Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra033025.1-P | Field mustard | nucleus | 95.84 | 99.09 |
| CDY03992 | Canola | nucleus | 97.7 | 97.36 |
| AT3G27730.2 | Thale cress | nucleus | 88.51 | 87.58 |
| PGSC0003DMT400001251 | Potato | nucleus | 18.48 | 75.18 |
| Os02t0617500-01 | Rice | cytosol | 40.41 | 73.35 |
| KRH07179 | Soybean | endoplasmic reticulum, plastid | 64.19 | 61.01 |
| Solyc02g086580.2.1 | Tomato | cytosol | 62.78 | 58.97 |
| GSMUA_Achr1P12000_001 | Banana | cytosol, nucleus, plastid | 57.38 | 58.79 |
| VIT_14s0066g00880.t01 | Wine grape | nucleus | 66.14 | 58.67 |
| HORVU4Hr1G049830.57 | Barley | nucleus | 55.97 | 56.42 |
| TraesCS4D01G171000.1 | Wheat | nucleus | 56.06 | 51.59 |
| TraesCS4B01G168700.1 | Wheat | nucleus | 57.47 | 50.74 |
| TraesCS4A01G136200.1 | Wheat | nucleus | 57.38 | 50.66 |
| Zm00001d051111_P001 | Maize | nucleus | 57.03 | 49.88 |
| OQU85316 | Sorghum | nucleus | 57.03 | 49.81 |
| PGSC0003DMT400001255 | Potato | cytosol, mitochondrion | 29.35 | 45.11 |
| CDY56796 | Canola | cytosol | 17.15 | 21.2 |
| CDY45149 | Canola | nucleus | 6.1 | 18.25 |
| CDY48648 | Canola | nucleus | 15.03 | 16.52 |
| CDY47017 | Canola | cytosol | 17.24 | 16.18 |
| CDY22275 | Canola | cytosol, nucleus, plasma membrane | 14.94 | 15.93 |
| CDX76355 | Canola | cytosol | 17.24 | 15.03 |
| CDY30903 | Canola | nucleus | 11.67 | 13.37 |
| CDY65064 | Canola | nucleus | 11.58 | 13.22 |
| CDY51661 | Canola | nucleus | 17.59 | 12.79 |
| CDY44724 | Canola | cytosol | 10.79 | 12.35 |
| CDY41593 | Canola | cytosol | 10.79 | 12.31 |
| CDY11624 | Canola | plastid | 12.29 | 12.07 |
| CDY38782 | Canola | plastid | 12.29 | 11.93 |
| CDY22556 | Canola | cytosol | 21.57 | 11.6 |
| CDX99082 | Canola | cytosol | 12.02 | 11.38 |
| CDX86107 | Canola | nucleus | 13.0 | 10.93 |
| CDY42855 | Canola | nucleus, plastid | 20.42 | 10.89 |
| CDY45148 | Canola | endoplasmic reticulum | 5.92 | 10.77 |
| CDX75273 | Canola | nucleus | 17.77 | 10.0 |
| CDY23339 | Canola | nucleus | 17.59 | 9.9 |
| CDX68881 | Canola | nucleus | 17.86 | 9.73 |
| CDY51662 | Canola | nucleus | 6.01 | 8.85 |
| CDY04587 | Canola | plastid | 2.03 | 6.28 |
| CDY31853 | Canola | nucleus | 6.01 | 5.66 |
| CDY52687 | Canola | cytosol, mitochondrion | 4.07 | 5.36 |
| CDY33604 | Canola | cytosol | 1.24 | 4.76 |
| CDY01342 | Canola | cytosol | 3.89 | 3.97 |
| CDY47018 | Canola | cytosol | 2.03 | 3.23 |
| CDY01343 | Canola | cytosol | 0.88 | 3.08 |
| CDY28773 | Canola | cytosol | 0.88 | 3.08 |
| CDY48646 | Canola | cytosol | 0.88 | 3.08 |
| CDY31854 | Canola | cytosol | 0.88 | 3.08 |
| CDX76356 | Canola | nucleus | 0.27 | 0.76 |
| CDX75272 | Canola | nucleus | 0.0 | 0.0 |
| CDX68879 | Canola | cytosol, mitochondrion, nucleus | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.10.2530 | Gene3D:1.10.150.20 | Gene3D:1.10.3380.10 | MapMan:13.3.6.5.1.1 | Gene3D:3.40.50.300 | GO:A0A078IIK6 |
| UniProt:A0A078IIK6 | EnsemblPlants:CDY49767 | ProteinID:CDY49767 | ProteinID:CDY49767.1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005524 | EnsemblPlantsGene:GSBRNA2T00093769001 | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 |
| PFAM:PF02889 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF388 | SMART:SM00487 |
| SMART:SM00490 | SMART:SM00973 | SUPFAM:SSF158702 | SUPFAM:SSF52540 | InterPro:Sec63-dom | UniParc:UPI0004EECE0D |
| SEG:seg | : | : | : | : | : |
Description
BnaA02g29040DBnaA02g29040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IIK6]
Coordinates
chrLK032857:+:76401..82259
Molecular Weight (calculated)
128119.0 Da
IEP (calculated)
8.647
GRAVY (calculated)
-0.409
Length
1131 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDTHTLKSVS DLPPNFRSAF TFRYFNSLQS ECFPLCFHSD INMVISAPTG SGKTVLFELC ILRLLSKSIS SDGRFLHAKG ALKTVYISPS KALVQEKLRD
0101: WNQKFNSWGI SCLELTGDNE TYSSKNIQDA DIILTTPEKF DAVSRYRVSS GGLGFFSDIA LVLIDEVHLL NDPRGAALEA IVSRIKILSS NHELRLSTLA
0201: SVRLLAVSAT IPNIEDLAEW LKVPTAGIKR FGEEMRPVKL TTKVFGYAAA KNDFLFEKRL QNYIYDMLMQ YSKGKSALVF CSTRKGAQEA AQKLAQTAMT
0301: YGYSNPFVKS REQLERLREA SPMCSDKQMQ SYILQGVGYH NGGLCQKDRS LVEGLFLSGD IQVLCTTNTL AHGINLPAHT VVIKSTQHFN KEKGHYMEYD
0401: RSTLLQMCGR AGRPPFDDTG LVIIMTRRET VHLYENLLNG CEVVESQLLP CLIEHLTAEI VQLTVTDVTR AIEWMKCSYL YVRMKKARSH AISNPENYAI
0501: KKGIPKDRVE KHLQELCLQK INELSSYQMI WTDTDGFVLK PEEPGRLMTK YYLKFDTMKY IINAPTGYSL DEALHIVCRA EEISWIQLRR NEKKTLNDVN
0601: ADKEGRLRFH INDNKGKRKK RIQTREEKLF VLANDWLTGD PSVHDLSMTQ DANSLCSNGS RIARCMKEYF IYKKNYKGTI SSTLLAKSLF QKLWDDSPYL
0701: LKQLPGIGMV TAKALHSMGV RSFEALAEAD PRRIEIVTGR KYPFGNHIKE SLSSLPPKVE IKVEEVESQK QGVSKLAVTL TRLSQPLVST KRHYADMIVG
0801: SEEENHIHFH EKIRMDDFSS PYSVTILVER PQQAKVTVKA DLIFEEYIGI DLHETLLLKK ANNNTVNYKS ENRLPHYYPP MVDVCVVDDN SPVKSGPPNR
0901: KNQKDEMPSF KLIDEDSEEE KEPYLTMEED DCVILNEHTV FDHIRQKAKC FPSLITLNPT SSARLKRKSL MKNSPELDPL FQYDSVFRST TTTKDIKQTA
1001: QKITTPVYAS NGKTERPFSD ETVFNYIRKR SKNSPILATS TVEDHIAISS QERTNTKTSP YTSYRLLPSP SAKIPSIKSD APAEMLSFDI SMANSSNTNL
1101: EEKKKGSCSQ LAGNSNGSDH FLGFKSIFSF L
0101: WNQKFNSWGI SCLELTGDNE TYSSKNIQDA DIILTTPEKF DAVSRYRVSS GGLGFFSDIA LVLIDEVHLL NDPRGAALEA IVSRIKILSS NHELRLSTLA
0201: SVRLLAVSAT IPNIEDLAEW LKVPTAGIKR FGEEMRPVKL TTKVFGYAAA KNDFLFEKRL QNYIYDMLMQ YSKGKSALVF CSTRKGAQEA AQKLAQTAMT
0301: YGYSNPFVKS REQLERLREA SPMCSDKQMQ SYILQGVGYH NGGLCQKDRS LVEGLFLSGD IQVLCTTNTL AHGINLPAHT VVIKSTQHFN KEKGHYMEYD
0401: RSTLLQMCGR AGRPPFDDTG LVIIMTRRET VHLYENLLNG CEVVESQLLP CLIEHLTAEI VQLTVTDVTR AIEWMKCSYL YVRMKKARSH AISNPENYAI
0501: KKGIPKDRVE KHLQELCLQK INELSSYQMI WTDTDGFVLK PEEPGRLMTK YYLKFDTMKY IINAPTGYSL DEALHIVCRA EEISWIQLRR NEKKTLNDVN
0601: ADKEGRLRFH INDNKGKRKK RIQTREEKLF VLANDWLTGD PSVHDLSMTQ DANSLCSNGS RIARCMKEYF IYKKNYKGTI SSTLLAKSLF QKLWDDSPYL
0701: LKQLPGIGMV TAKALHSMGV RSFEALAEAD PRRIEIVTGR KYPFGNHIKE SLSSLPPKVE IKVEEVESQK QGVSKLAVTL TRLSQPLVST KRHYADMIVG
0801: SEEENHIHFH EKIRMDDFSS PYSVTILVER PQQAKVTVKA DLIFEEYIGI DLHETLLLKK ANNNTVNYKS ENRLPHYYPP MVDVCVVDDN SPVKSGPPNR
0901: KNQKDEMPSF KLIDEDSEEE KEPYLTMEED DCVILNEHTV FDHIRQKAKC FPSLITLNPT SSARLKRKSL MKNSPELDPL FQYDSVFRST TTTKDIKQTA
1001: QKITTPVYAS NGKTERPFSD ETVFNYIRKR SKNSPILATS TVEDHIAISS QERTNTKTSP YTSYRLLPSP SAKIPSIKSD APAEMLSFDI SMANSSNTNL
1101: EEKKKGSCSQ LAGNSNGSDH FLGFKSIFSF L
0001: MDTHTLKSVS DLPGNFRSAF SFRYFNSLQS ECFPLCFHSD INMIISAPTG SGKTVLFELC ILRLFSKSIS KEGSFLHAKG ALKTVYISPS KALVQEKLRD
0101: WNQKFNSWGI SCLELTGDNE TYSTKNIQDA DIILTTPEKF DAVSRYRVTS GGLGFFSDIA LVLIDEVHLL NDPRGAALEA IVSRLKILSS NHELRSSTLA
0201: SVRLLAVSAT IPNIEDLAEW LKVPTAGIKR FGEEMRPVKL TTKVFGYAAA KNDFLFEKRL QNYIYDILMQ YSKGKSALVF CSTRKGAQEA AQKLAQTAMT
0301: YGYSNPFIKS REQLERLREA SPMCSDKQMQ SYILQGVGYH NGGLCQKDRS LVEGLFLNGD IQVICTTNTL AHGINLPAHT VVIKSTQHFN KEKGHYMEYD
0401: RSTLLQMSGR AGRPPFDDTG MVIIMTRRET VHLYENLLNG CEVVESQLLP CLIEHLTAEI VQLTISDITR AIEWMKCSYL YVRMKKNPEN YAIKKGIPKD
0501: RVEKHLQELC LQKINELSQY QMIWTDTDGF VLKPEEPGRL MTKYYLKFET MKYIINTPTS YSLDEALHIV CHAEEISWIQ LRRNEKKTLN DVNADKEGRL
0601: RFHINDNKGK RKKRIQTREE KLFVLANDWL TGDPSVHDLS MTQDANSICS NGSRIARCMK EYFIYKKNYK GTLSSTLLAK SLYQKLWDDS PYLLKQLPGI
0701: GMVTAKALHS MGVRSFEALA EADPRRIEIV TGRKYPFGNT IKESLSSLPP KVEIKVEEVD CQKQGISKLA VTLSRVSQPL QSTKRHYADL IVGSEEENLI
0801: HFHEKIRMED FSSPYSVTVL LERPHQQTKV TVKADLIFEE YIGIDLHETL LLKKANNNKV NYKSENRMPQ YYPPMASACI ADDDNPVTSG PSNRKDKKDD
0901: MPSFKLIDDD SEEEKEPYVT MEEDDCVIIN EHTVFDHIRE KAKCFPSLNP LNPTSSPASG KSILKRKSLV ENNSPELDPL FQYDSVFDLP TNTKDIKQSA
1001: QQITSPGYAS FAEKTETERP FSDETIFNYI RKRSKNSPAL ATSKIENPIT ISSQEGRNAE ISPYRTYGLL VSPATKIPRI TSDAPSEILS FDISMVKRSD
1101: TSLEQTKGFC STLAGKSNVS DSFLGFKSIF SFL
0101: WNQKFNSWGI SCLELTGDNE TYSTKNIQDA DIILTTPEKF DAVSRYRVTS GGLGFFSDIA LVLIDEVHLL NDPRGAALEA IVSRLKILSS NHELRSSTLA
0201: SVRLLAVSAT IPNIEDLAEW LKVPTAGIKR FGEEMRPVKL TTKVFGYAAA KNDFLFEKRL QNYIYDILMQ YSKGKSALVF CSTRKGAQEA AQKLAQTAMT
0301: YGYSNPFIKS REQLERLREA SPMCSDKQMQ SYILQGVGYH NGGLCQKDRS LVEGLFLNGD IQVICTTNTL AHGINLPAHT VVIKSTQHFN KEKGHYMEYD
0401: RSTLLQMSGR AGRPPFDDTG MVIIMTRRET VHLYENLLNG CEVVESQLLP CLIEHLTAEI VQLTISDITR AIEWMKCSYL YVRMKKNPEN YAIKKGIPKD
0501: RVEKHLQELC LQKINELSQY QMIWTDTDGF VLKPEEPGRL MTKYYLKFET MKYIINTPTS YSLDEALHIV CHAEEISWIQ LRRNEKKTLN DVNADKEGRL
0601: RFHINDNKGK RKKRIQTREE KLFVLANDWL TGDPSVHDLS MTQDANSICS NGSRIARCMK EYFIYKKNYK GTLSSTLLAK SLYQKLWDDS PYLLKQLPGI
0701: GMVTAKALHS MGVRSFEALA EADPRRIEIV TGRKYPFGNT IKESLSSLPP KVEIKVEEVD CQKQGISKLA VTLSRVSQPL QSTKRHYADL IVGSEEENLI
0801: HFHEKIRMED FSSPYSVTVL LERPHQQTKV TVKADLIFEE YIGIDLHETL LLKKANNNKV NYKSENRMPQ YYPPMASACI ADDDNPVTSG PSNRKDKKDD
0901: MPSFKLIDDD SEEEKEPYVT MEEDDCVIIN EHTVFDHIRE KAKCFPSLNP LNPTSSPASG KSILKRKSLV ENNSPELDPL FQYDSVFDLP TNTKDIKQSA
1001: QQITSPGYAS FAEKTETERP FSDETIFNYI RKRSKNSPAL ATSKIENPIT ISSQEGRNAE ISPYRTYGLL VSPATKIPRI TSDAPSEILS FDISMVKRSD
1101: TSLEQTKGFC STLAGKSNVS DSFLGFKSIF SFL
Arabidopsis Description
RCKDNA helicase ROCK-N-ROLLERS [Source:UniProtKB/TrEMBL;Acc:A0A1I9LN50]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.