Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra035426.1-P | Field mustard | cytosol, golgi, plastid | 61.55 | 98.39 |
| Bra035425.1-P | Field mustard | nucleus | 36.83 | 96.56 |
| CDY30903 | Canola | nucleus | 95.16 | 95.54 |
| CDY45148 | Canola | endoplasmic reticulum | 59.84 | 95.34 |
| CDY45149 | Canola | nucleus | 35.92 | 94.18 |
| AT1G59760.1 | Thale cress | cytosol, nucleus, plastid | 92.13 | 92.41 |
| CDY33604 | Canola | cytosol | 24.12 | 81.29 |
| VIT_06s0009g01750.t01 | Wine grape | cytosol | 78.61 | 78.13 |
| KRH46878 | Soybean | nucleus | 75.98 | 76.76 |
| Solyc01g103080.2.1 | Tomato | nucleus | 75.48 | 75.48 |
| PGSC0003DMT400053368 | Potato | nucleus | 75.48 | 75.4 |
| Os12t0279000-01 | Rice | mitochondrion | 58.83 | 75.13 |
| TraesCS7D01G010500.1 | Wheat | cytosol | 74.87 | 75.1 |
| EER87693 | Sorghum | cytosol | 75.58 | 74.83 |
| TraesCS4A01G484300.2 | Wheat | cytosol | 74.87 | 74.57 |
| Zm00001d045590_P005 | Maize | cytosol, nucleus, plastid | 74.77 | 74.1 |
| GSMUA_Achr2P17890_001 | Banana | cytosol, nucleus, plastid | 74.77 | 73.22 |
| HORVU1Hr1G048420.1 | Barley | cytosol | 6.05 | 73.17 |
| HORVU7Hr1G001080.1 | Barley | cytosol, nucleus, plastid | 74.17 | 70.61 |
| TraesCS7A01G010800.1 | Wheat | cytosol | 74.37 | 69.2 |
| HORVU1Hr1G018080.31 | Barley | cytosol, nucleus, plastid | 17.46 | 59.25 |
| CDY41593 | Canola | cytosol | 46.82 | 46.82 |
| CDY44724 | Canola | cytosol | 46.62 | 46.76 |
| CDX99082 | Canola | cytosol | 31.79 | 26.36 |
| CDX86107 | Canola | nucleus | 34.51 | 25.43 |
| CDY38782 | Canola | plastid | 23.51 | 20.0 |
| CDY11624 | Canola | plastid | 22.91 | 19.7 |
| CDY56796 | Canola | cytosol | 12.21 | 13.22 |
| CDY49767 | Canola | nucleus | 13.22 | 11.58 |
| CDY03992 | Canola | nucleus | 13.12 | 11.45 |
| CDY22275 | Canola | cytosol, nucleus, plasma membrane | 12.21 | 11.4 |
| CDY47017 | Canola | cytosol | 12.21 | 10.04 |
| CDY48648 | Canola | nucleus | 10.09 | 9.72 |
| CDY51661 | Canola | nucleus | 15.14 | 9.64 |
| CDX76355 | Canola | cytosol | 11.5 | 8.79 |
| CDY04587 | Canola | plastid | 3.13 | 8.47 |
| CDY22556 | Canola | cytosol | 17.36 | 8.18 |
| CDY42855 | Canola | nucleus, plastid | 16.45 | 7.69 |
| CDY51662 | Canola | nucleus | 5.95 | 7.68 |
| CDX75273 | Canola | nucleus | 15.24 | 7.51 |
| CDY23339 | Canola | nucleus | 15.24 | 7.51 |
| CDX68881 | Canola | nucleus | 15.54 | 7.42 |
| CDY48646 | Canola | cytosol | 2.02 | 6.15 |
| CDY01343 | Canola | cytosol | 2.02 | 6.15 |
| CDY31854 | Canola | cytosol | 2.02 | 6.15 |
| CDY28773 | Canola | cytosol | 2.02 | 6.15 |
| CDY47018 | Canola | cytosol | 3.94 | 5.47 |
| CDY31853 | Canola | nucleus | 5.35 | 4.41 |
| CDY52687 | Canola | cytosol, mitochondrion | 3.33 | 3.85 |
| CDY01342 | Canola | cytosol | 3.53 | 3.16 |
| CDX76356 | Canola | nucleus | 0.61 | 1.52 |
| CDX75272 | Canola | nucleus | 0.0 | 0.0 |
| CDX68879 | Canola | cytosol, mitochondrion, nucleus | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.3380.30 | Gene3D:1.20.1500.20 | MapMan:16.8.1.2.3.1 | Gene3D:2.40.30.300 | Gene3D:3.40.50.300 | GO:A0A078JEE8 |
| UniProt:A0A078JEE8 | EnsemblPlants:CDY65064 | ProteinID:CDY65064 | ProteinID:CDY65064.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003724 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0006139 | GO:GO:0006401 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00044117001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF08148 |
| PFAM:PF13234 | PIRSF:PIRSF005198 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR12131 | PANTHER:PTHR12131:SF7 |
| SMART:SM00487 | SMART:SM00490 | SMART:SM01142 | SUPFAM:SSF52540 | InterPro:Ski2-like | InterPro:Ski2_C |
| UniParc:UPI0004EF0D13 | InterPro:rRNA_proc-arch_dom | : | : | : | : |
Description
BnaA01g35820DBnaA01g35820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JEE8]
Coordinates
chrLK034646:+:8179..12948
Molecular Weight (calculated)
112401.0 Da
IEP (calculated)
6.430
GRAVY (calculated)
-0.273
Length
991 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSVKRKSLE ESTDCAPPQK VQREDDSTQI INEELVGCVH DVSFPENYVP TPAQGDNKPP AKEFPFTLDS FQSEAIKCLD NAESVMVSAH TSAGKTVVAS
101: YAIAMSLREN QRVIYTSPIK ALSNQKYRDF KEEFSDVGLM TGDVTIDPNA SCLVMTTEIL RSMQYKGSEI MREVAWIIFD EVHYMRDSER GVVWEESIVM
201: APKNSRFVFL SATVPNAKEF ADWVAKVHKQ PCHIVYTDYR PTPLQHYVFP AGGSGLYLVV DEKAKFHEDS FQKSLNALVP ANDGDKKREN GKSQKGLILG
301: KLGEESDIFK LVKMIIQRQY DPVILFSFSK KECEALAMQM SKMDLNSDDE KDSVETIFTR SFFVDLVSDV TWLLDILVSN ILPILKRGIG VHHSGLLPIL
401: KEVIEILFQE GLIKCLFATE TFSIGLNMPA KTVVFTNVRK FDGDKFRWLS SGEYIQMSGR AGRRGIDKRG ICILMVDGKM EPAVAKSMLK GSADSLNSAF
501: HLSYNMLLNQ LRSEDGDPEN LLRNSFFQFQ ADRAIPDIEK QIKALQEERD SMVIEEEESL RNYYNLILQY KSLKKDIREI VFSPKYCLPF LLPNRAVCLD
601: CPNDNGEQQS FSIEDQDAWG VIMKFNKVKS LYEDDDNRRP EDANYTVDVL TRCLVSRDGA GKKKSKPVPF KERGDPIVVS VPLSQIKSLS SAIMNIPKDY
701: LQLEARENAL KKVSELLSRH PDGIPLDPEV DMKIRNSSYK KTVRRLEALE NLFEKHKVAK SPLIAQKLKV LHMKEELTAK IKSLKKTVRS STALAFKDEL
801: KARKRVLRRL GYITSDNVVE LKGKVACEIS SAEELTLTEL MFSGVFKEAK VEELVSLLSC FVWRERLPDA AKPREELDLL FIQLQDTARR VAEVQLDCKV
901: DIDVESFVHS FRPDIMEAVY AWAKGSKFYE IMEIARVFEG SLIRAIRRME EVLQQLIVAA KSIGETQLEA KLEEAVSKIK RDIVFAASLY L
101: YAIAMSLREN QRVIYTSPIK ALSNQKYRDF KEEFSDVGLM TGDVTIDPNA SCLVMTTEIL RSMQYKGSEI MREVAWIIFD EVHYMRDSER GVVWEESIVM
201: APKNSRFVFL SATVPNAKEF ADWVAKVHKQ PCHIVYTDYR PTPLQHYVFP AGGSGLYLVV DEKAKFHEDS FQKSLNALVP ANDGDKKREN GKSQKGLILG
301: KLGEESDIFK LVKMIIQRQY DPVILFSFSK KECEALAMQM SKMDLNSDDE KDSVETIFTR SFFVDLVSDV TWLLDILVSN ILPILKRGIG VHHSGLLPIL
401: KEVIEILFQE GLIKCLFATE TFSIGLNMPA KTVVFTNVRK FDGDKFRWLS SGEYIQMSGR AGRRGIDKRG ICILMVDGKM EPAVAKSMLK GSADSLNSAF
501: HLSYNMLLNQ LRSEDGDPEN LLRNSFFQFQ ADRAIPDIEK QIKALQEERD SMVIEEEESL RNYYNLILQY KSLKKDIREI VFSPKYCLPF LLPNRAVCLD
601: CPNDNGEQQS FSIEDQDAWG VIMKFNKVKS LYEDDDNRRP EDANYTVDVL TRCLVSRDGA GKKKSKPVPF KERGDPIVVS VPLSQIKSLS SAIMNIPKDY
701: LQLEARENAL KKVSELLSRH PDGIPLDPEV DMKIRNSSYK KTVRRLEALE NLFEKHKVAK SPLIAQKLKV LHMKEELTAK IKSLKKTVRS STALAFKDEL
801: KARKRVLRRL GYITSDNVVE LKGKVACEIS SAEELTLTEL MFSGVFKEAK VEELVSLLSC FVWRERLPDA AKPREELDLL FIQLQDTARR VAEVQLDCKV
901: DIDVESFVHS FRPDIMEAVY AWAKGSKFYE IMEIARVFEG SLIRAIRRME EVLQQLIVAA KSIGETQLEA KLEEAVSKIK RDIVFAASLY L
001: MGSVKRKSVE ESSDSAPPQK VQREDDSTQI INEELVGCVH DVSFPENYVP LAPSVHNKPP AKDFPFTLDS FQSEAIKCLD NGESVMVSAH TSAGKTVVAS
101: YAIAMSLKEN QRVIYTSPIK ALSNQKYRDF KEEFSDVGLM TGDVTIDPNA SCLVMTTEIL RSMQYKGSEI MREVAWIIFD EVHYMRDSER GVVWEESIVM
201: APKNSRFVFL SATVPNAKEF ADWVAKVHQQ PCHIVYTDYR PTPLQHYVFP AGGNGLYLVV DEKSKFHEDS FQKSLNALVP TNESDKKRDN GKFQKGLVIG
301: KLGEESDIFK LVKMIIQRQY DPVILFSFSK KECEALAMQM SKMVLNSDDE KDAVETIFAS AIDMLSDDDK KLPQVSNILP ILKRGIGVHH SGLLPILKEV
401: IEILFQEGLI KCLFATETFS IGLNMPAKTV VFTNVRKFDG DKFRWLSSGE YIQMSGRAGR RGIDKRGICI LMVDEKMEPA VAKSMLKGSA DSLNSAFHLS
501: YNMLLNQLRC EEGDPENLLR NSFFQFQADR AIPDLEKQIK SLEEERDSLV IEEEESLKNY YNLILQYKSL KKDIREIVFT PKYCLPFLLP NRAVCLDCTN
601: DDEEPQSFSI EDQDTWGVIM KFNKVKSLSE DDDSRRPEDA NYTVDVLTRC MVSKDGVGKK KVKAVPIKER GEPVVVTVPL SQIKSLSSAI MNIPKDLVPL
701: EARENALKKV SELLSRHPDG IPLDPEVDMK IKSSSYKKTV RRLEALENLF EKHKIAKSPL ITEKLKVLQM KEELIAKIKS LKKTVRSSTA LAFKDELKAR
801: KRVLRRLGYI TSDNVVELKG KVACEISSAE ELTLTELMFS GIFKDAKVEE LVSLLSCFVW RERLPDAAKP REELDLLFIQ LQDTARRVAE VQLDCKVEID
901: VESFVQSFRP DIMEAVYAWA KGSKFYEVME IARVFEGSLI RAIRRMEEVL QQLIVAAKSI GETQLEAKLE EAVSKIKRDI VFAASLYL
101: YAIAMSLKEN QRVIYTSPIK ALSNQKYRDF KEEFSDVGLM TGDVTIDPNA SCLVMTTEIL RSMQYKGSEI MREVAWIIFD EVHYMRDSER GVVWEESIVM
201: APKNSRFVFL SATVPNAKEF ADWVAKVHQQ PCHIVYTDYR PTPLQHYVFP AGGNGLYLVV DEKSKFHEDS FQKSLNALVP TNESDKKRDN GKFQKGLVIG
301: KLGEESDIFK LVKMIIQRQY DPVILFSFSK KECEALAMQM SKMVLNSDDE KDAVETIFAS AIDMLSDDDK KLPQVSNILP ILKRGIGVHH SGLLPILKEV
401: IEILFQEGLI KCLFATETFS IGLNMPAKTV VFTNVRKFDG DKFRWLSSGE YIQMSGRAGR RGIDKRGICI LMVDEKMEPA VAKSMLKGSA DSLNSAFHLS
501: YNMLLNQLRC EEGDPENLLR NSFFQFQADR AIPDLEKQIK SLEEERDSLV IEEEESLKNY YNLILQYKSL KKDIREIVFT PKYCLPFLLP NRAVCLDCTN
601: DDEEPQSFSI EDQDTWGVIM KFNKVKSLSE DDDSRRPEDA NYTVDVLTRC MVSKDGVGKK KVKAVPIKER GEPVVVTVPL SQIKSLSSAI MNIPKDLVPL
701: EARENALKKV SELLSRHPDG IPLDPEVDMK IKSSSYKKTV RRLEALENLF EKHKIAKSPL ITEKLKVLQM KEELIAKIKS LKKTVRSSTA LAFKDELKAR
801: KRVLRRLGYI TSDNVVELKG KVACEISSAE ELTLTELMFS GIFKDAKVEE LVSLLSCFVW RERLPDAAKP REELDLLFIQ LQDTARRVAE VQLDCKVEID
901: VESFVQSFRP DIMEAVYAWA KGSKFYEVME IARVFEGSLI RAIRRMEEVL QQLIVAAKSI GETQLEAKLE EAVSKIKRDI VFAASLYL
Arabidopsis Description
MTR4DExH-box ATP-dependent RNA helicase DExH9 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIF2]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.