDEGLD
0201: YDVDVAIECE EHEEESGIDM VQEEIDEEDE EAAQVNKTRG VKRKIFKGYE QKIDPHDCQV LTEEVLKILA EGSDRDVENK LLMHLQFEKF SLVKFLLQNR
0301: HKVVWCTRLA RARDQDERNQ IEEEMMRFGP EFASIVEELH AKRATAKERE ENKEKKIKEE ARWLKEYSGA DGDKCSRDAD DGDLDNDWLK GQREMLDLES
0401: LAFDQDVLLR ENKKCELPSD SYRIRGKEFD EIHVPCVSKK IDSSEKLVKI TEMPDWAQPA FEGMQQLNRV QSKVYDTALF KADNILLCAP TGAGKTNVAV
0501: LSILRQLELQ RNSDGTYSHG NYKIVYVAPM KALVVEVVDT LSKRLKDYGV TVKELSGDQS LTQKEIEETQ VIVTTPEKWD IITRKSGDRI YTQLVRLLII
0601: DEIHLLNDSR GPVLESIVAR TLRQIETTKE HIRMVGLSAT LPNYEDVALF LRVNLKDGLF TFDRSYRPVP LSQQYIGINV KKPLRRFQLM NDICYQKVLA
0701: SAGEHQVLIF VHSRKDAAKT ARAIVDTAMA NNTLSKFLKE DSESREILEC QLGLVKSHDL KLLLPYGFAI HHAGLTRSDR QIVEDQFRLG HVQVLISTAT
0801: LAWGVNLPAH TVIIKGTQVY NPERGLWMEL SPLDVMQMIG RAGRPQYDQH GEGIIITGYS ELQYYLRLMN EQLPIESQFI SKLADQLNAE IVLGTVQNAR
0901: EACHWLGYTY LYIRMARNPT LYGLPPDAIA KDIVLAERRA DLIHSAATIL NKNNLIKYDR KSGNFHVTDL GRIASYYYIT HGTIATYNEN LKPTMTDIEL
1001: CRLFSLSEEF KYVTVRQDEK MEVAQLLDRV PIPVKETVED PSAKINVLLQ AYISKLKLEG LSLTSDMIYI TQSAGRLFRA LFEIILKRGW AQLAEKALNM
1101: SKMVGKRMWS VHTPLRQFHD IPNEVLMRLE KKDLVWERYY DLSSQELGQL IRSPKMGIPL HKLIYQIPKL YLSAYVQPIF RSVLRLELTV TADFQWDDRV
1201: HKYVEPFWII VEDNDGERIL YHEYFLLKKQ YLDEDHTLNF TVPISEPLPP QYFIRVVSEK WLGSLTVLPI SFRHLMLPEK YPPPTELLDL QPLPVTALRN
1301: PSYEALYQDI KHFNPVQTQV FPVLYGTSDN ILVAAATGSG KTICAEFAIL RNHQEQPDCT MRVVYVAPLE GIAKKQFRYW EKRFGKGLGL RVVELTGETA
1401: LDLKLIEEGQ IIITTPEKWD ALSRKWKQRK YIQHVSLFII DELHLIGGQC GPVMEVIVSR MRYISSQVGN TMRIVALSTS LANAKDLGEW IGASSRGIFN
1501: FPPNVRSVQL EIHIQGVDIV SFEARMQAMT KPTYTAIVQH AKKKPVIVFV PSRKHVRLTA VDLLACLNMD NTDSPDFMFG NLEEFEPFEI VTQLFEAGRI
1601: QVCVMTSAMC WGTPLKAHLV VVMGTQLYDA REKTLSDYPV SDLLQMMGHS SRPLLDDAGK CVIFCHAPRK EHYKKFIHEA FPVESHLQLA LHDNFNAEVV
1701: AGVLRNKQDA VDYLTWSFMY RRLLQNPNYY DLQGVSHKHL SDHLSELVES TLSDLEVSKC IEMENELNIS PSNLGRIASY YYVSYTTVKR FSSLLTSETK
1801: MKSLLEILTS ASEYDLIHVR PGEEDRVQRL INHQRFSFEN PKCTDPHVKA NALLQAYFSR QKIISENLAM DQREVVFSAT RLLQAMVDVI SSNGCLNLAL
1901: LAMEVSQMVT QGTWERDSTL LQLPHFTNDL AKRCQENNIE TVFDLVEMED GRRQELLQMS NTQLLDIARF CNRYPNIDLA YEVVDSKEVT PGKEITLQVM
2001: LERDMEMEGR THVGSVDAPR YPKTKEEGWW VVVGDTKTNQ LLAIKRIYLQ EKAKVRLAFA VPTEPGEKSY TLYLMCDSYL GCDQECSFFV DIKDSGVADH
2101: MEE
Best Arabidopsis Sequence Match ( AT2G42270.1 )
(BLAST)
0001: MTNLGGGGAE EQARLKQYGY KVNSSLVLNS DERRRDTHES SGEPESLRGR IDPKSFGDRV VRGRPHELDE RLNKSKKKKE RCDDLVSARE SKRVRLREVS
0101: VLNDTEDGVY QPKTKETRVA FEIMLGLIQQ QLGGQPLDIV CGAADEILAV LKNESVKNHE KKVEIEKLLN VITDQVFSQF VSIGKLITDY EEGGDSLSGK
0201: ASEDGGLDYD IGVALECEED DDESDLDMVQ DEKDEEDEDV VELNKTGVVQ VGVAINGEDA RQAKEDTSLN VLDIDAYWLQ RKISQEYEQK IDAQECQELA
0301: EELLKILAEG NDRDVEIKLL EHLQFEKFSL VKFLLQNRLK VVWCTRLARG RDQEERNQIE EEMLGLGSEL AAIVKELHAK RATAKEREEK REKDIKEEAQ
0401: HLMDDDSGVD GDRGMRDVDD LDLENGWLKG QRQVMDLESL AFNQGGFTRE NNKCELPDRS FRIRGKEFDE VHVPWVSKKF DSNEKLVKIS DLPEWAQPAF
0501: RGMQQLNRVQ SKVYGTALFK ADNILLCAPT GAGKTNVAVL TILHQLGLNM NPGGTFNHGN YKIVYVAPMK ALVAEVVDSL SQRLKDFGVT VKELSGDQSL
0601: TGQEIKETQI IVTTPEKWDI ITRKSGDRTY TQLVRLLIID EIHLLDDNRG PVLESIVART LRQIESTKEH IRLVGLSATL PNCDDVASFL RVDLKNGLFI
0701: FDRSYRPVPL GQQYIGINVK KPLRRFQLMN DICYQKVVAV AGKHQVLIFV HSRKETAKTA RAIRDTAMAN DTLSRFLKED SQSREILKCL AGLLKNNDLK
0801: ELLPYGFAIH HAGLTRTDRE IVENQFRWGN LQVLISTATL AWGVNLPAHT VIIKGTQVYN PERGEWMELS PLDVMQMIGR AGRPQYDQQG EGIIITGYSK
0901: LQYYLRLMNE QLPIESQFIS KLADQLNAEI VLGTIQNARE ACHWLGYTYL YVRMVRNPTL YGVSPDALAK DLLLEERRAD LIHSAATILD KNNLIKYDRK
1001: SGHFQVTDLG RIASYYYISH GTIAAYNENL KPTMNDIELC RLFSLSEEFK YVTVRQDEKM ELAKLLDRVP IPVKETLEDP SAKINVLLQV YISKLKLEGL
1101: SLTSDMVYIT QSAGRLLRAI FEIVLKRGWA QLSQKALNLS KMVGKRMWSV QTPLWQFPGI PKEILMKLEK NDLVWERYYD LSSQELGELI CNPKMGRPLH
1201: KYIHQFPKLK LAAHVQPISR SVLQVELTVT PDFHWDDKAN KYVEPFWIIV EDNDGEKILH HEYFLFKKRV IDEDHTLNFT VPISEPIPPQ YFIRVVSDKW
1301: LDSPTVLPVS FRHLILPEKY PPPTELLDLQ PLPVMALRNP SYETLYQDFK HFNPVQTQVF TVLYNTSDNV VVAAPTGSGK TICAEFAILR NHLEGPDSAM
1401: RVVYIAPLEA IAKEQFRDWE KKFGKGLGLR VVELTGETLL DLKLLEKGQI IISTPEKWDA LSRRWKQRKY IQQVSLFIVD ELHLIGGQGG QVLEVIVSRM
1501: RYISSQVGNK IRIVALSTSL ANAKDLGEWI GASSCGVFNF PPNVRPVPLE IHIHGVDILS FEARMQAMTK PTYTAIVQHA KNKKPAIVFV PTRKHVRLTA
1601: VDLIAYSHMD NMKSPDFLLG NLEELEPFLI QICEETLKET LRHGIGYLHE GLSNLDQEIV TQLFEAGRIQ VCVMSSSLCW GTPLKAHLVV VMGTHFYDGR
1701: ENSHSDYPIS NLLQMMGRGS RPLLDDAGKC VIFCHAPRKE YYKKFLYEAL PVESHLQHFL HDNFNAEVVA RVIENKQDAV DYLTWSFMYR RLPQNPNYYN
1801: LLGVSHRHLS DHLSELVENT LSDLEVSKCI EIDNELDLSP LNLGMIASYY YINYTTIERF SSLLASKTKM KGLLEILTSA SEYDLIPIRP GEEDAVRRLI
1901: NHQRFSFQNP RCTDPRVKTS ALLQAHFSRQ KISGNLVMDQ CEVLLSATRL LQAMVDVISS NGCLNLALLA MEVSQMVTQG MWDRDSMLLQ LPHFTKDLAK
2001: RCHENPGNNI ETIFDLVEME DDKRQELLQM SDAQLLDIAR FCNRFPNIDL TYEIVGSNEV SPGKDITLQV LLERDMEGRT EVGPVDAPRY PKTKEEGWWL
2101: VVGEAKTNQL MAIKRISLQR KAQVKLEFAV PTETGEKSYT LYFMCDSYLG CDQEYSFTVD VKDSDAADHM EE
Arabidopsis Description
BRR2BDExH-box ATP-dependent RNA helicase DExH13 [Source:UniProtKB/Swiss-Prot;Acc:O48534]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.