Factsheet for AT1G59760.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027835.1-P	Field mustard	nucleus	91.19	94.25
Bra035426.1-P	Field mustard	cytosol, golgi, plastid	58.7	93.55
CDY45148	Canola	endoplasmic reticulum	58.81	93.41
CDY30903	Canola	nucleus	92.81	92.91
CDY65064	Canola	nucleus	92.41	92.13
CDY45149	Canola	nucleus	35.22	92.06
Bra035425.1-P	Field mustard	nucleus	35.12	91.8
HORVU1Hr1G048420.1	Barley	cytosol	6.78	81.71
VIT_06s0009g01750.t01	Wine grape	cytosol	80.06	79.34
KRH46878	Soybean	nucleus	78.54	79.1
CDY33604	Canola	cytosol	22.98	77.21
Solyc01g103080.2.1	Tomato	nucleus	77.13	76.89
PGSC0003DMT400053368	Potato	nucleus	77.13	76.81
Os12t0279000-01	Rice	mitochondrion	60.32	76.8
TraesCS7D01G010500.1	Wheat	cytosol	76.32	76.32
EER87693	Sorghum	cytosol	77.02	76.02
TraesCS4A01G484300.2	Wheat	cytosol	76.52	75.98
Zm00001d045590_P005	Maize	cytosol, nucleus, plastid	76.42	75.5
GSMUA_Achr2P17890_001	Banana	cytosol, nucleus, plastid	76.01	74.21
HORVU7Hr1G001080.1	Barley	cytosol, nucleus, plastid	75.61	71.76
TraesCS7A01G010800.1	Wheat	cytosol	75.61	70.14
HORVU1Hr1G018080.31	Barley	cytosol, nucleus, plastid	18.12	61.3
AT2G06990.1	Thale cress	nucleus	47.37	47.04
AT3G46960.1	Thale cress	nucleus	35.53	26.06
AT1G70070.1	Thale cress	plastid	24.8	20.92
AT3G27730.2	Thale cress	nucleus	13.26	11.46
AT1G20960.1	Thale cress	cytosol	18.52	8.43
AT2G42270.1	Thale cress	cytosol	17.81	8.1
AT5G61140.2	Thale cress	plastid	16.5	7.56
AT4G32700.2	Thale cress	nucleus	16.19	7.43

Protein Annotations

Gene3D:1.10.3380.30	Gene3D:1.20.1500.20	MapMan:16.8.1.2.3.1	Gene3D:2.40.30.300	Gene3D:3.40.50.300	EntrezGene:842269
ProteinID:AAD39319.1	ProteinID:AEE33616.1	EMBL:AK176836	ArrayExpress:AT1G59760	EnsemblPlantsGene:AT1G59760	RefSeq:AT1G59760
TAIR:AT1G59760	RefSeq:AT1G59760-TAIR-G	EnsemblPlants:AT1G59760.1	TAIR:AT1G59760.1	Unigene:At.43462	ncoils:Coil
InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0000460	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003724	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005730
GO:GO:0006139	GO:GO:0006364	GO:GO:0006401	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019843	GO:GO:0031125	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	RefSeq:NP_176185.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
PFAM:PF08148	PFAM:PF13234	PIRSF:PIRSF005198	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230
PO:PO:0000293	PO:PO:0001017	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185
PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115
PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006
PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038
PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025195	PO:PO:0025281	PFscan:PS51192
PFscan:PS51194	PANTHER:PTHR12131	PANTHER:PTHR12131:SF7	UniProt:Q9XIF2	SMART:SM00487	SMART:SM00490
SMART:SM01142	SUPFAM:SSF52540	InterPro:Ski2-like	InterPro:Ski2_C	UniParc:UPI000009C9C8	InterPro:rRNA_proc-arch_dom
SEG:seg	:	:	:	:	:

Description

MTR4DExH-box ATP-dependent RNA helicase DExH9 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIF2]

Coordinates

chr1:-:21984428..21990286

Molecular Weight (calculated)

111893.0 Da

IEP (calculated)

5.937

GRAVY (calculated)

-0.266

Length

988 amino acids

Sequence
(BLAST)

001: MGSVKRKSVE ESSDSAPPQK VQREDDSTQI INEELVGCVH DVSFPENYVP LAPSVHNKPP AKDFPFTLDS FQSEAIKCLD NGESVMVSAH TSAGKTVVAS
101: YAIAMSLKEN QRVIYTSPIK ALSNQKYRDF KEEFSDVGLM TGDVTIDPNA SCLVMTTEIL RSMQYKGSEI MREVAWIIFD EVHYMRDSER GVVWEESIVM
201: APKNSRFVFL SATVPNAKEF ADWVAKVHQQ PCHIVYTDYR PTPLQHYVFP AGGNGLYLVV DEKSKFHEDS FQKSLNALVP TNESDKKRDN GKFQKGLVIG
301: KLGEESDIFK LVKMIIQRQY DPVILFSFSK KECEALAMQM SKMVLNSDDE KDAVETIFAS AIDMLSDDDK KLPQVSNILP ILKRGIGVHH SGLLPILKEV
401: IEILFQEGLI KCLFATETFS IGLNMPAKTV VFTNVRKFDG DKFRWLSSGE YIQMSGRAGR RGIDKRGICI LMVDEKMEPA VAKSMLKGSA DSLNSAFHLS
501: YNMLLNQLRC EEGDPENLLR NSFFQFQADR AIPDLEKQIK SLEEERDSLV IEEEESLKNY YNLILQYKSL KKDIREIVFT PKYCLPFLLP NRAVCLDCTN
601: DDEEPQSFSI EDQDTWGVIM KFNKVKSLSE DDDSRRPEDA NYTVDVLTRC MVSKDGVGKK KVKAVPIKER GEPVVVTVPL SQIKSLSSAI MNIPKDLVPL
701: EARENALKKV SELLSRHPDG IPLDPEVDMK IKSSSYKKTV RRLEALENLF EKHKIAKSPL ITEKLKVLQM KEELIAKIKS LKKTVRSSTA LAFKDELKAR
801: KRVLRRLGYI TSDNVVELKG KVACEISSAE ELTLTELMFS GIFKDAKVEE LVSLLSCFVW RERLPDAAKP REELDLLFIQ LQDTARRVAE VQLDCKVEID
901: VESFVQSFRP DIMEAVYAWA KGSKFYEVME IARVFEGSLI RAIRRMEEVL QQLIVAAKSI GETQLEAKLE EAVSKIKRDI VFAASLYL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.