Factsheet for TraesCS4A01G484300.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G001080.1	Barley	cytosol, nucleus, plastid	96.38	92.12
TraesCS7A01G010800.1	Wheat	cytosol	98.29	91.83
Os12t0279000-01	Rice	mitochondrion	69.35	88.92
EER87693	Sorghum	cytosol	89.05	88.51
Zm00001d045590_P005	Maize	cytosol, nucleus, plastid	88.24	87.8
VIT_06s0009g01750.t01	Wine grape	cytosol	79.2	79.04
GSMUA_Achr2P17890_001	Banana	cytosol, nucleus, plastid	80.3	78.95
PGSC0003DMT400053368	Potato	nucleus	77.79	78.02
KRH46878	Soybean	nucleus	76.68	77.78
Solyc01g103080.2.1	Tomato	nucleus	77.39	77.7
CDY45149	Canola	nucleus	29.45	77.51
Bra035425.1-P	Field mustard	nucleus	29.25	76.98
Bra027835.1-P	Field mustard	nucleus	73.57	76.57
AT1G59760.1	Thale cress	cytosol, nucleus, plastid	75.98	76.52
CDY30903	Canola	nucleus	74.77	75.38
CDY65064	Canola	nucleus	74.57	74.87
CDY45148	Canola	endoplasmic reticulum	46.53	74.44
Bra035426.1-P	Field mustard	cytosol, golgi, plastid	46.03	73.87
CDY33604	Canola	cytosol	16.68	56.46
TraesCS4A01G216300.1	Wheat	cytosol	48.74	48.31
TraesCS2A01G154400.1	Wheat	cytosol	48.44	47.58
TraesCS6A01G133400.3	Wheat	cytosol	35.18	25.6
TraesCS6A01G312100.1	Wheat	plastid	23.72	19.6
TraesCS4A01G136200.1	Wheat	nucleus	14.17	11.01
TraesCS6A01G024900.1	Wheat	nucleus	18.79	8.59
TraesCS4A01G057200.1	Wheat	mitochondrion, peroxisome	17.89	8.57
TraesCS7A01G238700.1	Wheat	cytosol	17.39	8.19
TraesCS1A01G323500.1	Wheat	plastid	15.88	7.66

Protein Annotations

Gene3D:1.10.3380.30	Gene3D:1.20.1500.20	MapMan:16.8.1.2.3.1	Gene3D:2.40.30.300	Gene3D:3.40.50.300	ncoils:Coil
InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003724
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006401	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF08148
PFAM:PF13234	PIRSF:PIRSF005198	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR12131	PANTHER:PTHR12131:SF7
SMART:SM00487	SMART:SM00490	SMART:SM01142	SUPFAM:SSF52540	InterPro:Ski2-like	InterPro:Ski2_C
EnsemblPlantsGene:TraesCS4A01G484300	EnsemblPlants:TraesCS4A01G484300.2	TIGR:cd00046	TIGR:cd00079	InterPro:rRNA_proc-arch_dom	SEG:seg

Description

No Description!

Coordinates

chr4A:-:738747832..738754193

Molecular Weight (calculated)

112516.0 Da

IEP (calculated)

6.485

GRAVY (calculated)

-0.298

Length

995 amino acids

Sequence
(BLAST)

001: MEAALKRKAA EAPADGPDPP LKAPRADAAP PPPAAAERVA CLHDVSYPEG YDASASGPRV VAGGGEGAAP AKTFPFPLDP FQSEAIRCLD NGESVMVSAH
101: TSAGKTVVAL YAIAMSLRNQ QRVIYTSPIK ALSNQKYREF KEEFSDVGLM TGDVTIEPNA SCLVMTTEIW RSMQYKGSEV MREVAWVIFD EVHYMRDRER
201: GVVWEESIVM APKNSRFVFL SATVPNAKEF ADWVAKVHKQ PCHIVYTDYR PTPLQHYVFP AGGDGLYLVV DENGKFREDS FQKSLNVLAP ATGSDKKREN
301: GKRQKGLVSA GKTNEESDIF KMVKMIIQRQ YDPVILFSFS KRECEFLAMQ MAKMDLNGDD EKVNIETIFW SAMDLLSDDD KKLPQVSNML PLLKRGIGVH
401: HSGLLPILKE VIEILFQEGL IKCLFATETF SIGLNMPAKT VVFTNVRKFD GDRFRWLSSG EYIQMSGRAG RRGIDQRGIC ILMVDEKMEP STAKMMLKGG
501: ADSLNSAFHL SYNMLLNQLR SEDGDPEKLL RHSFYQFQAD RALPDLEKQV RELEIERSSM VIEDEESVKD YYDLLQQYTT LKKDVRDIVL SPKYVLPFLQ
601: SGRLVRVQYS TDESTFSIDE NVSWGIIINF EKVKTNAEER RPEDCDYTVD VLTRCSVIKD ISGKKTMKVI PIKSRGEPVV ISLPLSQIDG LSSVRMYIPK
701: DLLPVEAREN TLRKVEEVLS RFAKDGVPLL DPEEDMEVKS SSYRKAARRI EALESLFEKH DIRNAPHIQH KLKVLHAKQE IKAKIKSIKK TMRASTALAF
801: KDELKARKRV LRRLGYITSE DVVEIKGKVA CEISSADELT LTELMFSGTL KDATVEQMVA LLSCFVWQEK LQDAPKPREE LDLLFYQLQE TARRVANLQL
901: ECKIQIDVES FVNSFRPDVM EAVYSWARGS KFHQIMEMTQ VFEGSLIRAI RRLEEVLQQL ILASQSIGET QLEAKLEEAV SKIKRDIVFA ASLYL

Best Arabidopsis Sequence Match ( AT1G59760.1 )
(BLAST)

001: MGSVKRKSVE ESSDSAPPQK VQREDDSTQI INEELVGCVH DVSFPENYVP LAPSVHNKPP AKDFPFTLDS FQSEAIKCLD NGESVMVSAH TSAGKTVVAS
101: YAIAMSLKEN QRVIYTSPIK ALSNQKYRDF KEEFSDVGLM TGDVTIDPNA SCLVMTTEIL RSMQYKGSEI MREVAWIIFD EVHYMRDSER GVVWEESIVM
201: APKNSRFVFL SATVPNAKEF ADWVAKVHQQ PCHIVYTDYR PTPLQHYVFP AGGNGLYLVV DEKSKFHEDS FQKSLNALVP TNESDKKRDN GKFQKGLVIG
301: KLGEESDIFK LVKMIIQRQY DPVILFSFSK KECEALAMQM SKMVLNSDDE KDAVETIFAS AIDMLSDDDK KLPQVSNILP ILKRGIGVHH SGLLPILKEV
401: IEILFQEGLI KCLFATETFS IGLNMPAKTV VFTNVRKFDG DKFRWLSSGE YIQMSGRAGR RGIDKRGICI LMVDEKMEPA VAKSMLKGSA DSLNSAFHLS
501: YNMLLNQLRC EEGDPENLLR NSFFQFQADR AIPDLEKQIK SLEEERDSLV IEEEESLKNY YNLILQYKSL KKDIREIVFT PKYCLPFLLP NRAVCLDCTN
601: DDEEPQSFSI EDQDTWGVIM KFNKVKSLSE DDDSRRPEDA NYTVDVLTRC MVSKDGVGKK KVKAVPIKER GEPVVVTVPL SQIKSLSSAI MNIPKDLVPL
701: EARENALKKV SELLSRHPDG IPLDPEVDMK IKSSSYKKTV RRLEALENLF EKHKIAKSPL ITEKLKVLQM KEELIAKIKS LKKTVRSSTA LAFKDELKAR
801: KRVLRRLGYI TSDNVVELKG KVACEISSAE ELTLTELMFS GIFKDAKVEE LVSLLSCFVW RERLPDAAKP REELDLLFIQ LQDTARRVAE VQLDCKVEID
901: VESFVQSFRP DIMEAVYAWA KGSKFYEVME IARVFEGSLI RAIRRMEEVL QQLIVAAKSI GETQLEAKLE EAVSKIKRDI VFAASLYL

Arabidopsis Description

MTR4DExH-box ATP-dependent RNA helicase DExH9 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIF2]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.