Factsheet for Bra033025.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49767	Canola	nucleus	99.09	95.84
AT3G27730.2	Thale cress	nucleus	88.67	84.86
PGSC0003DMT400001251	Potato	nucleus	19.01	74.82
Os02t0617500-01	Rice	cytosol	39.58	69.5
KRH07179	Soybean	endoplasmic reticulum, plastid	64.08	58.91
Solyc02g086580.2.1	Tomato	cytosol	62.71	56.98
GSMUA_Achr1P12000_001	Banana	cytosol, nucleus, plastid	57.22	56.7
VIT_14s0066g00880.t01	Wine grape	nucleus	65.72	56.39
HORVU4Hr1G049830.57	Barley	nucleus	55.67	54.28
TraesCS4D01G171000.1	Wheat	nucleus	55.85	49.72
TraesCS4B01G168700.1	Wheat	nucleus	57.31	48.95
TraesCS4A01G136200.1	Wheat	nucleus	57.22	48.87
Zm00001d051111_P001	Maize	nucleus	56.76	48.03
OQU85316	Sorghum	nucleus	56.76	47.95
PGSC0003DMT400001255	Potato	cytosol, mitochondrion	29.98	44.57
Bra008413.1-P	Field mustard	cytosol	16.64	19.44
Bra035425.1-P	Field mustard	nucleus	5.94	17.2
Bra027835.1-P	Field mustard	nucleus	11.7	13.39
Bra029783.1-P	Field mustard	cytosol	10.79	11.99
Bra020835.1-P	Field mustard	cytosol	21.85	11.45
Bra035426.1-P	Field mustard	cytosol, golgi, plastid	6.4	11.29
Bra016240.1-P	Field mustard	plastid	11.88	11.15
Bra012260.1-P	Field mustard	cytosol	22.03	11.02
Bra022718.1-P	Field mustard	cytosol	22.03	11.01
Bra018181.1-P	Field mustard	nucleus	13.07	10.66
Bra029333.1-P	Field mustard	plastid	20.29	10.41
Bra040938.1-P	Field mustard	nucleus	18.1	9.31
Bra011372.1-P	Field mustard	nucleus	17.92	8.53

Protein Annotations

Gene3D:1.10.10.2530	Gene3D:1.10.150.20	Gene3D:1.10.3380.10	MapMan:13.3.6.5.1.1	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra033025
EnsemblPlants:Bra033025.1	EnsemblPlants:Bra033025.1-P	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
UniProt:M4EW42	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF02889	PFscan:PS51192
PFscan:PS51194	PANTHER:PTHR24031	PANTHER:PTHR24031:SF388	SMART:SM00487	SMART:SM00490	SMART:SM00973
SUPFAM:SSF158702	SUPFAM:SSF52540	InterPro:Sec63-dom	UniParc:UPI000254720B	SEG:seg	:

Description

AT3G27730 (E=0.0) RCK, MER3 | RCK (ROCK-N-ROLLERS); ATP binding / ATP-dependent helicase/ DNA helicase

Coordinates

chrA02:+:21845512..21851377

Molecular Weight (calculated)

123594.0 Da

IEP (calculated)

8.140

GRAVY (calculated)

-0.401

Length

1094 amino acids

Sequence
(BLAST)

0001: MDTHTLKSVS DLPPNFRSAF TFRYFNSLQS ECFPLCFHSD INMVISAPTG SGKTVLFELC ILRLLSKSIS SDGRFLHAKG ALKTVYISPS KALVQEKLRD
0101: WNQKFNSWGI SCLELTGDNE TYSSKNIQDA DIILTTPEKF DAVSRYRVSS GGLGFFSDIA LVLIDEVHLL NDPRGAALEA IVSRIKILSS NHELRLSTLA
0201: SVRLLAVSAT IPNIEDLAEW LKVPTAGIKR FGEEMRPVKL TTKVFGYAAA KNDFLFEKGA QEAAQKLAQT AMTYGYSNPF VKSREQLERL REASPMCSDK
0301: QMQSYILQGV GYHNGGLCQK DRSLVEGLFL SGDIQVLCTT NTLAHGINLP AHTVVIKSTQ HFNKEKGHYM EYDRSTLLQM CGRAGRPPFD DTGLVIIMTR
0401: RETVHLYENL LNGCEVVESQ LLPCLIEHLT AEIVQLTVTD VTRAIEWMKC SYFSFGQNPE NYAIKKGIPK DRVEKHLQEL CLQKINELSS YQMIWTDTDG
0501: FVLKPEEPGR LMTKYYLKFD TMKYIINAPT GYSLDEALHI VCRAEEISWI QLRRNEKKTL NDVNADKEGR LRFHINDNKG KRKKRIQTRE EKLFVLANDW
0601: LTGDPSVHDL SMTQDANSLC SNGSRIARCM KEYFIYKKNY KGTISSTLLA KSLFQKLWDD SPYLLKQLPG IGMVTAKALH SMGVRSFEAL AEADPRRIEI
0701: VTGRKYPFGN HIKESLSSLP PKVEIKVEEV ESQKQGVSKL AVTLTRLSQP LVSTKRHYAD MIVGSEEENH IHFHEKIRMD DFSSPYSVTI LVERPQQAKV
0801: TVKADLIFEE YIGIDLHETL LLKKANNNTV NYKSENRLPH YYPPMVDVCV VDDNSPVKSG PPNRKNQKDE MPSFKLIDED SEEEKEPYLT MEEDDCVILN
0901: EHTVFDHIRQ KAKCFPSLIT LNPTSSATLK RKSLMKNSPE LDPLFQYDSV FRSTTTTKDI KQTAQKITTP VYASNGKTER PFSDETVFNY IRKRSKNSPI
1001: LATSTVEDHI AISSQERRNT KTSPYTSYGL LPSPAKIPSI KSDAPAEMLS FDISMANSSN TNLEEKKKGS CSQLAGKSNG SDSFLGFKSI FSFL

Best Arabidopsis Sequence Match ( AT3G27730.1 )
(BLAST)

0001: MDTHTLKSVS DLPGNFRSAF SFRYFNSLQS ECFPLCFHSD INMIISAPTG SGKTVLFELC ILRLFSKSIS KEGSFLHAKG ALKTVYISPS KALVQEKLRD
0101: WNQKFNSWGI SCLELTGDNE TYSTKNIQDA DIILTTPEKF DAVSRYRVTS GGLGFFSDIA LVLIDEVHLL NDPRGAALEA IVSRLKILSS NHELRSSTLA
0201: SVRLLAVSAT IPNIEDLAEW LKVPTAGIKR FGEEMRPVKL TTKVFGYAAA KNDFLFEKRL QNYIYDILMQ YSKGKSALVF CSTRKGAQEA AQKLAQTAMT
0301: YGYSNPFIKS REQLERLREA SPMCSDKQMQ SYILQGVGYH NGGLCQKDRS LVEGLFLNGD IQVICTTNTL AHGINLPAHT VVIKSTQHFN KEKGHYMEYD
0401: RSTLLQMSGR AGRPPFDDTG MVIIMTRRET VHLYENLLNG CEVVESQLLP CLIEHLTAEI VQLTISDITR AIEWMKCSYL YVRMKKNPEN YAIKKGIPKD
0501: RVEKHLQELC LQKINELSQY QMIWTDTDGF VLKPEEPGRL MTKYYLKFET MKYIINTPTS YSLDEALHIV CHAEEISWIQ LRRNEKKTLN DVNADKEGRL
0601: RFHINDNKGK RKKRIQTREE KLFVLANDWL TGDPSVHDLS MTQDANSICS NGSRIARCMK EYFIYKKNYK GTLSSTLLAK SLYQKLWDDS PYLLKQLPGI
0701: GMVTAKALHS MGVRSFEALA EADPRRIEIV TGRKYPFGNT IKESLSSLPP KVEIKVEEVD CQKQGISKLA VTLSRVSQPL QSTKRHYADL IVGSEEENLI
0801: HFHEKIRMED FSSPYSVTVL LERPHQQTKV TVKADLIFEE YIGIDLHETL LLKKANNNKV NYKSENRMPQ YYPPMASACI ADDDNPVTSG PSNRKDKKDD
0901: MPSFKLIDDD SEEEKEPYVT MEEDDCVIIN EHTVFDHIRE KAKCFPSLNP LNPTSSPASG KSILKRKSLV ENNSPELDPL FQYDSVFDLP TNTKDIKQSA
1001: QQITSPGYAS FAEKTETERP FSDETIFNYI RKRSKNSPAL ATSKIENPIT ISSQEGRNAE ISPYRTYGLL VSPATKIPRI TSDAPSEILS FDISMVKRSD
1101: TSLEQTKGFC STLAGKSNVS DSFLGFKSIF SFL

Arabidopsis Description

RCKDNA helicase ROCK-N-ROLLERS [Source:UniProtKB/TrEMBL;Acc:A0A1I9LN50]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.