Factsheet for Solyc06g082100.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 28394025
endoplasmic reticulum: 29145071

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078069	Potato	cytosol	99.29	89.79
VIT_05s0102g00480.t01	Wine grape	cytosol	82.66	78.62
Solyc06g071620.2.1	Tomato	nucleus	78.18	76.32
CDY48648	Canola	nucleus	39.57	75.61
KRH13647	Soybean	cytosol	83.83	75.49
KRH43818	Soybean	nucleus	83.72	75.4
GSMUA_Achr3P29700_001	Banana	cytosol	69.02	73.75
CDY01342	Canola	cytosol	41.4	73.47
CDY31854	Canola	cytosol	12.11	73.23
AT1G20960.1	Thale cress	cytosol	80.82	73.19
CDY01343	Canola	cytosol	12.05	72.92
CDY28773	Canola	cytosol	12.05	72.92
CDY48646	Canola	cytosol	12.05	72.92
TraesCS7D01G199800.1	Wheat	cytosol	57.17	72.75
CDY56796	Canola	cytosol	33.72	72.46
Bra012260.1-P	Field mustard	cytosol	79.86	71.82
Bra022718.1-P	Field mustard	cytosol	79.7	71.62
Bra020835.1-P	Field mustard	cytosol	75.48	71.11
Bra008413.1-P	Field mustard	cytosol	33.72	70.83
CDY31853	Canola	nucleus	42.88	70.19
Zm00001d022286_P003	Maize	plastid	76.96	69.28
EER99779	Sorghum	cytosol	76.75	69.16
AT2G42270.1	Thale cress	cytosol	76.14	68.92
TraesCS6A01G024900.1	Wheat	nucleus	76.35	68.92
TraesCS6B01G034100.1	Wheat	cytosol	76.35	68.88
TraesCS6D01G028200.1	Wheat	cytosol	76.25	68.73
HORVU6Hr1G004350.3	Barley	cytosol, mitochondrion, nucleus	76.3	68.49
EES04337	Sorghum	cytosol	75.38	68.2
CDX76355	Canola	cytosol	44.35	67.23
CDY22556	Canola	cytosol	71.41	66.76
TraesCS7A01G238700.1	Wheat	cytosol	69.18	64.39
TraesCS7B01G103700.1	Wheat	cytosol	70.45	63.88
KXG37223	Sorghum	cytosol	71.52	63.79
HORVU7Hr1G040480.2	Barley	cytosol, mitochondrion	69.48	63.53
Os03t0743800-00	Rice	nucleus	68.77	63.06
CDX76356	Canola	nucleus	12.67	62.88
CDY22275	Canola	cytosol, nucleus, plasma membrane	31.99	59.28
Solyc06g065300.2.1	Tomato	cytosol	17.29	51.59
Solyc06g069480.2.1	Tomato	nucleus	38.61	36.35
Solyc02g086580.2.1	Tomato	cytosol	11.8	19.27
Solyc12g017860.1.1	Tomato	nucleus	8.44	17.66
Solyc01g103080.2.1	Tomato	nucleus	8.8	17.46
Solyc05g047520.2.1	Tomato	nucleus	8.19	17.2
Solyc06g005990.2.1	Tomato	cytosol	10.33	14.92
Solyc05g006530.2.1	Tomato	nucleus	8.34	14.21
Solyc08g068110.1.1	Tomato	nucleus	5.04	14.04
Solyc08g068120.1.1	Tomato	cytosol, nucleus, plastid	9.61	13.03

Protein Annotations

Gene3D:1.10.10.2530	Gene3D:1.10.150.20	Gene3D:1.10.3380.10	MapMan:16.4.7.1.4	Gene3D:2.60.40.150	Gene3D:3.40.50.300
InterPro:AAA+_ATPase	InterPro:C2_domain_sf	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR035892	InterPro:Ig_E-set	UniProt:K4CA69	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFAM:PF02889	PIRSF:PIRSF039073	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR24075
PANTHER:PTHR24075:SF5	SMART:SM00382	SMART:SM00487	SMART:SM00490	SMART:SM00973	SUPFAM:SSF158702
SUPFAM:SSF46785	SUPFAM:SSF52540	SUPFAM:SSF81296	InterPro:Sec63-dom	EnsemblPlantsGene:Solyc06g082100.2	EnsemblPlants:Solyc06g082100.2.1
UniParc:UPI000276559B	InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6:+:48031645..48040520

Molecular Weight (calculated)

223459.0 Da

IEP (calculated)

5.501

GRAVY (calculated)

-0.382

Length

1966 amino acids

Sequence
(BLAST)

0001: MSNLGGGAEA HARFKQYEYR ANSSLVLTTD SRPRDTHEPS GEPESLYGKI DPKSFGDRAY KGRPPELDEK LQKARKKKER EPLVSEPTRQ SKKRRLQEES
0101: VLTSSEEGVY QPKTKETRAA YEAMLSLIQQ QLGGQPLNIV SGAADEMLAV LKNDNFKNPE KKKEIEKLLN PISNQVFDQL VSIGRLITDY QDGGDASVSA
0201: AADGDDGLDD DVGVAVEFEE NEEEEEESDL DVVPDDEEED DDVMEASASG AMQMGSGIDD DEMREADEGM TLNVQDIDAY WLQRKISQAY EQQIDPQQSQ
0301: KLAEEVLKIL AEGDDREVET KLLVHLQFDK FSLIKYLLRN RLKVVWCTRL ARAEDQENRK KIEEEMLGLG QDHVAILEQL HATRATAKER QKNLEKSIRE
0401: EARRLKDESG VDGDGERKAL VDRDLDNGWL MGQRQFLDLD SLAFQQGGLL MANKKCELPV GSYRNHKKGY EEVHVPALKP RPLDPGEELV KISSIPEWAQ
0501: PAFSGMTQLN RVQSKVYETA LFSPENILLC APTGAGKTNV AMLTILQQIA LNRNEDDGTF NHNNYKIVYV APMKALVAEV VGNLSKRLEH YGVTVKELSG
0601: DQTLTRQQIE ETQIIVTTPE KWDIITRKSG DRTYTQLVKL LIVDEIHLLH DNRGPVLESI IARTIRQIET TKEHIRLVGL SATLPNYEDV AVFLRVDLKK
0701: GLFHFDNSYR PVPLAQQYIG ITVKKPLQRF QLMNDVCYEK VISIAGKHQV LIFVHSRKET SKTARAIRDT ALANDTLGKF LKEDSLTREL LQSQTELVKS
0801: NDLKDLLPYG FAIHHAGMVR TDRQLVEDLF ADGHVQVLVS TATLAWGVNL PAHTVIIKGT QIYNPEKGAW TELSPLDVMQ MLGRAGRPQY DTYGEGIILT
0901: GHSELQYYLS LMNQQLPIES QFISKLADQL NAEIVLGTVL NAKEACKWLL YTYLYVRMVR NPTLYGLPAD ALKTDYALEE RRADLVHSAA VLLDKNNLVK
1001: YDRKSGYFQV TDLGRIASYY YITHGTISTY NEHLKPTMGD IELCRLFSLS EEFKYVTVRQ DEKMELAKLL DRVPIPIKES LEEPSAKINV LLQAYISRLK
1101: LEGLSLSSDM VYITQSAARL MRALFEIVLK RGWAQLAEKA LKWCKMISKR MWSVQTPLRQ FHGIPNEILM KLEKKDLAWE RYYDLSSQEL GELIRFPKMG
1201: RTLHKFIHQF PKLNLAAHVQ PITRSVLRVE LTITPDFQWE DKVHGYVESF WIIVEDNDGE YILHHEYFML KKQYIDEDHT LNFTVPIYEP LPPQYFIRVV
1301: SDKWLGSLTV LPVSFRHLIL PEKYPPPTEL LDLQPLPVTA LRNPAYEALY QDFKHFNPVQ TQVFTVLYNS DDNVLVAAPT GSGKTICAEF AILRNHQKGP
1401: DSTIRAVYIA PLEALAKERF NDWKTKFGDH LGMRVVELTG ETASDLKLLE KGQLIISTPE KWDALSRRWK QRKHVQQVSL FIIDELHLIG GQGGPILEVI
1501: VSRMRYISSQ VENKIRIVAL STSLANAKDL GEWIGATSHG LFNFPPGVRP VPLEIHIQGV DIANFEARMQ AMTKPTYTAI VQHARKGKPA LVYVPTRKHA
1601: RLTAVDLMTY SSMDSEDTPI FLLRSAEELE PFVERINEPM LQETLKYGVG YLHEGLSATD QDITKLKGLL EILASASEFE QLPIRPGEEE LIRRLINHLR
1701: FSFENPKYTD PHVKANALLQ AHFSRQMVGG NLASDQQEVL LSATRLLQAM VDVISSNGWL SLALLTMEVS QMVTQGMWER DSMLLQLPHF TKELAKKCQE
1801: NPGRSIETVF DLVEMEDNER RELLQMSDLQ LLDIARFCNR FPNIDLTYHV VDSDNVSAGD DVSVQVTLER DLEGRTEVGP VFAPRYPKTK EEGWWLVVGD
1901: TKSNQLLAIK RVTLQRKSKV KLDFAAPAEA GMRNYTLYFM CDSYLGCDQE YNFTLDVKEA MAEDDS

Best Arabidopsis Sequence Match ( AT1G20960.1 )
(BLAST)

0001: MANLGGGAEA HARFKQYEYR ANSSLVLTTD NRPRDTHEPT GEPETLWGKI DPRSFGDRVA KGRPQELEDK LKKSKKKERD VVDDMVNIRQ SKRRRLREES
0101: VLTDTDDAVY QPKTKETRAA YEAMLGLIQK QLGGQPPSIV SGAADEILAV LKNDAFRNPE KKMEIEKLLN KIENHEFDQL VSIGKLITDF QEGGDSGGGR
0201: ANDDEGLDDD LGVAVEFEEN EEDDEESDPD MVEEDDDEED DEPTRTGGMQ VDAGINDEDA GDANEGTNLN VQDIDAYWLQ RKISQAYEQQ IDPQQCQVLA
0301: EELLKILAEG DDRVVEDKLL MHLQYEKFSL VKFLLRNRLK VVWCTRLARA EDQEERNRIE EEMRGLGPEL TAIVEQLHAT RATAKEREEN LQKSINEEAR
0401: RLKDETGGDG GRGRRDVADR DSESGWVKGQ RQMLDLESLA FDQGGLLMAN KKCDLPPGSY RSHGKGYDEV HVPWVSKKVD RNEKLVKITE MPDWAQPAFK
0501: GMQQLNRVQS KVYDTALFKA ENILLCAPTG AGKTNVAMLT ILQQLEMNRN TDGTYNHGDY KIVYVAPMKA LVAEVVGNLS NRLKDYGVIV RELSGDQSLT
0601: GREIEETQII VTTPEKWDII TRKSGDRTYT QLVRLLIIDE IHLLHDNRGP VLESIVARTL RQIETTKENI RLVGLSATLP NYEDVALFLR VDLKKGLFKF
0701: DRSYRPVPLH QQYIGISVKK PLQRFQLMND LCYQKVLAGA GKHQVLIFVH SRKETSKTAR AIRDTAMAND TLSRFLKEDS VTRDVLHSHE DIVKNSDLKD
0801: ILPYGFAIHH AGLSRGDREI VETLFSQGHV QVLVSTATLA WGVNLPAHTV IIKGTQVYNP EKGAWMELSP LDVMQMLGRA GRPQYDQHGE GIIITGYSEL
0901: QYYLSLMNEQ LPIESQFISK LADQLNAEIV LGTVQNAREA CHWLGYTYLY IRMVRNPTLY GLAPDALAKD VVLEERRADL IHSAATILDK NNLVKYDRKS
1001: GYFQVTDLGR IASYYYITHG TIATYNEHLK PTMGDIDLYR LFSLSDEFKY VTVRQDEKME LAKLLDRVPI PIKETLEEPS AKINVLLQAY ISQLKLEGLS
1101: LTSDMVYITQ SAGRLVRALY EIVLKRGWAQ LAEKALNLSK MVGKRMWSVQ TPLRQFHGLS NDILMQLEKK DLVWERYYDL SAQELGELIR SPKMGKPLHK
1201: FIHQFPKVTL SAHVQPITRT VLNVELTVTP DFLWDEKIHK YVEPFWIIVE DNDGEKILHH EYFLLKKQYI DEDHTLHFTV PIFEPLPPQY FVRVVSDKWL
1301: GSETVLPVSF RHLILPEKYP PPTELLDLQP LPVTALRNPN YEILYQDFKH FNPVQTQVFT VLYNTNDNVL VAAPTGSGKT ICAEFAILRN HHEGPDATMR
1401: VVYIAPLEAI AKEQFRIWEG KFGKGLGLRV VELTGETALD LKLLEKGQII ISTPEKWDAL SRRWKQRKYV QQVSLFIVDE LHLIGGQHGP VLEVIVSRMR
1501: YISSQVINKI RIVALSTSLA NAKDLGEWIG ASSHGLFNFP PGVRPVPLEI HIQGVDISSF EARMQAMTKP TYTAIVQHAK NKKPAIVFVP TRKHVRLTAV
1601: DLMAYSHMDN PQSPDFLLGK LEELDPFVEQ IREETLKETL CHGIGYLHEG LSSLDQEIVT QLFEAGRIQV CVMSSSLCWG TPLTAHLVVV MGTQYYDGRE
1701: NSHSDYPVPD LLQMMGRASR PLLDNAGKCV IFCHAPRKEY YKKFLYEAFP VESQLQHFLH DNFNAEVVAG VIENKQDAVD YLTWTFMYRR LPQNPNYYNL
1801: QGVSHRHLSD HLSELVENTL SDLEASKCIE VEDEMELSPL NLGMIASYYY ISYTTIERFS SLLSSKTKMK GLLEILTSAS EYDMIPIRPG EEDTVRRLIN
1901: HQRFSFENPK CTDPHVKANA LLQAHFSRQN IGGNLAMDQR DVLLSATRLL QAMVDVISSN GWLNLALLAM EVSQMVTQGM WERDSMLLQL PHFTKDLAKR
2001: CQENPGKNIE TVFDLVEMED EERQELLKMS DAQLLDIARF CNRFPNIDLT YEIVGSEEVN PGKEVTLQVM LERDMEGRTE VGPVDSLRYP KTKEEGWWLV
2101: VGDTKTNQLL AIKRVSLQRK VKVKLDFTAP SEPGEKSYTL YFMCDSYLGC DQEYSFSVDV KGSGAGDRME E

Arabidopsis Description

BRR2ADExH-box ATP-dependent RNA helicase DExH12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYP1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.