Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG29518 | Sorghum | cytosol | 90.79 | 93.51 |
| TraesCS6A01G133400.3 | Wheat | cytosol | 81.3 | 83.98 |
| TraesCS6B01G161800.5 | Wheat | nucleus | 81.23 | 83.84 |
| HORVU6Hr1G025670.1 | Barley | nucleus | 80.52 | 83.17 |
| PGSC0003DMT400053716 | Potato | cytosol, mitochondrion | 3.97 | 74.67 |
| VIT_06s0004g05970.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 53.82 | 69.53 |
| GSMUA_Achr9P03710_001 | Banana | cytosol | 64.94 | 69.52 |
| CDX99082 | Canola | cytosol | 55.38 | 65.44 |
| KRG98348 | Soybean | cytosol | 60.84 | 64.01 |
| Bra018181.1-P | Field mustard | nucleus | 60.27 | 63.46 |
| CDX86107 | Canola | nucleus | 60.13 | 63.12 |
| AT3G46960.1 | Thale cress | nucleus | 60.06 | 62.95 |
| Solyc06g005990.2.1 | Tomato | cytosol | 60.55 | 62.82 |
| Zm00001d008777_P008 | Maize | nucleus | 25.42 | 35.69 |
| Zm00001d045590_P005 | Maize | cytosol, nucleus, plastid | 24.79 | 35.0 |
| Zm00001d017982_P001 | Maize | plastid | 17.35 | 20.85 |
| Zm00001d051111_P001 | Maize | nucleus | 10.2 | 11.14 |
| Zm00001d022286_P003 | Maize | plastid | 15.58 | 10.07 |
| Zm00001d048095_P005 | Maize | mitochondrion | 14.38 | 9.74 |
| Zm00001d023796_P033 | Maize | nucleus, plastid | 13.31 | 8.98 |
Protein Annotations
| Gene3D:1.10.3380.30 | Gene3D:1.20.1500.20 | EntrezGene:100383871 | MapMan:16.8.1.2.6.1 | Gene3D:2.40.30.300 | Gene3D:3.40.50.300 |
| UniProt:A0A1D6H174 | ProteinID:AQK68648.1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003724 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0006139 |
| GO:GO:0006401 | GO:GO:0006810 | GO:GO:0006813 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016441 | GO:GO:0016787 | GO:GO:0035864 | GO:GO:0040029 | GO:GO:0055087 |
| GO:GO:0070478 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:P-loop_NTPase |
| PFAM:PF00270 | PFAM:PF08148 | PFAM:PF13234 | PIRSF:PIRSF005198 | PFscan:PS51192 | PFscan:PS51194 |
| PANTHER:PTHR12131 | PANTHER:PTHR12131:SF8 | SMART:SM00487 | SMART:SM00490 | SMART:SM01142 | SUPFAM:SSF52540 |
| InterPro:Ski2-like | InterPro:Ski2_C | UniParc:UPI000842D38E | EnsemblPlantsGene:Zm00001d015314 | EnsemblPlants:Zm00001d015314_P003 | EnsemblPlants:Zm00001d015314_T003 |
| InterPro:rRNA_proc-arch_dom | SEG:seg | : | : | : | : |
Description
DExH-box ATP-dependent RNA helicase DExH11
Coordinates
chr5:-:84263222..84281040
Molecular Weight (calculated)
158538.0 Da
IEP (calculated)
5.574
GRAVY (calculated)
-0.362
Length
1412 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSMDGPATSP ASEVPFRISF SGHSGHLRLD PTPHTPSPIP DFVLPPAYPA ESPSSVKEYL ERNYLDPELH LPTAADSGRV WDVDWFALAR PPLEPSAPRT
0101: MLAPVWVPPF RRGQEKLQSA AESRVWDPES VQMEMVDVFD SGTGGIAPRM PGPAKDFVRG SINNRPFRPG GLQDDAAEAA ALEKAFPEGA RTGDWVRELM
0201: SGGPAQVAPP GFRKGLELGQ LKGYESHWKC FRDGELVEEQ PASSSNDTME KYSVQFDDLF KIAWEEDTAN KLLKDGVVQQ SAEGEGINEI GEQKVDALQD
0301: EFESITTLDD EKQEVDVIRN VPETQTDLDQ MLSSEVQDTG REPGASGDKK PTQDGMVWAL VGGDEDIVTN FSKLVPDMAI EFPFELDKFQ KEAIYYLEKG
0401: ESVFVAAHTS AGKTVVAEYA FALATKHCTR SVYTAPIKTI SNQKYRDFSG KFDVGLLTGD VSIRPEATCL IMTTEILRSM LYRGADIIRD IEWVIFDEVH
0501: YVNDAERGVV WEEVIIMLPK HINIVLLSAT VPNTVEFADW IGRTKQKKIR VTSERYMEST LLEKYCLYHF GHHVFTRTNK RPVPLEHCLF YSGEVYKICE
0601: RDMFLAQGFK EAKDAFKKKN LNKFGVKPGS KSGTPAVRAG TQGKNPDTSN KGRDQKYPKH RNSNSGVATV QQSSSGPKRF ESLFWMPLVN NLLKKSLVPV
0701: VIFCFSKNRC DKSADSMFGT DLTSSSEKSE IRVFCDKAFS RLKGSDRNLP QVVGIQSLLR RGIGVHHAGL LPIVKEVVEM LFCRGVIKVL FSTETFAMGV
0801: NAPARTDYEA SSEPISVLTQ QVVFDSLRKF DGKEHRKLLP GEYIQMAGRA GRRGLDNIGT VIIMCRDEIP EESDLKNLIV GKPTRLESQF RLTYTMILHL
0901: LRVEELKVED MLKRSFAEFH AQKNLPEKEK LLLQMLRQPT RTIECIKGEP SIEEYYEMTL DAEAHREYIT EAIMQLPNSQ QFLTPGRLVV VKSDSDDDHL
1001: LGVILKNPSA LLKKYVVLVL TGDCSSSALA PEFNKNEKGP VDFQGGQFIV LKGKRGMDDE YFSSVSSRKA SGVININLPY KGDASGMGFE VRAIENKEII
1101: SICSSKIKID QVRLLEEPNK TAYSRTVQQL IKEQPDGTKY PPALDAIKDL KMKDMYLVES YRAYHILLQK MSENKCHGCI KLKEHISLMR EQKMYKDQLN
1201: ELKFQMSDEA LQQMPEFQGR IDVLKVIHYI DSDLVVQLKG RVACEMNSGE ELISTECLFE NQLDDLEPEE AVAIMSAFVF QQRNASEPSL TPKLAEAKKR
1301: LYDTAIKLGK LQSEFKVPVD PEEYARDNLK FGLVEVVYEW AKGTPFADIC ELTDVSEGII VRTIVRLDET CREFRNAASI MGNSALFKKM EVASNAIKRD
1401: IVFAASLYVT GI
0101: MLAPVWVPPF RRGQEKLQSA AESRVWDPES VQMEMVDVFD SGTGGIAPRM PGPAKDFVRG SINNRPFRPG GLQDDAAEAA ALEKAFPEGA RTGDWVRELM
0201: SGGPAQVAPP GFRKGLELGQ LKGYESHWKC FRDGELVEEQ PASSSNDTME KYSVQFDDLF KIAWEEDTAN KLLKDGVVQQ SAEGEGINEI GEQKVDALQD
0301: EFESITTLDD EKQEVDVIRN VPETQTDLDQ MLSSEVQDTG REPGASGDKK PTQDGMVWAL VGGDEDIVTN FSKLVPDMAI EFPFELDKFQ KEAIYYLEKG
0401: ESVFVAAHTS AGKTVVAEYA FALATKHCTR SVYTAPIKTI SNQKYRDFSG KFDVGLLTGD VSIRPEATCL IMTTEILRSM LYRGADIIRD IEWVIFDEVH
0501: YVNDAERGVV WEEVIIMLPK HINIVLLSAT VPNTVEFADW IGRTKQKKIR VTSERYMEST LLEKYCLYHF GHHVFTRTNK RPVPLEHCLF YSGEVYKICE
0601: RDMFLAQGFK EAKDAFKKKN LNKFGVKPGS KSGTPAVRAG TQGKNPDTSN KGRDQKYPKH RNSNSGVATV QQSSSGPKRF ESLFWMPLVN NLLKKSLVPV
0701: VIFCFSKNRC DKSADSMFGT DLTSSSEKSE IRVFCDKAFS RLKGSDRNLP QVVGIQSLLR RGIGVHHAGL LPIVKEVVEM LFCRGVIKVL FSTETFAMGV
0801: NAPARTDYEA SSEPISVLTQ QVVFDSLRKF DGKEHRKLLP GEYIQMAGRA GRRGLDNIGT VIIMCRDEIP EESDLKNLIV GKPTRLESQF RLTYTMILHL
0901: LRVEELKVED MLKRSFAEFH AQKNLPEKEK LLLQMLRQPT RTIECIKGEP SIEEYYEMTL DAEAHREYIT EAIMQLPNSQ QFLTPGRLVV VKSDSDDDHL
1001: LGVILKNPSA LLKKYVVLVL TGDCSSSALA PEFNKNEKGP VDFQGGQFIV LKGKRGMDDE YFSSVSSRKA SGVININLPY KGDASGMGFE VRAIENKEII
1101: SICSSKIKID QVRLLEEPNK TAYSRTVQQL IKEQPDGTKY PPALDAIKDL KMKDMYLVES YRAYHILLQK MSENKCHGCI KLKEHISLMR EQKMYKDQLN
1201: ELKFQMSDEA LQQMPEFQGR IDVLKVIHYI DSDLVVQLKG RVACEMNSGE ELISTECLFE NQLDDLEPEE AVAIMSAFVF QQRNASEPSL TPKLAEAKKR
1301: LYDTAIKLGK LQSEFKVPVD PEEYARDNLK FGLVEVVYEW AKGTPFADIC ELTDVSEGII VRTIVRLDET CREFRNAASI MGNSALFKKM EVASNAIKRD
1401: IVFAASLYVT GI
001: MGSVKRKSVE ESSDSAPPQK VQREDDSTQI INEELVGCVH DVSFPENYVP LAPSVHNKPP AKDFPFTLDS FQSEAIKCLD NGESVMVSAH TSAGKTVVAS
101: YAIAMSLKEN QRVIYTSPIK ALSNQKYRDF KEEFSDVGLM TGDVTIDPNA SCLVMTTEIL RSMQYKGSEI MREVAWIIFD EVHYMRDSER GVVWEESIVM
201: APKNSRFVFL SATVPNAKEF ADWVAKVHQQ PCHIVYTDYR PTPLQHYVFP AGGNGLYLVV DEKSKFHEDS FQKSLNALVP TNESDKKRDN GKFQKGLVIG
301: KLGEESDIFK LVKMIIQRQY DPVILFSFSK KECEALAMQM SKMVLNSDDE KDAVETIFAS AIDMLSDDDK KLPQVSNILP ILKRGIGVHH SGLLPILKEV
401: IEILFQEGLI KCLFATETFS IGLNMPAKTV VFTNVRKFDG DKFRWLSSGE YIQMSGRAGR RGIDKRGICI LMVDEKMEPA VAKSMLKGSA DSLNSAFHLS
501: YNMLLNQLRC EEGDPENLLR NSFFQFQADR AIPDLEKQIK SLEEERDSLV IEEEESLKNY YNLILQYKSL KKDIREIVFT PKYCLPFLLP NRAVCLDCTN
601: DDEEPQSFSI EDQDTWGVIM KFNKVKSLSE DDDSRRPEDA NYTVDVLTRC MVSKDGVGKK KVKAVPIKER GEPVVVTVPL SQIKSLSSAI MNIPKDLVPL
701: EARENALKKV SELLSRHPDG IPLDPEVDMK IKSSSYKKTV RRLEALENLF EKHKIAKSPL ITEKLKVLQM KEELIAKIKS LKKTVRSSTA LAFKDELKAR
801: KRVLRRLGYI TSDNVVELKG KVACEISSAE ELTLTELMFS GIFKDAKVEE LVSLLSCFVW RERLPDAAKP REELDLLFIQ LQDTARRVAE VQLDCKVEID
901: VESFVQSFRP DIMEAVYAWA KGSKFYEVME IARVFEGSLI RAIRRMEEVL QQLIVAAKSI GETQLEAKLE EAVSKIKRDI VFAASLYL
101: YAIAMSLKEN QRVIYTSPIK ALSNQKYRDF KEEFSDVGLM TGDVTIDPNA SCLVMTTEIL RSMQYKGSEI MREVAWIIFD EVHYMRDSER GVVWEESIVM
201: APKNSRFVFL SATVPNAKEF ADWVAKVHQQ PCHIVYTDYR PTPLQHYVFP AGGNGLYLVV DEKSKFHEDS FQKSLNALVP TNESDKKRDN GKFQKGLVIG
301: KLGEESDIFK LVKMIIQRQY DPVILFSFSK KECEALAMQM SKMVLNSDDE KDAVETIFAS AIDMLSDDDK KLPQVSNILP ILKRGIGVHH SGLLPILKEV
401: IEILFQEGLI KCLFATETFS IGLNMPAKTV VFTNVRKFDG DKFRWLSSGE YIQMSGRAGR RGIDKRGICI LMVDEKMEPA VAKSMLKGSA DSLNSAFHLS
501: YNMLLNQLRC EEGDPENLLR NSFFQFQADR AIPDLEKQIK SLEEERDSLV IEEEESLKNY YNLILQYKSL KKDIREIVFT PKYCLPFLLP NRAVCLDCTN
601: DDEEPQSFSI EDQDTWGVIM KFNKVKSLSE DDDSRRPEDA NYTVDVLTRC MVSKDGVGKK KVKAVPIKER GEPVVVTVPL SQIKSLSSAI MNIPKDLVPL
701: EARENALKKV SELLSRHPDG IPLDPEVDMK IKSSSYKKTV RRLEALENLF EKHKIAKSPL ITEKLKVLQM KEELIAKIKS LKKTVRSSTA LAFKDELKAR
801: KRVLRRLGYI TSDNVVELKG KVACEISSAE ELTLTELMFS GIFKDAKVEE LVSLLSCFVW RERLPDAAKP REELDLLFIQ LQDTARRVAE VQLDCKVEID
901: VESFVQSFRP DIMEAVYAWA KGSKFYEVME IARVFEGSLI RAIRRMEEVL QQLIVAAKSI GETQLEAKLE EAVSKIKRDI VFAASLYL
Arabidopsis Description
MTR4DExH-box ATP-dependent RNA helicase DExH9 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIF2]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.