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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
PPI

Inferred distinct locusB in Crop

locusBlocations
KXG21735

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G20960.1 KXG21735 AT5G05410.1 18552202
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EER99779 Sorghum cytosol 87.52 88.41
EES04337 Sorghum cytosol 84.89 86.1
TraesCS6A01G024900.1 Wheat nucleus 81.9 82.87
TraesCS6B01G034100.1 Wheat cytosol 81.85 82.79
TraesCS6D01G028200.1 Wheat cytosol 81.85 82.71
HORVU6Hr1G004350.3 Barley cytosol, mitochondrion, nucleus 82.03 82.56
TraesCS7D01G199800.1 Wheat cytosol 54.58 77.86
TraesCS7B01G103700.1 Wheat cytosol 76.09 77.35
TraesCS7A01G238700.1 Wheat cytosol 73.96 77.18
HORVU7Hr1G040480.2 Barley cytosol, mitochondrion 75.18 77.07
GSMUA_Achr3P29700_001 Banana cytosol 63.29 75.82
Os03t0743800-00 Rice nucleus 73.32 75.37
VIT_05s0102g00480.t01 Wine grape cytosol 68.78 73.34
PGSC0003DMT400078069 Potato cytosol 70.69 71.67
KRH13647 Soybean cytosol 70.96 71.64
KRH43818 Soybean nucleus 70.87 71.55
Solyc06g082100.2.1 Tomato nucleus 63.79 71.52
CDX76355 Canola cytosol 41.02 69.7
AT1G20960.1 Thale cress cytosol 68.19 69.23
Solyc06g071620.2.1 Tomato nucleus 62.43 68.32
Bra012260.1-P Field mustard cytosol 67.65 68.21
Bra022718.1-P Field mustard cytosol 67.51 68.01
Bra020835.1-P Field mustard cytosol 63.79 67.37
AT2G42270.1 Thale cress cytosol 65.7 66.67
CDY48648 Canola nucleus 31.03 66.47
CDY56796 Canola cytosol 26.95 64.92
CDY22556 Canola cytosol 61.71 64.67
Bra008413.1-P Field mustard cytosol 27.27 64.21
CDY01342 Canola cytosol 32.21 64.08
CDY31853 Canola nucleus 34.85 63.95
CDY52687 Canola cytosol, mitochondrion 24.59 63.17
CDY01343 Canola cytosol 9.21 62.46
CDY28773 Canola cytosol 9.21 62.46
CDY31854 Canola cytosol 9.21 62.46
CDY48646 Canola cytosol 9.21 62.46
PGSC0003DMT400069435 Potato mitochondrion 6.49 61.11
Solyc06g065300.2.1 Tomato cytosol 16.79 56.15
CDY22275 Canola cytosol, nucleus, plasma membrane 25.82 53.63
CDX76356 Canola nucleus 9.57 53.28
KXG39883 Sorghum mitochondrion 36.52 38.63
EES02351 Sorghum nucleus 8.26 18.13
EER87693 Sorghum cytosol 8.17 17.98
OQU85316 Sorghum nucleus 10.21 17.37
KXG29518 Sorghum cytosol 9.57 15.39
OQU85441 Sorghum plastid 7.53 13.95
OQU79067 Sorghum plastid 12.66 13.43
CDY04587 Canola plastid 2.09 12.57
Protein Annotations
Gene3D:1.10.10.2530Gene3D:1.10.150.20Gene3D:1.10.3380.10MapMan:16.4.7.1.4Gene3D:2.60.40.150Gene3D:3.40.50.300
UniProt:A0A1B6QH23InterPro:AAA+_ATPaseInterPro:C2_domain_sfncoils:CoilInterPro:DEAD/DEAH_box_helicase_domGO:GO:0000166
GO:GO:0003674GO:GO:0003676GO:GO:0005488GO:GO:0005524InterPro:Helicase_ATP-bdInterPro:Helicase_C
InterPro:IPR001650InterPro:IPR014001InterPro:IPR035892InterPro:Ig_E-setEnsemblPlants:KXG37223ProteinID:KXG37223
ProteinID:KXG37223.1InterPro:P-loop_NTPasePFAM:PF00270PFAM:PF00271PFAM:PF02889PIRSF:PIRSF039073
PFscan:PS51192PFscan:PS51194PANTHER:PTHR24075PANTHER:PTHR24075:SF5SMART:SM00382SMART:SM00487
SMART:SM00490SMART:SM00973EnsemblPlantsGene:SORBI_3001G028200SUPFAM:SSF158702SUPFAM:SSF46785SUPFAM:SSF52540
SUPFAM:SSF81296InterPro:Sec63-domUniParc:UPI00081AD0E5InterPro:WH_DNA-bd_sfSEG:seg:
Description
hypothetical protein
Coordinates
chr1:-:2186952..2202877
Molecular Weight (calculated)
248557.0 Da
IEP (calculated)
6.250
GRAVY (calculated)
-0.325
Length
2204 amino acids
Sequence
(BLAST)
0001: MGGRRDDPPP SGEREDDDSS PRRAPKAHMA NLGGGGGAEA HARFKQYEYR ANASLVLTTD SRPRDTHHEP SGEPQTQWNR IDPKSFGDRA VQNKPPPELE
0101: EKLSRSRTRK AKRDAANTGL PRRDAKRRRR AASDRGISVL SLTDDAVYMP QTKETSAVYD ALLSLIQQKL GGQPLDVLAG AAEEVLATLK NDKVKNPDKK
0201: KAIEQLLGTT SNRLFDQLVS IGKLITDFHD VAASNAGAGA PFADAMDTTL DDNVSFAVGW EENEDDESGS DQVQDELDDD NEDDTTELNG LEGMQMDSAL
0301: DDNDMQNANQ GLAVNVQDID AYWLQRKIFQ AYGDGDIDVQ QSQKLAENIL KIIAKGDDRD VENHLVMLLD YEKFDLIKLL LRNRLKVVWC TRLARAEDQE
0401: QRKNIEEEMI NDPSLAPILE QLHATRASAK ERQENVEKSI RDEAKRLLNN DGVSNRRAAE GDMESEWFKG QKRLLDLDSL SFHQGGLFMS IKKCELPTGS
0501: FRISHKGYEE VHVPAPKAKP YETGEKIVKI SDMPEWAKPA FDGMTQLNRI QSRVYDTALF KPDNILICAP TGAGKTNVAV LTILQQIGLH MKDGEFENTK
0601: YKIVYVAPMK ALVAELVGNL SKRLAYYNVT VKELSGDQNL TKQQIDETQV IVTTPEKWDI VTRKSGDRTY TQLVKLLIID EIHLLHDNRG PVLESIVART
0701: VRQIETTKVH IRLVGLSATL PNHDDVALFL RVHKVNLFYF DNCYRPCPLA QQYIGITVRK PLQRIWLMNE ICYEKVMASA GKHQVLIFVH SRKDTAKTAK
0801: AIRDLALANN TVSCFLKNES ASQEILGTHA DLVDNNDLKD LLPYGFAIHH SGMARVDREL VEELFADKHI QVLVSTTTLA WGVNLPAHTV IIKGTQIYSP
0901: EKGAWTELCP LDVLQMLGRA GRPQYDTNGE GIILTSHSEL LFYLSLMNQQ LPIESQFISK LADQLNAEIV LGTIQNAREA CSWLGYTYLY IRMLRDPTLY
1001: GLPADILERD KTLEERRADL IHSAANLLDK NNLIKYDRKT GYFQVTDLGR IASYHYISHR TISKYNECLK PTMGDIELCR LFSLSEEFEH VGARLDEKME
1101: LGKLLDRVPI PVKESLEDPS AKINVLLQAY ISRLKPEGLS LSSDMVYIIQ SAGHLLRALF EIVLKRGWAQ LAEKALNLCK AVDKQMWSVQ TPLWQFPGIP
1201: TEVLMKLEKK ELAWERCYDL SSQELGELIC YPKMGRLLHK CIHQLPKLNL SAHVQPITPT VLSFELTVTP DFQWDDKVHG YVEPFWVIVE DNNGESILHH
1301: EYFLLKKQYV DEDHTLNFTV PIYEPLPPKY FVHIVSDKWL GSKTILPACF SHLILPEKYA PPTQLLDLQP LPVNALRNAQ YEGLYSAFKH FNPIQTQVFT
1401: VLYNSDDSVL VAAPTGCGKT TCAEFAILRN HQRAVSGESN MRVVYIAPIE ALAKERYRDW GHKFAEFAKV VELTGETTAD LKLLDKGEII ISTPEKWDAL
1501: SRRWKQQKHI QQVSLFIVDE LHLLGSDKGH VLEVIVSRMR RISSHIASNI RIVALSASLG NAKDLGEWIG ATSHGLFNFP PALRPMPLEV HIQSVDIANF
1601: EARMQAMTKP AYTAIKQHTK NGKPALVYVP TSKHARLTAL DLCAYSSVEG GGAPFLLGSE DEMDAFTRGV EEEMLKNTLK CGVGYLHQGL SELDQELVTN
1701: LLLGGRIQVC VVSSTMCWRR LLPVHLVVIM GTRYCDGCEN ARKDYPIADL LQMMGHATLQ DNSGKCVILC HAPRKEYYKR FLSEAFLVES NLHHFLHDHM
1801: SAEVVAGVVE NKQDAVDYLT WTFMYRRLTK NPNYYNLQGV SHRHLSDHLS ELVETVLNDL ESSKSVAIED KYLKPLNLGL IASYYYISYT TIKHFGSMLT
1901: QKTKMKGLLE ILASASEYAE LAGHAGEEEF IEKLVHHQRF SIEKPKYGDP HVKANVLLQA HFSRHTVVGN LAADQRKILI STHRLLQAMV DVISSNGWLS
2001: LALSAMELSQ MVTQGMWDRD SVLLQVPHFT KDLAQRCQEN EVKPIESIFD LAEMGIDEMR DLLQLSNSQL KDIIEFFKRF PNVDMVYEVR EGDDTSAGDN
2101: VAVQVTLERD MADLPCEVGP VHAPRFPKPK EEGWWLVIGD SSTNQLLAIK RVALQKRARM KLEFSAPAEA GTMDYTIYLM SDSYLGCDQE HKFTVDIKDA
2201: GGDL
Best Arabidopsis Sequence Match ( AT1G20960.1 )
(BLAST)
0001: MANLGGGAEA HARFKQYEYR ANSSLVLTTD NRPRDTHEPT GEPETLWGKI DPRSFGDRVA KGRPQELEDK LKKSKKKERD VVDDMVNIRQ SKRRRLREES
0101: VLTDTDDAVY QPKTKETRAA YEAMLGLIQK QLGGQPPSIV SGAADEILAV LKNDAFRNPE KKMEIEKLLN KIENHEFDQL VSIGKLITDF QEGGDSGGGR
0201: ANDDEGLDDD LGVAVEFEEN EEDDEESDPD MVEEDDDEED DEPTRTGGMQ VDAGINDEDA GDANEGTNLN VQDIDAYWLQ RKISQAYEQQ IDPQQCQVLA
0301: EELLKILAEG DDRVVEDKLL MHLQYEKFSL VKFLLRNRLK VVWCTRLARA EDQEERNRIE EEMRGLGPEL TAIVEQLHAT RATAKEREEN LQKSINEEAR
0401: RLKDETGGDG GRGRRDVADR DSESGWVKGQ RQMLDLESLA FDQGGLLMAN KKCDLPPGSY RSHGKGYDEV HVPWVSKKVD RNEKLVKITE MPDWAQPAFK
0501: GMQQLNRVQS KVYDTALFKA ENILLCAPTG AGKTNVAMLT ILQQLEMNRN TDGTYNHGDY KIVYVAPMKA LVAEVVGNLS NRLKDYGVIV RELSGDQSLT
0601: GREIEETQII VTTPEKWDII TRKSGDRTYT QLVRLLIIDE IHLLHDNRGP VLESIVARTL RQIETTKENI RLVGLSATLP NYEDVALFLR VDLKKGLFKF
0701: DRSYRPVPLH QQYIGISVKK PLQRFQLMND LCYQKVLAGA GKHQVLIFVH SRKETSKTAR AIRDTAMAND TLSRFLKEDS VTRDVLHSHE DIVKNSDLKD
0801: ILPYGFAIHH AGLSRGDREI VETLFSQGHV QVLVSTATLA WGVNLPAHTV IIKGTQVYNP EKGAWMELSP LDVMQMLGRA GRPQYDQHGE GIIITGYSEL
0901: QYYLSLMNEQ LPIESQFISK LADQLNAEIV LGTVQNAREA CHWLGYTYLY IRMVRNPTLY GLAPDALAKD VVLEERRADL IHSAATILDK NNLVKYDRKS
1001: GYFQVTDLGR IASYYYITHG TIATYNEHLK PTMGDIDLYR LFSLSDEFKY VTVRQDEKME LAKLLDRVPI PIKETLEEPS AKINVLLQAY ISQLKLEGLS
1101: LTSDMVYITQ SAGRLVRALY EIVLKRGWAQ LAEKALNLSK MVGKRMWSVQ TPLRQFHGLS NDILMQLEKK DLVWERYYDL SAQELGELIR SPKMGKPLHK
1201: FIHQFPKVTL SAHVQPITRT VLNVELTVTP DFLWDEKIHK YVEPFWIIVE DNDGEKILHH EYFLLKKQYI DEDHTLHFTV PIFEPLPPQY FVRVVSDKWL
1301: GSETVLPVSF RHLILPEKYP PPTELLDLQP LPVTALRNPN YEILYQDFKH FNPVQTQVFT VLYNTNDNVL VAAPTGSGKT ICAEFAILRN HHEGPDATMR
1401: VVYIAPLEAI AKEQFRIWEG KFGKGLGLRV VELTGETALD LKLLEKGQII ISTPEKWDAL SRRWKQRKYV QQVSLFIVDE LHLIGGQHGP VLEVIVSRMR
1501: YISSQVINKI RIVALSTSLA NAKDLGEWIG ASSHGLFNFP PGVRPVPLEI HIQGVDISSF EARMQAMTKP TYTAIVQHAK NKKPAIVFVP TRKHVRLTAV
1601: DLMAYSHMDN PQSPDFLLGK LEELDPFVEQ IREETLKETL CHGIGYLHEG LSSLDQEIVT QLFEAGRIQV CVMSSSLCWG TPLTAHLVVV MGTQYYDGRE
1701: NSHSDYPVPD LLQMMGRASR PLLDNAGKCV IFCHAPRKEY YKKFLYEAFP VESQLQHFLH DNFNAEVVAG VIENKQDAVD YLTWTFMYRR LPQNPNYYNL
1801: QGVSHRHLSD HLSELVENTL SDLEASKCIE VEDEMELSPL NLGMIASYYY ISYTTIERFS SLLSSKTKMK GLLEILTSAS EYDMIPIRPG EEDTVRRLIN
1901: HQRFSFENPK CTDPHVKANA LLQAHFSRQN IGGNLAMDQR DVLLSATRLL QAMVDVISSN GWLNLALLAM EVSQMVTQGM WERDSMLLQL PHFTKDLAKR
2001: CQENPGKNIE TVFDLVEMED EERQELLKMS DAQLLDIARF CNRFPNIDLT YEIVGSEEVN PGKEVTLQVM LERDMEGRTE VGPVDSLRYP KTKEEGWWLV
2101: VGDTKTNQLL AIKRVSLQRK VKVKLDFTAP SEPGEKSYTL YFMCDSYLGC DQEYSFSVDV KGSGAGDRME E
Arabidopsis Description
BRR2ADExH-box ATP-dependent RNA helicase DExH12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYP1]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.