Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU85316 | Sorghum | nucleus | 90.02 | 89.88 |
| Os02t0617500-01 | Rice | cytosol | 41.38 | 85.87 |
| HORVU4Hr1G049830.57 | Barley | nucleus | 67.13 | 77.36 |
| TraesCS4D01G171000.1 | Wheat | nucleus | 71.08 | 74.78 |
| TraesCS4A01G136200.1 | Wheat | nucleus | 73.09 | 73.77 |
| TraesCS4B01G168700.1 | Wheat | nucleus | 72.85 | 73.54 |
| PGSC0003DMT400001251 | Potato | nucleus | 15.47 | 71.94 |
| GSMUA_Achr1P12000_001 | Banana | cytosol, nucleus, plastid | 51.82 | 60.69 |
| CDY49767 | Canola | nucleus | 49.88 | 57.03 |
| Bra033025.1-P | Field mustard | nucleus | 48.03 | 56.76 |
| CDY03992 | Canola | nucleus | 49.65 | 56.56 |
| KRH07179 | Soybean | endoplasmic reticulum, plastid | 51.04 | 55.46 |
| Solyc02g086580.2.1 | Tomato | cytosol | 51.04 | 54.82 |
| AT3G27730.2 | Thale cress | nucleus | 47.95 | 54.24 |
| VIT_14s0066g00880.t01 | Wine grape | nucleus | 53.05 | 53.8 |
| PGSC0003DMT400001255 | Potato | cytosol, mitochondrion | 23.9 | 41.98 |
| Zm00001d045590_P005 | Maize | cytosol, nucleus, plastid | 10.44 | 13.5 |
| Zm00001d008777_P008 | Maize | nucleus | 10.05 | 12.92 |
| Zm00001d017982_P001 | Maize | plastid | 10.67 | 11.74 |
| Zm00001d048095_P005 | Maize | mitochondrion | 18.1 | 11.23 |
| Zm00001d022286_P003 | Maize | plastid | 18.64 | 11.03 |
| Zm00001d023796_P033 | Maize | nucleus, plastid | 16.63 | 10.27 |
| Zm00001d015314_P003 | Maize | cytosol | 11.14 | 10.2 |
Protein Annotations
| Gene3D:1.10.10.2530 | Gene3D:1.10.150.20 | Gene3D:1.10.3380.10 | MapMan:13.3.6.5.1.1 | Gene3D:3.40.50.300 | UniProt:A0A1D6Q526 |
| ProteinID:AQK53647.1 | ProteinID:AQK53652.1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 |
| PFAM:PF02889 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF388 | SMART:SM00487 |
| SMART:SM00490 | SMART:SM00973 | SUPFAM:SSF158702 | SUPFAM:SSF52540 | InterPro:Sec63-dom | UniParc:UPI000843510C |
| EnsemblPlantsGene:Zm00001d051111 | EnsemblPlants:Zm00001d051111_P001 | EnsemblPlants:Zm00001d051111_T001 | SEG:seg | : | : |
Description
DExH-box ATP-dependent RNA helicase DExH17
Coordinates
chr4:+:143184893..143209413
Molecular Weight (calculated)
144498.0 Da
IEP (calculated)
8.440
GRAVY (calculated)
-0.274
Length
1293 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGSLADPYAL RCVSDLPPPF RSMFRFRYFN SLQSECFHVC FFSDVNMVIS APTGSGKTVL FELCILRLLS RFLSPDWRFN LNKGTLKTIY IAPSKALVQE
0101: KLRDWNMKLG PLGINCLEMT GDGEFCNTKA IHDADLILTT PEKFDSMSRH GIKSGRLGFF CDIALVLIDE VHLLNDPRGA ALEAVVSRIK MLSRHDNMKS
0201: FPLANVRLIA VSATIPNIED IAQWLLAPRE GIKRFGEEMR PVKLTTKVFG YAPAKNDFLF ERRLQSFIYD ILMQHSRGKS ALIFCSTRKG AQEAAQCLSQ
0301: TGASLGYSNP FMKSMQQYEH LKAASLTCSD KQLQACIIHG VGFHNGGLCL KDRGLVEGLF LKGDLQVLCT TNTLAHGVNL PAHTVVIKST QFFNKEKGLY
0401: VEYERSMVLQ MCGRAGRPPF DDTGTIIIMT RKETVHLYEN LLNGCEMVES QLLSCAVEHL NAEIVQLTVS DIILAVEWIK CSYLYIRIRK NPENYGVKRG
0501: TPQDLLEKQI QDICVDKIHE LVEYGLIWTD EGAFVLQPLE PGRLMAKFYL KFDTMKLIVK ASGYCSLEDL LHVICHSAEI TWIQLRRNDK KILNDINADK
0601: DGRLLFHIVM KNGKRKKRVQ TREEKIFLLA NDCLTGDSLI HDLSLNQETN AICSNGCRIA KCMREYFIYK KNYRSAINSM ILANSLHQKL WESSPFLLKQ
0701: LPGIGIVTAK ALKTAGVYSF ETLATADARK IELATGRNYP FGNHIKESMS SLPPKIDIHI EETGNRLGKS TITVTLTRLS QAVKSSKRNC ADMVVASEED
0801: NVILFHENIR THEFHSPYSV KVFVPCPQNA RVTLKVDLIF EEYVGLDVHK KHVVSREDGL YVTKEHGIDN LEPTYNIPSE ICLVSSRTTR TSRSQSHTEQ
0901: NPLSKEVYVI EDDGAAVSAV SALEKADDAV GTIKFNNLAS LEVPSFDLLP EEEYGAPGPA EAECKGATDS TIFDHIRKKS KDFPTLMLSK SMDCSYEPLI
1001: LKKMKISRDQ FGVKHGCLHA GEATTMDFDP VEPRVSPTNT AEKFRGILGR SSERSRMLFG KMDSPFEKSE MLGTTPAESS LRFAGGKDSS LEKNKTLIRT
1101: PAENSLQIAA RGKESKVSKV LTNLDKSPLG FAGGKESKMS NVPSTSAENS LQFAARRVRS SEKSKMLTTP YESSQAFLGE KDSPSEKSKI LINSPVEYPF
1201: KKGSPGENPF KTCSPVENSL KFAAQRDSPS EKRKSCISNP LPPFQQAVQC TKQVGVAGQP FDIKEYCKEI LRSRNDSQGG DPFAGYKSIF SFL
0101: KLRDWNMKLG PLGINCLEMT GDGEFCNTKA IHDADLILTT PEKFDSMSRH GIKSGRLGFF CDIALVLIDE VHLLNDPRGA ALEAVVSRIK MLSRHDNMKS
0201: FPLANVRLIA VSATIPNIED IAQWLLAPRE GIKRFGEEMR PVKLTTKVFG YAPAKNDFLF ERRLQSFIYD ILMQHSRGKS ALIFCSTRKG AQEAAQCLSQ
0301: TGASLGYSNP FMKSMQQYEH LKAASLTCSD KQLQACIIHG VGFHNGGLCL KDRGLVEGLF LKGDLQVLCT TNTLAHGVNL PAHTVVIKST QFFNKEKGLY
0401: VEYERSMVLQ MCGRAGRPPF DDTGTIIIMT RKETVHLYEN LLNGCEMVES QLLSCAVEHL NAEIVQLTVS DIILAVEWIK CSYLYIRIRK NPENYGVKRG
0501: TPQDLLEKQI QDICVDKIHE LVEYGLIWTD EGAFVLQPLE PGRLMAKFYL KFDTMKLIVK ASGYCSLEDL LHVICHSAEI TWIQLRRNDK KILNDINADK
0601: DGRLLFHIVM KNGKRKKRVQ TREEKIFLLA NDCLTGDSLI HDLSLNQETN AICSNGCRIA KCMREYFIYK KNYRSAINSM ILANSLHQKL WESSPFLLKQ
0701: LPGIGIVTAK ALKTAGVYSF ETLATADARK IELATGRNYP FGNHIKESMS SLPPKIDIHI EETGNRLGKS TITVTLTRLS QAVKSSKRNC ADMVVASEED
0801: NVILFHENIR THEFHSPYSV KVFVPCPQNA RVTLKVDLIF EEYVGLDVHK KHVVSREDGL YVTKEHGIDN LEPTYNIPSE ICLVSSRTTR TSRSQSHTEQ
0901: NPLSKEVYVI EDDGAAVSAV SALEKADDAV GTIKFNNLAS LEVPSFDLLP EEEYGAPGPA EAECKGATDS TIFDHIRKKS KDFPTLMLSK SMDCSYEPLI
1001: LKKMKISRDQ FGVKHGCLHA GEATTMDFDP VEPRVSPTNT AEKFRGILGR SSERSRMLFG KMDSPFEKSE MLGTTPAESS LRFAGGKDSS LEKNKTLIRT
1101: PAENSLQIAA RGKESKVSKV LTNLDKSPLG FAGGKESKMS NVPSTSAENS LQFAARRVRS SEKSKMLTTP YESSQAFLGE KDSPSEKSKI LINSPVEYPF
1201: KKGSPGENPF KTCSPVENSL KFAAQRDSPS EKRKSCISNP LPPFQQAVQC TKQVGVAGQP FDIKEYCKEI LRSRNDSQGG DPFAGYKSIF SFL
0001: MDTHTLKSVS DLPGNFRSAF SFRYFNSLQS ECFPLCFHSD INMIISAPTG SGKTVLFELC ILRLFSKSIS KEGSFLHAKG ALKTVYISPS KALVQEKLRD
0101: WNQKFNSWGI SCLELTGDNE TYSTKNIQDA DIILTTPEKF DAVSRYRVTS GGLGFFSDIA LVLIDEVHLL NDPRGAALEA IVSRLKILSS NHELRSSTLA
0201: SVRLLAVSAT IPNIEDLAEW LKVPTAGIKR FGEEMRPVKL TTKVFGYAAA KNDFLFEKRL QNYIYDILMQ YSKGKSALVF CSTRKGAQEA AQKLAQTAMT
0301: YGYSNPFIKS REQLERLREA SPMCSDKQMQ SYILQGVGYH NGGLCQKDRS LVEGLFLNGD IQVICTTNTL AHGINLPAHT VVIKSTQHFN KEKGHYMEYD
0401: RSTLLQMSGR AGRPPFDDTG MVIIMTRRET VHLYENLLNG CEVVESQLLP CLIEHLTAEI VQLTISDITR AIEWMKCSYL YVRMKKNPEN YAIKKGIPKD
0501: RVEKHLQELC LQKINELSQY QMIWTDTDGF VLKPEEPGRL MTKYYLKFET MKYIINTPTS YSLDEALHIV CHAEEISWIQ LRRNEKKTLN DVNADKEGRL
0601: RFHINDNKGK RKKRIQTREE KLFVLANDWL TGDPSVHDLS MTQDANSICS NGSRIARCMK EYFIYKKNYK GTLSSTLLAK SLYQKLWDDS PYLLKQLPGI
0701: GMVTAKALHS MGVRSFEALA EADPRRIEIV TGRKYPFGNT IKESLSSLPP KVEIKVEEVD CQKQGISKLA VTLSRVSQPL QSTKRHYADL IVGSEEENLI
0801: HFHEKIRMED FSSPYSVTVL LERPHQQTKV TVKADLIFEE YIGIDLHETL LLKKANNNKV NYKSENRMPQ YYPPMASACI ADDDNPVTSG PSNRKDKKDD
0901: MPSFKLIDDD SEEEKEPYVT MEEDDCVIIN EHTVFDHIRE KAKCFPSLNP LNPTSSPASG KSILKRKSLV ENNSPELDPL FQYDSVFDLP TNTKDIKQSA
1001: QQITSPGYAS FAEKTETERP FSDETIFNYI RKRSKNSPAL ATSKIENPIT ISSQEGRNAE ISPYRTYGLL VSPATKIPRI TSDAPSEILS FDISMVKRSD
1101: TSLEQTKGFC STLAGKSNVS DSFLGFKSIF SFL
0101: WNQKFNSWGI SCLELTGDNE TYSTKNIQDA DIILTTPEKF DAVSRYRVTS GGLGFFSDIA LVLIDEVHLL NDPRGAALEA IVSRLKILSS NHELRSSTLA
0201: SVRLLAVSAT IPNIEDLAEW LKVPTAGIKR FGEEMRPVKL TTKVFGYAAA KNDFLFEKRL QNYIYDILMQ YSKGKSALVF CSTRKGAQEA AQKLAQTAMT
0301: YGYSNPFIKS REQLERLREA SPMCSDKQMQ SYILQGVGYH NGGLCQKDRS LVEGLFLNGD IQVICTTNTL AHGINLPAHT VVIKSTQHFN KEKGHYMEYD
0401: RSTLLQMSGR AGRPPFDDTG MVIIMTRRET VHLYENLLNG CEVVESQLLP CLIEHLTAEI VQLTISDITR AIEWMKCSYL YVRMKKNPEN YAIKKGIPKD
0501: RVEKHLQELC LQKINELSQY QMIWTDTDGF VLKPEEPGRL MTKYYLKFET MKYIINTPTS YSLDEALHIV CHAEEISWIQ LRRNEKKTLN DVNADKEGRL
0601: RFHINDNKGK RKKRIQTREE KLFVLANDWL TGDPSVHDLS MTQDANSICS NGSRIARCMK EYFIYKKNYK GTLSSTLLAK SLYQKLWDDS PYLLKQLPGI
0701: GMVTAKALHS MGVRSFEALA EADPRRIEIV TGRKYPFGNT IKESLSSLPP KVEIKVEEVD CQKQGISKLA VTLSRVSQPL QSTKRHYADL IVGSEEENLI
0801: HFHEKIRMED FSSPYSVTVL LERPHQQTKV TVKADLIFEE YIGIDLHETL LLKKANNNKV NYKSENRMPQ YYPPMASACI ADDDNPVTSG PSNRKDKKDD
0901: MPSFKLIDDD SEEEKEPYVT MEEDDCVIIN EHTVFDHIRE KAKCFPSLNP LNPTSSPASG KSILKRKSLV ENNSPELDPL FQYDSVFDLP TNTKDIKQSA
1001: QQITSPGYAS FAEKTETERP FSDETIFNYI RKRSKNSPAL ATSKIENPIT ISSQEGRNAE ISPYRTYGLL VSPATKIPRI TSDAPSEILS FDISMVKRSD
1101: TSLEQTKGFC STLAGKSNVS DSFLGFKSIF SFL
Arabidopsis Description
RCKDNA helicase ROCK-N-ROLLERS [Source:UniProtKB/TrEMBL;Acc:A0A1I9LN50]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.