Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400053716 | Potato | cytosol, mitochondrion | 4.4 | 77.33 |
| VIT_06s0004g05970.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 60.88 | 73.47 |
| KRG98348 | Soybean | cytosol | 70.51 | 69.3 |
| Solyc06g005990.2.1 | Tomato | cytosol | 70.51 | 68.33 |
| CDX99082 | Canola | cytosol | 60.88 | 67.2 |
| TraesCS6A01G133400.3 | Wheat | cytosol | 69.45 | 67.01 |
| TraesCS6B01G161800.5 | Wheat | nucleus | 69.14 | 66.67 |
| HORVU6Hr1G025670.1 | Barley | nucleus | 68.92 | 66.5 |
| KXG29518 | Sorghum | cytosol | 68.84 | 66.23 |
| AT3G46960.1 | Thale cress | nucleus | 67.55 | 66.15 |
| Bra018181.1-P | Field mustard | nucleus | 66.26 | 65.18 |
| CDX86107 | Canola | nucleus | 66.34 | 65.06 |
| Zm00001d015314_P003 | Maize | cytosol | 69.52 | 64.94 |
| GSMUA_Achr2P17890_001 | Banana | cytosol, nucleus, plastid | 25.78 | 33.6 |
| GSMUA_Achr3P05450_001 | Banana | nucleus | 24.94 | 30.46 |
| GSMUA_Achr8P22600_001 | Banana | plastid | 18.95 | 20.73 |
| GSMUA_Achr1P12000_001 | Banana | cytosol, nucleus, plastid | 11.3 | 13.5 |
| GSMUA_Achr3P29700_001 | Banana | cytosol | 14.4 | 10.33 |
| GSMUA_Achr8P28180_001 | Banana | cytosol | 14.18 | 9.32 |
| GSMUA_Achr11P... | Banana | nucleus | 13.19 | 8.52 |
Protein Annotations
| Gene3D:1.10.3380.30 | Gene3D:1.20.1500.20 | MapMan:16.8.1.2.3.1 | MapMan:16.8.1.2.6.1 | Gene3D:2.40.30.300 | Gene3D:3.40.50.300 |
| ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003724 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0006139 | GO:GO:0006401 | GO:GO:0006810 |
| GO:GO:0006813 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016441 |
| GO:GO:0016787 | GO:GO:0035864 | GO:GO:0040029 | GO:GO:0055087 | GO:GO:0070478 | EnsemblPlantsGene:GSMUA_Achr9G03710_001 |
| EnsemblPlants:GSMUA_Achr9P03710_001 | EnsemblPlants:GSMUA_Achr9T03710_001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| UniProt:M0TX80 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF08148 | PFAM:PF13234 |
| PIRSF:PIRSF005198 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR12131 | PANTHER:PTHR12131:SF8 | SMART:SM00487 |
| SMART:SM00490 | SMART:SM01142 | SUPFAM:SSF52540 | InterPro:Ski2-like | InterPro:Ski2_C | UniParc:UPI000295A4F9 |
| InterPro:rRNA_proc-arch_dom | SEG:seg | : | : | : | : |
Description
Putative Helicase SKI2W [Source:GMGC_GENE;Acc:GSMUA_Achr9G03710_001]
Coordinates
chr9:+:2543067..2563708
Molecular Weight (calculated)
147988.0 Da
IEP (calculated)
6.054
GRAVY (calculated)
-0.354
Length
1319 amino acids
Sequence
(BLAST)
(BLAST)
0001: MERVEATNEV AFRVGFTGYS GHLRLEPLPP VQRPTPLSSL PDFILPPAFP PETPESLKEY LEDNYLRPEL DPDEFSVENS GRFWDFDWFG RAKVPLEPSA
0101: PRSVVAPSWE LPFRRSKNTG PSGIWNPSSV EVDVAELMEG AQDSGSMPRM PGPAKDFVRG STNSRPFRPG GLDGSQALAR NPPEGALSGE WVRKVLDGGP
0201: AETVPPSFKK GLDLGDLKKY PCHWTCTDQK ISAAKKDLMD DDLNVYSVQF DDLFKKAWEE DIIEGSIGDG SVQNEDEKEE INIDPLPEAE ISSDNMILSE
0301: PGNMGDELPG QNIDSSKHQG EAWALVGGND EIVSHFYELV PDMAIDFPFE LDSFQKEAIY HLERGESVFV AAHTSAGKTV VAEYAFALAS KHCTRAVYTA
0401: PIKTISNQKY RDFCGKFDVG LLTGDVSLKP EASCLIMTTE ILRSMLYRGA DIIRDIEWVI FDEVHYVNDA ERGVVWEEVI IMLPRHVNII LLSATVPNTI
0501: EFADWIGRTK QKKIRVTGTT KRPVPLEHCL FHSGELYKIC ESDTFLPQGF RAVKDVYKRK KSSAGMGQSG TKVGKHSGHQ ITHSSYGTSG MNHSHSGLRR
0601: SESSLWLSLV NKLSKNSLLP VVIFCFSKNR VDKSADNMTG TDLTTSSEKS EIKVFCDKAF SRLKGSDRNL PQVVRVQNLL RRGIGVHHAG LLPIVKEVVE
0701: MLFCRGVIKV LFSTETFAMG VNAPARTVVF DTLRKFDGKD FRRLLPGEYI QMAGRAGRRG LDKIGTVIVM CRDEIPEESD LKQVMVGKPT RLESQFRLTY
0801: TMILHLLRVE ELKVEDMLKR SFAEFHAQKN LPEKERLLLQ KLRQSTKKIE CIKGEPAIEE YFEMASEAET HRQHILEAVL QSHTAQQFLS PGRVVVVKSQ
0901: SAEDHLLGTV LKTPSAANKQ YIILVLIADI ASQAPSMSSN KLQEEESQNF QQGYFITPKG KRSMDEEYFS SVSSRKGSGA INIKLPYYGS ASGTNYKVIA
1001: IDNKDIVSIC NCKIKIDQVR LLEDPSNIAY SKTVQQLLEK KHDGNKYPPA LDAVKDLKLR DMDLVQRYHS YNKLLQNMAE NKCHGCIKFN EHIMLIKEQN
1101: RHKEEVNALK YQMSDDALQQ MPDFQGRIDV LKEIYCIDSD LVVQLKGRVA CEMNSGEELI CTECLFENQL DDLEAEEAVA IMSSLVFQQK NTSEPSLTPK
1201: LAYAKKRLYD TAVRLGQLQS QFKLAIDPVE YARENLKFGL VEVVYEWAKG TPFADICELT DVPEGLIVRT IVRLDETCRE FKNAASIMGN SALYKKMETA
1301: SDAIKRDIVF AASLYVTGV
0101: PRSVVAPSWE LPFRRSKNTG PSGIWNPSSV EVDVAELMEG AQDSGSMPRM PGPAKDFVRG STNSRPFRPG GLDGSQALAR NPPEGALSGE WVRKVLDGGP
0201: AETVPPSFKK GLDLGDLKKY PCHWTCTDQK ISAAKKDLMD DDLNVYSVQF DDLFKKAWEE DIIEGSIGDG SVQNEDEKEE INIDPLPEAE ISSDNMILSE
0301: PGNMGDELPG QNIDSSKHQG EAWALVGGND EIVSHFYELV PDMAIDFPFE LDSFQKEAIY HLERGESVFV AAHTSAGKTV VAEYAFALAS KHCTRAVYTA
0401: PIKTISNQKY RDFCGKFDVG LLTGDVSLKP EASCLIMTTE ILRSMLYRGA DIIRDIEWVI FDEVHYVNDA ERGVVWEEVI IMLPRHVNII LLSATVPNTI
0501: EFADWIGRTK QKKIRVTGTT KRPVPLEHCL FHSGELYKIC ESDTFLPQGF RAVKDVYKRK KSSAGMGQSG TKVGKHSGHQ ITHSSYGTSG MNHSHSGLRR
0601: SESSLWLSLV NKLSKNSLLP VVIFCFSKNR VDKSADNMTG TDLTTSSEKS EIKVFCDKAF SRLKGSDRNL PQVVRVQNLL RRGIGVHHAG LLPIVKEVVE
0701: MLFCRGVIKV LFSTETFAMG VNAPARTVVF DTLRKFDGKD FRRLLPGEYI QMAGRAGRRG LDKIGTVIVM CRDEIPEESD LKQVMVGKPT RLESQFRLTY
0801: TMILHLLRVE ELKVEDMLKR SFAEFHAQKN LPEKERLLLQ KLRQSTKKIE CIKGEPAIEE YFEMASEAET HRQHILEAVL QSHTAQQFLS PGRVVVVKSQ
0901: SAEDHLLGTV LKTPSAANKQ YIILVLIADI ASQAPSMSSN KLQEEESQNF QQGYFITPKG KRSMDEEYFS SVSSRKGSGA INIKLPYYGS ASGTNYKVIA
1001: IDNKDIVSIC NCKIKIDQVR LLEDPSNIAY SKTVQQLLEK KHDGNKYPPA LDAVKDLKLR DMDLVQRYHS YNKLLQNMAE NKCHGCIKFN EHIMLIKEQN
1101: RHKEEVNALK YQMSDDALQQ MPDFQGRIDV LKEIYCIDSD LVVQLKGRVA CEMNSGEELI CTECLFENQL DDLEAEEAVA IMSSLVFQQK NTSEPSLTPK
1201: LAYAKKRLYD TAVRLGQLQS QFKLAIDPVE YARENLKFGL VEVVYEWAKG TPFADICELT DVPEGLIVRT IVRLDETCRE FKNAASIMGN SALYKKMETA
1301: SDAIKRDIVF AASLYVTGV
0001: MNKVEAGNEL GFRVGFSGHG GHLRVEPFYT AERDDALNSL PDFVSPPAFA KETKESIKKH IEEKYLIPRL EPDQFSAEKA ENQWDFDWFS RVKMPLQPSL
0101: PRSVVVPTWE LPFRRQKEDT ENGAWEPKSV EVDLSEQMYG DQDSGFFPRM VGPPKDFLRG SVNNRPFRPG GLEDSQSSER VLPEGVSSGQ WVQELLNGGP
0201: AQTVPPSFKQ SLDLGDLMPY PQTWSVYEDH SSHGNASDEN SSKLSIQFDD LFKKAWEEDT FSELEGDDHT AGSESPKAEA EPDAKASISN EVSKGLETDV
0301: TVLDEILSSA KTAIMSEEAV TGSSDKQLRK EGWATKGDSQ DIADRFYELV PDMAIEFPFE LDNFQKEAIC CLEKGESVFV AAHTSAGKTV VAEYAFALAT
0401: KHCTRAVYTA PIKTISNQKY RDFCGKFDVG LLTGDVSIRP EASCLIMTTE ILRSMLYRGA DIIRDIEWVI FDEVHYVNDV ERGVVWEEVI IMLPRHINFV
0501: LLSATVPNTF EFADWIGRTK QKEIRVTGTT KRPVPLEHCL FYSGELYKVC ENEVFLSKGI KDAKDSQKKK NSNAVSVAPK QQMGSSAHQD GSKSQKHEAH
0601: SRGKQNKHSS VKDVGKSSYS GNSQNNGAFR RSAASNWLLL INKLSKMSLL PVVVFCFSKN YCDRCADALT GTDLTSSSEK SEIRVFCDKA FSRLKGSDRN
0701: LPQVLRLQSL LHRGIGVHHA GLLPIVKEVV EMLFCRGVIK VLFSTETFAM GVNAPARTVV FDALRKFDGK EFRQLLPGEY TQMAGRAGRR GLDKTGTVVV
0801: MCRDEVPDES DLRRVIVGSA TRLESQFRLT YIMILHLLRV EELKVEDMLK RSFAEFHAQK KLPEKQQLLM IKRSLPTKHI ECIKGEPAIE DYYDMYMEAN
0901: EYNNKMSEAV MQSPYAQSFL VQGRVVVMKS GMGIDNLLGI VLKGPSNTNR QYVVLVIKSE IPPPEKNMVS IGKKSSDPSQ GYFIAPKSKR GFEEEFYTKP
1001: SSRKGPVVIK IELPYHGVAA GVGYEVKGFD NKEFLCICDS KIKIDQVRLL EDGNKAAFSQ TVQQLLDLKS DGNKFPPALD PVKDLKLKDA ELVETYYKWT
1101: NLLQKMSMNK CHGCVKLEEH MKLAREIKKH KTDLKDLEFQ MSDEALLQMP AFQGRIDVLK NIGCIDDDLV VQIKGRVACE MNSGEELICT VCLFENQFEE
1201: LEPEEAVAIM SAFVFQQKNT SAPTLTPKLA KAKQRLYDTA IRLGELQAQY NLQIDPEEYA QENLKFGLVE VVYEWAKGTP FAEICELTDV PEGLIVRTIV
1301: RLDETCREFK NAAAIMGNSA LHKKMDAASN AIKRDIVFAA SLYVTGV
0101: PRSVVVPTWE LPFRRQKEDT ENGAWEPKSV EVDLSEQMYG DQDSGFFPRM VGPPKDFLRG SVNNRPFRPG GLEDSQSSER VLPEGVSSGQ WVQELLNGGP
0201: AQTVPPSFKQ SLDLGDLMPY PQTWSVYEDH SSHGNASDEN SSKLSIQFDD LFKKAWEEDT FSELEGDDHT AGSESPKAEA EPDAKASISN EVSKGLETDV
0301: TVLDEILSSA KTAIMSEEAV TGSSDKQLRK EGWATKGDSQ DIADRFYELV PDMAIEFPFE LDNFQKEAIC CLEKGESVFV AAHTSAGKTV VAEYAFALAT
0401: KHCTRAVYTA PIKTISNQKY RDFCGKFDVG LLTGDVSIRP EASCLIMTTE ILRSMLYRGA DIIRDIEWVI FDEVHYVNDV ERGVVWEEVI IMLPRHINFV
0501: LLSATVPNTF EFADWIGRTK QKEIRVTGTT KRPVPLEHCL FYSGELYKVC ENEVFLSKGI KDAKDSQKKK NSNAVSVAPK QQMGSSAHQD GSKSQKHEAH
0601: SRGKQNKHSS VKDVGKSSYS GNSQNNGAFR RSAASNWLLL INKLSKMSLL PVVVFCFSKN YCDRCADALT GTDLTSSSEK SEIRVFCDKA FSRLKGSDRN
0701: LPQVLRLQSL LHRGIGVHHA GLLPIVKEVV EMLFCRGVIK VLFSTETFAM GVNAPARTVV FDALRKFDGK EFRQLLPGEY TQMAGRAGRR GLDKTGTVVV
0801: MCRDEVPDES DLRRVIVGSA TRLESQFRLT YIMILHLLRV EELKVEDMLK RSFAEFHAQK KLPEKQQLLM IKRSLPTKHI ECIKGEPAIE DYYDMYMEAN
0901: EYNNKMSEAV MQSPYAQSFL VQGRVVVMKS GMGIDNLLGI VLKGPSNTNR QYVVLVIKSE IPPPEKNMVS IGKKSSDPSQ GYFIAPKSKR GFEEEFYTKP
1001: SSRKGPVVIK IELPYHGVAA GVGYEVKGFD NKEFLCICDS KIKIDQVRLL EDGNKAAFSQ TVQQLLDLKS DGNKFPPALD PVKDLKLKDA ELVETYYKWT
1101: NLLQKMSMNK CHGCVKLEEH MKLAREIKKH KTDLKDLEFQ MSDEALLQMP AFQGRIDVLK NIGCIDDDLV VQIKGRVACE MNSGEELICT VCLFENQFEE
1201: LEPEEAVAIM SAFVFQQKNT SAPTLTPKLA KAKQRLYDTA IRLGELQAQY NLQIDPEEYA QENLKFGLVE VVYEWAKGTP FAEICELTDV PEGLIVRTIV
1301: RLDETCREFK NAAAIMGNSA LHKKMDAASN AIKRDIVFAA SLYVTGV
Arabidopsis Description
SKI2DExH-box ATP-dependent RNA helicase DExH11 [Source:UniProtKB/Swiss-Prot;Acc:F4JAA5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.