CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45148	Canola	endoplasmic reticulum	78.57	37.14
Bra027835.1-P	Field mustard	nucleus	79.25	24.37
CDY65064	Canola	nucleus	81.29	24.12
CDY30903	Canola	nucleus	78.91	23.51
AT1G59760.1	Thale cress	cytosol, nucleus, plastid	77.21	22.98
Os12t0279000-01	Rice	mitochondrion	58.84	22.29
VIT_06s0009g01750.t01	Wine grape	cytosol	61.56	18.15
KRH46878	Soybean	nucleus	60.2	18.04
PGSC0003DMT400053368	Potato	nucleus	58.84	17.44
Solyc01g103080.2.1	Tomato	nucleus	58.5	17.36
EER87693	Sorghum	cytosol	57.48	16.88
TraesCS7D01G010500.1	Wheat	cytosol	56.46	16.8
Zm00001d045590_P005	Maize	cytosol, nucleus, plastid	57.14	16.8
GSMUA_Achr2P17890_001	Banana	cytosol, nucleus, plastid	57.82	16.8
TraesCS4A01G484300.2	Wheat	cytosol	56.46	16.68
HORVU7Hr1G001080.1	Barley	cytosol, nucleus, plastid	56.46	15.95
TraesCS7A01G010800.1	Wheat	cytosol	56.8	15.68
CDY44724	Canola	cytosol	28.57	8.5
CDY41593	Canola	cytosol	28.57	8.48
HORVU1Hr1G018080.31	Barley	cytosol, nucleus, plastid	6.46	6.51
CDX99082	Canola	cytosol	24.49	6.03
CDY01343	Canola	cytosol	6.46	5.85
CDY48646	Canola	cytosol	6.46	5.85
CDY28773	Canola	cytosol	6.46	5.85
CDY31854	Canola	cytosol	6.46	5.85
CDX86107	Canola	nucleus	24.83	5.43
CDY38782	Canola	plastid	14.97	3.78
CDY47018	Canola	cytosol	8.16	3.37
CDY11624	Canola	plastid	12.93	3.3
CDY51661	Canola	nucleus	10.88	2.06
CDY04587	Canola	plastid	2.38	1.91
CDY52687	Canola	cytosol, mitochondrion	4.76	1.63
CDX76355	Canola	cytosol	7.14	1.62
CDY23339	Canola	nucleus	10.88	1.59
CDY22556	Canola	cytosol	11.22	1.57
CDX68881	Canola	nucleus	10.54	1.49
CDX75273	Canola	nucleus	10.2	1.49
CDY42855	Canola	nucleus, plastid	9.86	1.37
CDY49767	Canola	nucleus	4.76	1.24
CDY03992	Canola	nucleus	4.76	1.23
CDY22275	Canola	cytosol, nucleus, plasma membrane	4.42	1.23
CDY47017	Canola	cytosol	2.72	0.66
CDY48648	Canola	nucleus	2.04	0.58
CDY56796	Canola	cytosol	1.7	0.55
CDY45149	Canola	nucleus	0.34	0.26
CDY31853	Canola	nucleus	0.68	0.17
CDY51662	Canola	nucleus	0.0	0.0
HORVU1Hr1G048420.1	Barley	cytosol	0.0	0.0
CDY01342	Canola	cytosol	0.0	0.0
CDX76356	Canola	nucleus	0.0	0.0
CDX75272	Canola	nucleus	0.0	0.0
CDX68879	Canola	cytosol, mitochondrion, nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:CDY33604	EnsemblPlantsGene:GSBRNA2T00054909001	Gene3D:1.10.3380.30	InterPro:Ski2_C	InterPro:rRNA_proc-arch_dom	PANTHER:PTHR12131
PANTHER:PTHR12131:SF7	PFAM:PF08148	PFAM:PF13234	ProteinID:CDY33604	ProteinID:CDY33604.1	SMART:SM01142
UniParc:UPI0004EF197F	UniProt:A0A078H801	MapMan:35.1	:	:	:

Description

BnaC01g28350DBnaC01g28350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H801]

Coordinates

chrLK032318:-:26513..27572

Molecular Weight (calculated)

33892.5 Da

IEP (calculated)

5.536

GRAVY (calculated)

0.056

Length

294 amino acids

Sequence
(BLAST)

001: MVIEEEESLR NYYNLILQYK SLKEDIREIV FSPKYCLPFL LPNRAVCLDC PNDNGEQQSF SIEDQDAWGV IMKFNKVKSL SVGKVACEIS SAEELTSTEL
101: MFSGVFKEAK VEELVSLLSC FLWRERLPDA AKPREELDLL FIQLLDTARR VAEVQLDCKV DIDVESFVHS FRPDIMEAVY AWAKGSKFYE IMEIARVFEG
201: SLIRAIRRME EVLQQLIVAA KSIGETQLEA KLEEAVSKIK RHCVRCISLL VMAIVSISLA PLFTPKNRQV LFVRHSLFLR LMFAKEIHKP RDIF

Best Arabidopsis Sequence Match ( AT1G59760.1 )
(BLAST)

001: MGSVKRKSVE ESSDSAPPQK VQREDDSTQI INEELVGCVH DVSFPENYVP LAPSVHNKPP AKDFPFTLDS FQSEAIKCLD NGESVMVSAH TSAGKTVVAS
101: YAIAMSLKEN QRVIYTSPIK ALSNQKYRDF KEEFSDVGLM TGDVTIDPNA SCLVMTTEIL RSMQYKGSEI MREVAWIIFD EVHYMRDSER GVVWEESIVM
201: APKNSRFVFL SATVPNAKEF ADWVAKVHQQ PCHIVYTDYR PTPLQHYVFP AGGNGLYLVV DEKSKFHEDS FQKSLNALVP TNESDKKRDN GKFQKGLVIG
301: KLGEESDIFK LVKMIIQRQY DPVILFSFSK KECEALAMQM SKMVLNSDDE KDAVETIFAS AIDMLSDDDK KLPQVSNILP ILKRGIGVHH SGLLPILKEV
401: IEILFQEGLI KCLFATETFS IGLNMPAKTV VFTNVRKFDG DKFRWLSSGE YIQMSGRAGR RGIDKRGICI LMVDEKMEPA VAKSMLKGSA DSLNSAFHLS
501: YNMLLNQLRC EEGDPENLLR NSFFQFQADR AIPDLEKQIK SLEEERDSLV IEEEESLKNY YNLILQYKSL KKDIREIVFT PKYCLPFLLP NRAVCLDCTN
601: DDEEPQSFSI EDQDTWGVIM KFNKVKSLSE DDDSRRPEDA NYTVDVLTRC MVSKDGVGKK KVKAVPIKER GEPVVVTVPL SQIKSLSSAI MNIPKDLVPL
701: EARENALKKV SELLSRHPDG IPLDPEVDMK IKSSSYKKTV RRLEALENLF EKHKIAKSPL ITEKLKVLQM KEELIAKIKS LKKTVRSSTA LAFKDELKAR
801: KRVLRRLGYI TSDNVVELKG KVACEISSAE ELTLTELMFS GIFKDAKVEE LVSLLSCFVW RERLPDAAKP REELDLLFIQ LQDTARRVAE VQLDCKVEID
901: VESFVQSFRP DIMEAVYAWA KGSKFYEVME IARVFEGSLI RAIRRMEEVL QQLIVAAKSI GETQLEAKLE EAVSKIKRDI VFAASLYL

Arabidopsis Description

MTR4DExH-box ATP-dependent RNA helicase DExH9 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIF2]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.