Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G20960.1 | Thale cress | cytosol | 83.06 | 83.1 |
| CDY22556 | Canola | cytosol | 78.31 | 80.88 |
| VIT_05s0102g00480.t01 | Wine grape | cytosol | 74.31 | 78.08 |
| PGSC0003DMT400078069 | Potato | cytosol | 76.43 | 76.36 |
| Solyc06g082100.2.1 | Tomato | nucleus | 68.92 | 76.14 |
| KRH13647 | Soybean | cytosol | 76.24 | 75.86 |
| KRH43818 | Soybean | nucleus | 76.01 | 75.63 |
| GSMUA_Achr3P29700_001 | Banana | cytosol | 61.88 | 73.04 |
| Solyc06g071620.2.1 | Tomato | nucleus | 66.44 | 71.65 |
| Zm00001d022286_P003 | Maize | plastid | 71.5 | 71.11 |
| EER99779 | Sorghum | cytosol | 71.32 | 70.99 |
| TraesCS6A01G024900.1 | Wheat | nucleus | 70.4 | 70.2 |
| TraesCS6B01G034100.1 | Wheat | cytosol | 70.35 | 70.12 |
| TraesCS6D01G028200.1 | Wheat | cytosol | 70.4 | 70.11 |
| HORVU6Hr1G004350.3 | Barley | cytosol, mitochondrion, nucleus | 70.4 | 69.82 |
| EES04337 | Sorghum | cytosol | 69.84 | 69.81 |
| TraesCS7D01G199800.1 | Wheat | cytosol | 47.97 | 67.44 |
| TraesCS7B01G103700.1 | Wheat | cytosol | 65.79 | 65.91 |
| HORVU7Hr1G040480.2 | Barley | cytosol, mitochondrion | 65.1 | 65.77 |
| TraesCS7A01G238700.1 | Wheat | cytosol | 63.95 | 65.77 |
| KXG37223 | Sorghum | cytosol | 66.67 | 65.7 |
| Os03t0743800-00 | Rice | nucleus | 64.59 | 65.44 |
| Solyc06g065300.2.1 | Tomato | cytosol | 18.92 | 62.37 |
| AT5G61140.2 | Thale cress | plastid | 38.81 | 39.08 |
| AT3G27730.2 | Thale cress | nucleus | 11.69 | 22.22 |
| AT2G06990.1 | Thale cress | nucleus | 8.29 | 18.09 |
| AT1G59760.1 | Thale cress | cytosol, nucleus, plastid | 8.1 | 17.81 |
| AT3G46960.1 | Thale cress | nucleus | 9.94 | 16.04 |
| AT1G70070.1 | Thale cress | plastid | 8.29 | 15.37 |
| AT4G32700.2 | Thale cress | nucleus | 14.27 | 14.39 |
Protein Annotations
| Gene3D:1.10.10.2530 | Gene3D:1.10.150.20 | Gene3D:1.10.3380.10 | MapMan:16.4.7.1.4 | Gene3D:2.60.40.150 | Gene3D:3.40.50.300 |
| EntrezGene:818828 | InterPro:AAA+_ATPase | ProteinID:AAB88651.1 | ProteinID:AEC10098.1 | ArrayExpress:AT2G42270 | EnsemblPlantsGene:AT2G42270 |
| RefSeq:AT2G42270 | TAIR:AT2G42270 | RefSeq:AT2G42270-TAIR-G | EnsemblPlants:AT2G42270.1 | TAIR:AT2G42270.1 | EMBL:AY059740 |
| Unigene:At.12448 | InterPro:C2_domain_sf | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 | GO:GO:0006139 |
| GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009506 | GO:GO:0009987 |
| GO:GO:0016787 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR035892 |
| InterPro:Ig_E-set | RefSeq:NP_181756.1 | UniProt:O48534 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 |
| PFAM:PF02889 | PIRSF:PIRSF039073 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR24075 | PANTHER:PTHR24075:SF5 | SMART:SM00382 | SMART:SM00487 |
| SMART:SM00490 | SMART:SM00973 | SUPFAM:SSF158702 | SUPFAM:SSF46785 | SUPFAM:SSF52540 | SUPFAM:SSF81296 |
| InterPro:Sec63-dom | UniParc:UPI00000AB148 | InterPro:WH_DNA-bd_sf | SEG:seg | : | : |
Description
BRR2BDExH-box ATP-dependent RNA helicase DExH13 [Source:UniProtKB/Swiss-Prot;Acc:O48534]
Coordinates
chr2:+:17604076..17611333
Molecular Weight (calculated)
247403.0 Da
IEP (calculated)
5.775
GRAVY (calculated)
-0.340
Length
2172 amino acids
Sequence
(BLAST)
(BLAST)
0001: MTNLGGGGAE EQARLKQYGY KVNSSLVLNS DERRRDTHES SGEPESLRGR IDPKSFGDRV VRGRPHELDE RLNKSKKKKE RCDDLVSARE SKRVRLREVS
0101: VLNDTEDGVY QPKTKETRVA FEIMLGLIQQ QLGGQPLDIV CGAADEILAV LKNESVKNHE KKVEIEKLLN VITDQVFSQF VSIGKLITDY EEGGDSLSGK
0201: ASEDGGLDYD IGVALECEED DDESDLDMVQ DEKDEEDEDV VELNKTGVVQ VGVAINGEDA RQAKEDTSLN VLDIDAYWLQ RKISQEYEQK IDAQECQELA
0301: EELLKILAEG NDRDVEIKLL EHLQFEKFSL VKFLLQNRLK VVWCTRLARG RDQEERNQIE EEMLGLGSEL AAIVKELHAK RATAKEREEK REKDIKEEAQ
0401: HLMDDDSGVD GDRGMRDVDD LDLENGWLKG QRQVMDLESL AFNQGGFTRE NNKCELPDRS FRIRGKEFDE VHVPWVSKKF DSNEKLVKIS DLPEWAQPAF
0501: RGMQQLNRVQ SKVYGTALFK ADNILLCAPT GAGKTNVAVL TILHQLGLNM NPGGTFNHGN YKIVYVAPMK ALVAEVVDSL SQRLKDFGVT VKELSGDQSL
0601: TGQEIKETQI IVTTPEKWDI ITRKSGDRTY TQLVRLLIID EIHLLDDNRG PVLESIVART LRQIESTKEH IRLVGLSATL PNCDDVASFL RVDLKNGLFI
0701: FDRSYRPVPL GQQYIGINVK KPLRRFQLMN DICYQKVVAV AGKHQVLIFV HSRKETAKTA RAIRDTAMAN DTLSRFLKED SQSREILKCL AGLLKNNDLK
0801: ELLPYGFAIH HAGLTRTDRE IVENQFRWGN LQVLISTATL AWGVNLPAHT VIIKGTQVYN PERGEWMELS PLDVMQMIGR AGRPQYDQQG EGIIITGYSK
0901: LQYYLRLMNE QLPIESQFIS KLADQLNAEI VLGTIQNARE ACHWLGYTYL YVRMVRNPTL YGVSPDALAK DLLLEERRAD LIHSAATILD KNNLIKYDRK
1001: SGHFQVTDLG RIASYYYISH GTIAAYNENL KPTMNDIELC RLFSLSEEFK YVTVRQDEKM ELAKLLDRVP IPVKETLEDP SAKINVLLQV YISKLKLEGL
1101: SLTSDMVYIT QSAGRLLRAI FEIVLKRGWA QLSQKALNLS KMVGKRMWSV QTPLWQFPGI PKEILMKLEK NDLVWERYYD LSSQELGELI CNPKMGRPLH
1201: KYIHQFPKLK LAAHVQPISR SVLQVELTVT PDFHWDDKAN KYVEPFWIIV EDNDGEKILH HEYFLFKKRV IDEDHTLNFT VPISEPIPPQ YFIRVVSDKW
1301: LDSPTVLPVS FRHLILPEKY PPPTELLDLQ PLPVMALRNP SYETLYQDFK HFNPVQTQVF TVLYNTSDNV VVAAPTGSGK TICAEFAILR NHLEGPDSAM
1401: RVVYIAPLEA IAKEQFRDWE KKFGKGLGLR VVELTGETLL DLKLLEKGQI IISTPEKWDA LSRRWKQRKY IQQVSLFIVD ELHLIGGQGG QVLEVIVSRM
1501: RYISSQVGNK IRIVALSTSL ANAKDLGEWI GASSCGVFNF PPNVRPVPLE IHIHGVDILS FEARMQAMTK PTYTAIVQHA KNKKPAIVFV PTRKHVRLTA
1601: VDLIAYSHMD NMKSPDFLLG NLEELEPFLI QICEETLKET LRHGIGYLHE GLSNLDQEIV TQLFEAGRIQ VCVMSSSLCW GTPLKAHLVV VMGTHFYDGR
1701: ENSHSDYPIS NLLQMMGRGS RPLLDDAGKC VIFCHAPRKE YYKKFLYEAL PVESHLQHFL HDNFNAEVVA RVIENKQDAV DYLTWSFMYR RLPQNPNYYN
1801: LLGVSHRHLS DHLSELVENT LSDLEVSKCI EIDNELDLSP LNLGMIASYY YINYTTIERF SSLLASKTKM KGLLEILTSA SEYDLIPIRP GEEDAVRRLI
1901: NHQRFSFQNP RCTDPRVKTS ALLQAHFSRQ KISGNLVMDQ CEVLLSATRL LQAMVDVISS NGCLNLALLA MEVSQMVTQG MWDRDSMLLQ LPHFTKDLAK
2001: RCHENPGNNI ETIFDLVEME DDKRQELLQM SDAQLLDIAR FCNRFPNIDL TYEIVGSNEV SPGKDITLQV LLERDMEGRT EVGPVDAPRY PKTKEEGWWL
2101: VVGEAKTNQL MAIKRISLQR KAQVKLEFAV PTETGEKSYT LYFMCDSYLG CDQEYSFTVD VKDSDAADHM EE
0101: VLNDTEDGVY QPKTKETRVA FEIMLGLIQQ QLGGQPLDIV CGAADEILAV LKNESVKNHE KKVEIEKLLN VITDQVFSQF VSIGKLITDY EEGGDSLSGK
0201: ASEDGGLDYD IGVALECEED DDESDLDMVQ DEKDEEDEDV VELNKTGVVQ VGVAINGEDA RQAKEDTSLN VLDIDAYWLQ RKISQEYEQK IDAQECQELA
0301: EELLKILAEG NDRDVEIKLL EHLQFEKFSL VKFLLQNRLK VVWCTRLARG RDQEERNQIE EEMLGLGSEL AAIVKELHAK RATAKEREEK REKDIKEEAQ
0401: HLMDDDSGVD GDRGMRDVDD LDLENGWLKG QRQVMDLESL AFNQGGFTRE NNKCELPDRS FRIRGKEFDE VHVPWVSKKF DSNEKLVKIS DLPEWAQPAF
0501: RGMQQLNRVQ SKVYGTALFK ADNILLCAPT GAGKTNVAVL TILHQLGLNM NPGGTFNHGN YKIVYVAPMK ALVAEVVDSL SQRLKDFGVT VKELSGDQSL
0601: TGQEIKETQI IVTTPEKWDI ITRKSGDRTY TQLVRLLIID EIHLLDDNRG PVLESIVART LRQIESTKEH IRLVGLSATL PNCDDVASFL RVDLKNGLFI
0701: FDRSYRPVPL GQQYIGINVK KPLRRFQLMN DICYQKVVAV AGKHQVLIFV HSRKETAKTA RAIRDTAMAN DTLSRFLKED SQSREILKCL AGLLKNNDLK
0801: ELLPYGFAIH HAGLTRTDRE IVENQFRWGN LQVLISTATL AWGVNLPAHT VIIKGTQVYN PERGEWMELS PLDVMQMIGR AGRPQYDQQG EGIIITGYSK
0901: LQYYLRLMNE QLPIESQFIS KLADQLNAEI VLGTIQNARE ACHWLGYTYL YVRMVRNPTL YGVSPDALAK DLLLEERRAD LIHSAATILD KNNLIKYDRK
1001: SGHFQVTDLG RIASYYYISH GTIAAYNENL KPTMNDIELC RLFSLSEEFK YVTVRQDEKM ELAKLLDRVP IPVKETLEDP SAKINVLLQV YISKLKLEGL
1101: SLTSDMVYIT QSAGRLLRAI FEIVLKRGWA QLSQKALNLS KMVGKRMWSV QTPLWQFPGI PKEILMKLEK NDLVWERYYD LSSQELGELI CNPKMGRPLH
1201: KYIHQFPKLK LAAHVQPISR SVLQVELTVT PDFHWDDKAN KYVEPFWIIV EDNDGEKILH HEYFLFKKRV IDEDHTLNFT VPISEPIPPQ YFIRVVSDKW
1301: LDSPTVLPVS FRHLILPEKY PPPTELLDLQ PLPVMALRNP SYETLYQDFK HFNPVQTQVF TVLYNTSDNV VVAAPTGSGK TICAEFAILR NHLEGPDSAM
1401: RVVYIAPLEA IAKEQFRDWE KKFGKGLGLR VVELTGETLL DLKLLEKGQI IISTPEKWDA LSRRWKQRKY IQQVSLFIVD ELHLIGGQGG QVLEVIVSRM
1501: RYISSQVGNK IRIVALSTSL ANAKDLGEWI GASSCGVFNF PPNVRPVPLE IHIHGVDILS FEARMQAMTK PTYTAIVQHA KNKKPAIVFV PTRKHVRLTA
1601: VDLIAYSHMD NMKSPDFLLG NLEELEPFLI QICEETLKET LRHGIGYLHE GLSNLDQEIV TQLFEAGRIQ VCVMSSSLCW GTPLKAHLVV VMGTHFYDGR
1701: ENSHSDYPIS NLLQMMGRGS RPLLDDAGKC VIFCHAPRKE YYKKFLYEAL PVESHLQHFL HDNFNAEVVA RVIENKQDAV DYLTWSFMYR RLPQNPNYYN
1801: LLGVSHRHLS DHLSELVENT LSDLEVSKCI EIDNELDLSP LNLGMIASYY YINYTTIERF SSLLASKTKM KGLLEILTSA SEYDLIPIRP GEEDAVRRLI
1901: NHQRFSFQNP RCTDPRVKTS ALLQAHFSRQ KISGNLVMDQ CEVLLSATRL LQAMVDVISS NGCLNLALLA MEVSQMVTQG MWDRDSMLLQ LPHFTKDLAK
2001: RCHENPGNNI ETIFDLVEME DDKRQELLQM SDAQLLDIAR FCNRFPNIDL TYEIVGSNEV SPGKDITLQV LLERDMEGRT EVGPVDAPRY PKTKEEGWWL
2101: VVGEAKTNQL MAIKRISLQR KAQVKLEFAV PTETGEKSYT LYFMCDSYLG CDQEYSFTVD VKDSDAADHM EE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.