Factsheet for Bra035426.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, golgi, plastid

Predictor Summary:

nucleus 3
cytosol 1
extracellular 1
golgi 2
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027835.1-P	Field mustard	nucleus	96.29	62.45
CDY65064	Canola	nucleus	98.39	61.55
Os12t0279000-01	Rice	mitochondrion	75.0	59.92
AT1G59760.1	Thale cress	cytosol, nucleus, plastid	93.55	58.7
VIT_06s0009g01750.t01	Wine grape	cytosol	79.19	49.25
KRH46878	Soybean	nucleus	77.9	49.24
PGSC0003DMT400053368	Potato	nucleus	75.16	46.98
Solyc01g103080.2.1	Tomato	nucleus	75.0	46.92
EER87693	Sorghum	cytosol	75.32	46.65
TraesCS7D01G010500.1	Wheat	cytosol	73.87	46.36
Zm00001d045590_P005	Maize	cytosol, nucleus, plastid	74.68	46.3
TraesCS4A01G484300.2	Wheat	cytosol	73.87	46.03
GSMUA_Achr2P17890_001	Banana	cytosol, nucleus, plastid	74.52	45.65
HORVU7Hr1G001080.1	Barley	cytosol, nucleus, plastid	72.9	43.42
TraesCS7A01G010800.1	Wheat	cytosol	73.06	42.54
Bra029783.1-P	Field mustard	cytosol	42.26	26.63
HORVU1Hr1G048420.1	Barley	cytosol	2.58	19.51
Bra018181.1-P	Field mustard	nucleus	31.77	14.69
HORVU1Hr1G018080.31	Barley	cytosol, nucleus, plastid	5.48	11.64
Bra016240.1-P	Field mustard	plastid	21.29	11.32
Bra033025.1-P	Field mustard	nucleus	11.29	6.4
Bra008413.1-P	Field mustard	cytosol	7.58	5.02
Bra020835.1-P	Field mustard	cytosol	16.77	4.98
Bra022718.1-P	Field mustard	cytosol	17.1	4.84
Bra012260.1-P	Field mustard	cytosol	16.94	4.8
Bra029333.1-P	Field mustard	plastid	16.45	4.78
Bra040938.1-P	Field mustard	nucleus	15.16	4.42
Bra011372.1-P	Field mustard	nucleus	15.16	4.09
Bra035425.1-P	Field mustard	nucleus	1.29	2.12

Protein Annotations

Gene3D:1.10.3380.30	Gene3D:1.20.1500.20	MapMan:16.8.1.2.3.1	Gene3D:2.40.30.300	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra035426
EnsemblPlants:Bra035426.1	EnsemblPlants:Bra035426.1-P	ncoils:Coil	InterPro:Helicase_C	InterPro:IPR001650	UniProt:M4F2X6
InterPro:P-loop_NTPase	PFAM:PF00271	PFAM:PF08148	PFAM:PF13234	PFscan:PS51194	PANTHER:PTHR12131
PANTHER:PTHR12131:SF7	SMART:SM00490	SMART:SM01142	SUPFAM:SSF52540	InterPro:Ski2_C	UniParc:UPI00025448E3
InterPro:rRNA_proc-arch_dom	:	:	:	:	:

Description

AT1G59760 (E=0.0) | ATP-dependent RNA helicase, putative

Coordinates

chrA01:-:16389991..16392660

Molecular Weight (calculated)

70543.0 Da

IEP (calculated)

8.436

GRAVY (calculated)

-0.229

Length

620 amino acids

Sequence
(BLAST)

001: MVHVLQVSNI LPILKRGIGV HHSGLLPILK EVIEILFQEG LIKCLFATET FSIGLNMPAK TVVFTNVRKF DGDKFRWLSS GEYIQMSGRA GRRGIDKRGI
101: CILMVDEKME PAVAKSMLKG SADSLNSAFH LSYNMLLNQL RSEDGDPENL LRNSFFQFQA DRAIPDIEKQ IKALQEERDS MVIEEEESLR NYYNLILQYK
201: SLKKDIREIV FSPKYCLPFL LPNRAVCLDC PNDNGEQQSF SIEDQDAWGV IMKFNKVKSL SEDDDNRRPE DANYTVDVLT RCLVSRDGAG KKKIKPVPFK
301: ERGDPVVVSV PLSQIKSLSS AIMNIPKDYS QLEARENALK KVSELLSRHP DGIPLDPEVD MKIRSSSYKK TVRRLEALEN LFEKHKVAKS PLIAQKLKVL
401: HMKEELTAKI KSLKKTVRSS TALAFKDELK ARKRVLRRLG YITSDNVVEL KGKVACEISS AEELTLTELM FSGVFKEAKV EELVSLLSCF VWRERLPDAA
501: KPREELDLLF IQLQDTARRV AEVQLDCKVD IDVESFVHSF RPDIMEAVYA WAKGSKFYEI MEIARVFEGS LIRAIRRMEE VLQQLIVAAK SIGETQLEAK
601: LEEAVSKIKR DIVFAASLYL

Best Arabidopsis Sequence Match ( AT1G59760.1 )
(BLAST)

001: MGSVKRKSVE ESSDSAPPQK VQREDDSTQI INEELVGCVH DVSFPENYVP LAPSVHNKPP AKDFPFTLDS FQSEAIKCLD NGESVMVSAH TSAGKTVVAS
101: YAIAMSLKEN QRVIYTSPIK ALSNQKYRDF KEEFSDVGLM TGDVTIDPNA SCLVMTTEIL RSMQYKGSEI MREVAWIIFD EVHYMRDSER GVVWEESIVM
201: APKNSRFVFL SATVPNAKEF ADWVAKVHQQ PCHIVYTDYR PTPLQHYVFP AGGNGLYLVV DEKSKFHEDS FQKSLNALVP TNESDKKRDN GKFQKGLVIG
301: KLGEESDIFK LVKMIIQRQY DPVILFSFSK KECEALAMQM SKMVLNSDDE KDAVETIFAS AIDMLSDDDK KLPQVSNILP ILKRGIGVHH SGLLPILKEV
401: IEILFQEGLI KCLFATETFS IGLNMPAKTV VFTNVRKFDG DKFRWLSSGE YIQMSGRAGR RGIDKRGICI LMVDEKMEPA VAKSMLKGSA DSLNSAFHLS
501: YNMLLNQLRC EEGDPENLLR NSFFQFQADR AIPDLEKQIK SLEEERDSLV IEEEESLKNY YNLILQYKSL KKDIREIVFT PKYCLPFLLP NRAVCLDCTN
601: DDEEPQSFSI EDQDTWGVIM KFNKVKSLSE DDDSRRPEDA NYTVDVLTRC MVSKDGVGKK KVKAVPIKER GEPVVVTVPL SQIKSLSSAI MNIPKDLVPL
701: EARENALKKV SELLSRHPDG IPLDPEVDMK IKSSSYKKTV RRLEALENLF EKHKIAKSPL ITEKLKVLQM KEELIAKIKS LKKTVRSSTA LAFKDELKAR
801: KRVLRRLGYI TSDNVVELKG KVACEISSAE ELTLTELMFS GIFKDAKVEE LVSLLSCFVW RERLPDAAKP REELDLLFIQ LQDTARRVAE VQLDCKVEID
901: VESFVQSFRP DIMEAVYAWA KGSKFYEVME IARVFEGSLI RAIRRMEEVL QQLIVAAKSI GETQLEAKLE EAVSKIKRDI VFAASLYL

Arabidopsis Description

MTR4DExH-box ATP-dependent RNA helicase DExH9 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIF2]
SUBAcon: [cytosol,nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.