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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 2
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
nucleus: 23777608
nucleus: 26035336
msms PMID: 23777608 doi
H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.
msms PMID: 26035336 doi
M Li, X Yin, K Sakata, P Yang, S Komatsu
§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os02t0107000-01 Rice cytosol, nucleus 14.93 81.63
EER99779 Sorghum cytosol 81.48 80.06
Zm00001d022286_P003 Maize plastid 81.25 79.76
Os02t0108700-00 Rice cytosol 3.82 78.1
EES04337 Sorghum cytosol 78.82 77.77
TraesCS7B01G103700.1 Wheat cytosol 77.1 76.25
TraesCS7A01G238700.1 Wheat cytosol 75.09 76.23
TraesCS7D01G199800.1 Wheat cytosol 54.85 76.12
HORVU7Hr1G040480.2 Barley cytosol, mitochondrion 75.93 75.72
KXG37223 Sorghum cytosol 75.37 73.32
GSMUA_Achr3P29700_001 Banana cytosol 62.78 73.15
VIT_05s0102g00480.t01 Wine grape cytosol 67.68 70.2
KRH43818 Soybean nucleus 71.18 69.9
KRH13647 Soybean cytosol 71.13 69.86
PGSC0003DMT400078069 Potato cytosol 70.43 69.46
Solyc06g082100.2.1 Tomato nucleus 63.06 68.77
CDX76355 Canola cytosol 41.37 68.39
AT1G20960.1 Thale cress cytosol 68.05 67.2
PGSC0003DMT400069435 Potato mitochondrion 7.32 67.09
Bra012260.1-P Field mustard cytosol 67.68 66.38
Bra022718.1-P Field mustard cytosol 67.72 66.36
Solyc06g071620.2.1 Tomato nucleus 61.99 65.99
Bra020835.1-P Field mustard cytosol 64.18 65.93
Os02t0106966-00 Rice nucleus 8.4 65.22
AT2G42270.1 Thale cress cytosol 65.44 64.59
CDY52687 Canola cytosol, mitochondrion 25.7 64.22
CDY31853 Canola nucleus 35.49 63.36
CDY22556 Canola cytosol 61.71 62.91
CDY48648 Canola nucleus 30.04 62.59
CDY01343 Canola cytosol 9.47 62.46
CDY28773 Canola cytosol 9.47 62.46
CDY31854 Canola cytosol 9.47 62.46
CDY48646 Canola cytosol 9.47 62.46
CDY01342 Canola cytosol 32.28 62.45
CDY56796 Canola cytosol 26.4 61.86
Bra008413.1-P Field mustard cytosol 26.77 61.32
Solyc06g065300.2.1 Tomato cytosol 17.12 55.69
CDY22275 Canola cytosol, nucleus, plasma membrane 25.98 52.5
CDX76356 Canola nucleus 9.0 48.74
Os03t0213400-01 Rice cytosol, nucleus 22.39 42.14
Os02t0160000-01 Rice cytosol, plasma membrane 0.56 27.91
Os02t0617500-01 Rice cytosol 8.02 27.61
Os11t0176200-01 Rice nucleus 7.79 16.65
Os12t0279000-01 Rice mitochondrion 6.02 16.62
Os12t0291000-00 Rice nucleus 13.06 13.65
Os02t0739000-01 Rice plastid, vacuole 7.14 12.98
CDY04587 Canola plastid 2.05 12.02
Protein Annotations
Gene3D:1.10.10.2530Gene3D:1.10.150.20Gene3D:1.10.3380.10MapMan:16.4.7.1.4Gene3D:2.60.40.150Gene3D:3.40.50.300
ProteinID:AAP13001.1ProteinID:ABF98818.1ProteinID:BAS86328.1InterPro:C2_domain_sfncoils:CoilInterPro:DEAD/DEAH_box_helicase_dom
GO:GO:0000166GO:GO:0003674GO:GO:0003676GO:GO:0003824GO:GO:0004386GO:GO:0005488
GO:GO:0005524GO:GO:0016787InterPro:Helicase_ATP-bdInterPro:Helicase_CInterPro:IPR001650InterPro:IPR014001
InterPro:IPR035892InterPro:Ig_E-setEnsemblPlantsGene:Os03g0743800EnsemblPlants:Os03t0743800-00InterPro:P-loop_NTPasePFAM:PF00270
PFAM:PF00271PFAM:PF02889PIRSF:PIRSF039073PFscan:PS51192PFscan:PS51194PANTHER:PTHR24075
PANTHER:PTHR24075:SF5UniProt:Q84MP1SMART:SM00487SMART:SM00490SMART:SM00973SUPFAM:SSF158702
SUPFAM:SSF46785SUPFAM:SSF52540SUPFAM:SSF81296InterPro:Sec63-domUniParc:UPI000018F124InterPro:WH_DNA-bd_sf
SEG:seg:::::
Description
Similar to predicted protein. (Os03t0743800-00)
Coordinates
chr3:+:30523073..30531098
Molecular Weight (calculated)
242567.0 Da
IEP (calculated)
6.116
GRAVY (calculated)
-0.330
Length
2144 amino acids
Sequence
(BLAST)
0001: MAKPGSGGGA EAHARSRKYD YVENSNLVLG SGSGSRPRGG ADEHTGEPET LRGRIDPRSF GDRAVQAKPP VEPPRRRKAR DAADHDIGHR LDAKRRRRAA
0101: SACTAQREVS VLTLIDDVVY RPRTKETRAA YEALLSVIQR QLGGQPPDVL GSAADEVLAI LNNDKIKSPE KKRGIDKFLD PISDQMFHQF VSIGKLITDF
0201: HDTAVCDSAS ELDENFGVAV EFEQNEDDEG SDSDQVLDDL DEDDGDTMLN AAGAMQIGDE LDDDDMHNSN EELAINAQDI DAYWLQRKVS QAYEDIDPQV
0301: SQELSLEIMS FLSESDDKDV ENRLVTLLGY DNFDFIKLLV RNRLKIFWCT CLARAEGQEK RKMIEENMLS DPTLSPILEQ LHATRVSAKD RLKNMEKSIR
0401: DEAKRLTEKQ NAGINGARDQ RVVKRDMESG WLKGQKQLLD LENLTFHQGG LLMVNKKCEL PPGSFRTPHN GYEEVHVPAL KAKPYENGEK VVKISDMPDW
0501: AQPAFAGMTQ LNRIQSKVYD TALFKPDNII LCAPTGAGKT NVAVLTILQQ IGLHMKDGEF DNTKYKIVYV APMKALVAEV VGNLSARLKE YNITVRELSG
0601: DQNLTKQQID ETQIIVTTPE KWDIVTRKSE GLFWRALFRS VRQTETTKEH IRLVGLSATL PNYQDVAVFL RVHSGGLFHF DNSYRPCPLA QQYIGITVKK
0701: PFQRFQLMNQ ICYEKVMAAA GKHQVLIFVH SRKETAKTAR AIKDIALSNN KLTCFPKVES ASLEILADHA NHVKSNDLKD LLPYGFGIHH AGLTRVDREL
0801: IEGLFADKHL QALVSTATLA WGVNLPAHTV IIKGTQVYNP EKGAWTELSP LDVMQMLGRA GRPQYDTHGE GIILTEQSEL QYYLSLMNQQ LPIESQFISR
0901: LADHLNAEIV LGTIQNVREA CTWLGYTYLY IRMLRNPTLY GLPADIMETD NTLDERRVDL VHAAANILDW NNLIKYDRKT GYFQVTDLGR IASYYYVSHR
1001: TISTYNECLK PTMGDIELCR LFSLSEEFKY VSVRQDEKME LAKLFNCVPI PVKESLDEPS AKINVLLQAY ISRLELEGLS LSSDMVYIRQ NAGRLLRALF
1101: EIVLKRGWAQ LAEKALNLCK MIDKHIWNVQ IPLHQFPSIP KEILMKLEKK ELAWERYFDL SSQEIGELIR NPKMGMQLHK CIHQLPKLNL SAHVQPITPT
1201: VLGFELTITA DFQWDDELHG YVEPFWLIVE DNGGDNILHH EYFMLKKQYV DEDHTLNFTV PIYEPLPPQY FIRVVSDKWL GSQTILPVSF RHLTLPEKYA
1301: PPTELIDLQP LPVTALRNAR YESLYCAFKH FNPIQTQVFT ASYNSDDSVL VAAPTGSGKT ICAEFAILRN HQKAVSGDSN MRVVYVAPIE ALAKERYKDW
1401: ESKFGELARV VELTGETAAD LKLLDKGEII ISTAEKWDAL SRRWKQRKNV QQVSLFIFDE LHLIGSENGH ILEIIISRMR HMANHIGSNI RIVALSASLA
1501: NGKDLGEWIG TSSHSLFNFP PAVRPLPLEI HIQGWDVAIF EARMQAMSKP TYTAITQHAK HGKPALVFVP THKHARLTAV DLCAHSSAES GGTPFLLGSE
1601: DEMDTFTSGV NDEALKYTLK CGVGYLHEGL SDFDQELVTQ LFLGGRIQVC VASSKMCWGR SLPSHLVVVM GTQYYDGRGN SHTDYPVTDL LQMMGHANRP
1701: LQDDSGKCVI LCYAPRKEYY KKFLFEAFPV ESHLQHFLHD HMNAEVVAGL IENKQDAVDY LTWTFMYRRL AKNPNYYNLQ DVSHRHVSEH LSELVETVLN
1801: DLESTNCLAI EENIYLKTLN LGLIASYYYV TYTTIERFSS MLTQKTKLKG LLEILASASE YADLPSRPGE QKSIERLVHH QRFSVEKKVR YDDPHVKANA
1901: LLQCHFSRRT VEGDLAADQR EILLPAHRLL QALIDVISSN GWLTLALNAM ELSQMVTQGM WDRDSVLLQL PHFTEELARR CQENEGKAIE TIFDLAEMST
2001: HEMQDLLQLP SSQLQDIVGF LRRFPNIDMA FQVLEGDGGS VTVQVTLERE MADLLQSEAG PVHAPRFPKP KEEGWWLVIG DRSTDQLLAI KRVKLQKRAR
2101: VKLEFAAPAE AGRKDYMVYL MSDSYLGCDQ EYEFAVDVKD AGGD
Best Arabidopsis Sequence Match ( AT1G20960.1 )
(BLAST)
0001: MANLGGGAEA HARFKQYEYR ANSSLVLTTD NRPRDTHEPT GEPETLWGKI DPRSFGDRVA KGRPQELEDK LKKSKKKERD VVDDMVNIRQ SKRRRLREES
0101: VLTDTDDAVY QPKTKETRAA YEAMLGLIQK QLGGQPPSIV SGAADEILAV LKNDAFRNPE KKMEIEKLLN KIENHEFDQL VSIGKLITDF QEGGDSGGGR
0201: ANDDEGLDDD LGVAVEFEEN EEDDEESDPD MVEEDDDEED DEPTRTGGMQ VDAGINDEDA GDANEGTNLN VQDIDAYWLQ RKISQAYEQQ IDPQQCQVLA
0301: EELLKILAEG DDRVVEDKLL MHLQYEKFSL VKFLLRNRLK VVWCTRLARA EDQEERNRIE EEMRGLGPEL TAIVEQLHAT RATAKEREEN LQKSINEEAR
0401: RLKDETGGDG GRGRRDVADR DSESGWVKGQ RQMLDLESLA FDQGGLLMAN KKCDLPPGSY RSHGKGYDEV HVPWVSKKVD RNEKLVKITE MPDWAQPAFK
0501: GMQQLNRVQS KVYDTALFKA ENILLCAPTG AGKTNVAMLT ILQQLEMNRN TDGTYNHGDY KIVYVAPMKA LVAEVVGNLS NRLKDYGVIV RELSGDQSLT
0601: GREIEETQII VTTPEKWDII TRKSGDRTYT QLVRLLIIDE IHLLHDNRGP VLESIVARTL RQIETTKENI RLVGLSATLP NYEDVALFLR VDLKKGLFKF
0701: DRSYRPVPLH QQYIGISVKK PLQRFQLMND LCYQKVLAGA GKHQVLIFVH SRKETSKTAR AIRDTAMAND TLSRFLKEDS VTRDVLHSHE DIVKNSDLKD
0801: ILPYGFAIHH AGLSRGDREI VETLFSQGHV QVLVSTATLA WGVNLPAHTV IIKGTQVYNP EKGAWMELSP LDVMQMLGRA GRPQYDQHGE GIIITGYSEL
0901: QYYLSLMNEQ LPIESQFISK LADQLNAEIV LGTVQNAREA CHWLGYTYLY IRMVRNPTLY GLAPDALAKD VVLEERRADL IHSAATILDK NNLVKYDRKS
1001: GYFQVTDLGR IASYYYITHG TIATYNEHLK PTMGDIDLYR LFSLSDEFKY VTVRQDEKME LAKLLDRVPI PIKETLEEPS AKINVLLQAY ISQLKLEGLS
1101: LTSDMVYITQ SAGRLVRALY EIVLKRGWAQ LAEKALNLSK MVGKRMWSVQ TPLRQFHGLS NDILMQLEKK DLVWERYYDL SAQELGELIR SPKMGKPLHK
1201: FIHQFPKVTL SAHVQPITRT VLNVELTVTP DFLWDEKIHK YVEPFWIIVE DNDGEKILHH EYFLLKKQYI DEDHTLHFTV PIFEPLPPQY FVRVVSDKWL
1301: GSETVLPVSF RHLILPEKYP PPTELLDLQP LPVTALRNPN YEILYQDFKH FNPVQTQVFT VLYNTNDNVL VAAPTGSGKT ICAEFAILRN HHEGPDATMR
1401: VVYIAPLEAI AKEQFRIWEG KFGKGLGLRV VELTGETALD LKLLEKGQII ISTPEKWDAL SRRWKQRKYV QQVSLFIVDE LHLIGGQHGP VLEVIVSRMR
1501: YISSQVINKI RIVALSTSLA NAKDLGEWIG ASSHGLFNFP PGVRPVPLEI HIQGVDISSF EARMQAMTKP TYTAIVQHAK NKKPAIVFVP TRKHVRLTAV
1601: DLMAYSHMDN PQSPDFLLGK LEELDPFVEQ IREETLKETL CHGIGYLHEG LSSLDQEIVT QLFEAGRIQV CVMSSSLCWG TPLTAHLVVV MGTQYYDGRE
1701: NSHSDYPVPD LLQMMGRASR PLLDNAGKCV IFCHAPRKEY YKKFLYEAFP VESQLQHFLH DNFNAEVVAG VIENKQDAVD YLTWTFMYRR LPQNPNYYNL
1801: QGVSHRHLSD HLSELVENTL SDLEASKCIE VEDEMELSPL NLGMIASYYY ISYTTIERFS SLLSSKTKMK GLLEILTSAS EYDMIPIRPG EEDTVRRLIN
1901: HQRFSFENPK CTDPHVKANA LLQAHFSRQN IGGNLAMDQR DVLLSATRLL QAMVDVISSN GWLNLALLAM EVSQMVTQGM WERDSMLLQL PHFTKDLAKR
2001: CQENPGKNIE TVFDLVEMED EERQELLKMS DAQLLDIARF CNRFPNIDLT YEIVGSEEVN PGKEVTLQVM LERDMEGRTE VGPVDSLRYP KTKEEGWWLV
2101: VGDTKTNQLL AIKRVSLQRK VKVKLDFTAP SEPGEKSYTL YFMCDSYLGC DQEYSFSVDV KGSGAGDRME E
Arabidopsis Description
BRR2ADExH-box ATP-dependent RNA helicase DExH12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYP1]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.