Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G133400.3 | Wheat | cytosol | 98.39 | 98.46 |
| HORVU6Hr1G025670.1 | Barley | nucleus | 96.56 | 96.64 |
| KXG29518 | Sorghum | cytosol | 83.55 | 83.37 |
| Zm00001d015314_P003 | Maize | cytosol | 83.84 | 81.23 |
| PGSC0003DMT400053716 | Potato | cytosol, mitochondrion | 4.02 | 73.33 |
| GSMUA_Achr9P03710_001 | Banana | cytosol | 66.67 | 69.14 |
| VIT_06s0004g05970.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 55.12 | 68.98 |
| KRG98348 | Soybean | cytosol | 63.16 | 64.38 |
| CDX99082 | Canola | cytosol | 56.14 | 64.27 |
| Bra018181.1-P | Field mustard | nucleus | 61.55 | 62.79 |
| AT3G46960.1 | Thale cress | nucleus | 61.62 | 62.58 |
| Solyc06g005990.2.1 | Tomato | cytosol | 62.06 | 62.38 |
| CDX86107 | Canola | nucleus | 61.18 | 62.23 |
| TraesCS2B01G179600.1 | Wheat | cytosol | 25.29 | 34.39 |
| TraesCS4B01G094600.1 | Wheat | nucleus | 25.22 | 31.48 |
| TraesCS6B01G342300.1 | Wheat | plastid | 18.06 | 20.55 |
| TraesCS6B01G147700.1 | Wheat | cytosol | 2.12 | 16.2 |
| TraesCS4B01G168700.1 | Wheat | nucleus | 11.77 | 12.57 |
| TraesCS6B01G034100.1 | Wheat | cytosol | 15.57 | 9.78 |
| TraesCS7B01G103700.1 | Wheat | cytosol | 14.99 | 9.46 |
| TraesCS4B01G247900.1 | Wheat | mitochondrion, peroxisome | 14.11 | 9.29 |
| TraesCS1B01G336400.1 | Wheat | plastid | 13.52 | 8.89 |
Protein Annotations
| Gene3D:1.10.3380.30 | Gene3D:1.20.1500.20 | MapMan:16.8.1.2.6.1 | Gene3D:2.40.30.300 | Gene3D:3.40.50.300 | ncoils:Coil |
| InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003724 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005773 | GO:GO:0006139 | GO:GO:0006401 | GO:GO:0006810 | GO:GO:0006813 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016441 | GO:GO:0016787 |
| GO:GO:0035864 | GO:GO:0040029 | GO:GO:0055087 | GO:GO:0070478 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF08148 |
| PFAM:PF13234 | PIRSF:PIRSF005198 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR12131 | PANTHER:PTHR12131:SF8 |
| SMART:SM00487 | SMART:SM00490 | SMART:SM01142 | SUPFAM:SSF52540 | InterPro:Ski2-like | InterPro:Ski2_C |
| EnsemblPlantsGene:TraesCS6B01G161800 | EnsemblPlants:TraesCS6B01G161800.5 | TIGR:cd00046 | TIGR:cd00079 | InterPro:rRNA_proc-arch_dom | SEG:seg |
Description
No Description!
Coordinates
chr6B:-:166120360..166135486
Molecular Weight (calculated)
153202.0 Da
IEP (calculated)
5.697
GRAVY (calculated)
-0.423
Length
1368 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDDLTPSPVS EVPFRISFSG HGGHLRLDPT PHTPNPVPDF VLPPAYPPES PSSVKEYLEA NYLNPELYVP TAANDGRVWD VDWFDLARPP LEPSAPRTML
0101: VPAWEPPFRR RSSSTSEQQV WDPETVQMEM SQVFDSGTGG MVPRMPGPAK DFVRGRVNSR PFRPGGLQDD AAEAAALEKA FPEGARNGDW VRELMSGGPA
0201: LNAPPGFPKG LDLGQLKEYN SHWKCFREGE HVEEQPASSS NDSTDKYSVQ FDDLFKIAWE EDDVNIVPHE DDGEQLAGDE GTNDVNERKV DKLQDASETL
0301: TMAETDKQEA NVRGDVSEAQ TDLDKMLSSE VKDARGETSG LVDDKPAQEG TDWALVVGDN SIVTNFHKLV PDMAIEYPFE LDKFQKEAIY YLEKGESVFV
0401: AAHTSAGKTV VAEYAFALAS KHCTRAVYTA PIKTISNQKY RDFCGKFDVG LLTGDVSIRP EATCLIMTTE ILRSMLYRGA DIIRDIEWVI FDEVHYVNDA
0501: ERGVVWEEVI IMLPKHINIV LLSATVPNTV EFADWIGRTK QKKIRVTSTN KRPVPLEHCL FYSGEVYKVC EKDIFLAQGF RDAKDAFKMK NANKFGAKPG
0601: TKSGTPAVRA GTQGRNPDTS SKGRDQKHPK HHQTNSGAAA IQQSTSGSRR SESSFWMPLI NNLLKKSLVP VVIFCFSKNR CDRSADSMFG ADLTSSSDKS
0701: EIRVFCDKAF SRLKGSDRNL PQVVGIQSLL RRGIGVHHAG LLPIVKEVVE MLFCRGVIKV LFSTETFAMG VNAPARTVVF DTLRKFDGKE HRRLLPGEYI
0801: QMAGRAGRRG LDTIGTVIMM CRDEIPEESD LKNLLVGKPT RLESQFRLTY TMILHLLRVE ELKVEDMLKR SFAEFHAQKD LPQKEKLLLQ MLRQPTKTIE
0901: CIKGEPSIEE YYDMFLEAEE HREFVTEAIM QLHTTQQFLA PGRLVVVKAK SDDDHLLGVI VKNPSATLKQ YVVLVLTGDC TSSALAPNLS SQNEKGPGDS
1001: QGYFIIPPKG KRGMDDDFFS SSRTRKSSGV INIKLPYTGD ASGMGFEVRA VENKEIISIC TSKIKIDQVG LLEDISKTAY AKTVQMLIKE QTDGKYPPAL
1101: DAIKDLKMKD MDQVKRYHAH NNLLEQMSKN KCHGCIKLKE HKSMMKDQKV HKDELDQLKY QMSDEALQQM PQFQGRIDVL KEIHYIDSDL VVQLKGRVAC
1201: EMNSGEELIS TECLFENQLD ELEPEEAVAI MSAFVFQQRN ASEPSLTPKL ADAKKRLYDT AINLGQLQKR HEVPVDPEEY ARDNLKFGLV EVVYEWAKGT
1301: PFADICELTD VSEGLIVRTI VRLDETCREF RNAASIMGNS ALYKKMEIAS NAIKRDIVFA ASLYVTGI
0101: VPAWEPPFRR RSSSTSEQQV WDPETVQMEM SQVFDSGTGG MVPRMPGPAK DFVRGRVNSR PFRPGGLQDD AAEAAALEKA FPEGARNGDW VRELMSGGPA
0201: LNAPPGFPKG LDLGQLKEYN SHWKCFREGE HVEEQPASSS NDSTDKYSVQ FDDLFKIAWE EDDVNIVPHE DDGEQLAGDE GTNDVNERKV DKLQDASETL
0301: TMAETDKQEA NVRGDVSEAQ TDLDKMLSSE VKDARGETSG LVDDKPAQEG TDWALVVGDN SIVTNFHKLV PDMAIEYPFE LDKFQKEAIY YLEKGESVFV
0401: AAHTSAGKTV VAEYAFALAS KHCTRAVYTA PIKTISNQKY RDFCGKFDVG LLTGDVSIRP EATCLIMTTE ILRSMLYRGA DIIRDIEWVI FDEVHYVNDA
0501: ERGVVWEEVI IMLPKHINIV LLSATVPNTV EFADWIGRTK QKKIRVTSTN KRPVPLEHCL FYSGEVYKVC EKDIFLAQGF RDAKDAFKMK NANKFGAKPG
0601: TKSGTPAVRA GTQGRNPDTS SKGRDQKHPK HHQTNSGAAA IQQSTSGSRR SESSFWMPLI NNLLKKSLVP VVIFCFSKNR CDRSADSMFG ADLTSSSDKS
0701: EIRVFCDKAF SRLKGSDRNL PQVVGIQSLL RRGIGVHHAG LLPIVKEVVE MLFCRGVIKV LFSTETFAMG VNAPARTVVF DTLRKFDGKE HRRLLPGEYI
0801: QMAGRAGRRG LDTIGTVIMM CRDEIPEESD LKNLLVGKPT RLESQFRLTY TMILHLLRVE ELKVEDMLKR SFAEFHAQKD LPQKEKLLLQ MLRQPTKTIE
0901: CIKGEPSIEE YYDMFLEAEE HREFVTEAIM QLHTTQQFLA PGRLVVVKAK SDDDHLLGVI VKNPSATLKQ YVVLVLTGDC TSSALAPNLS SQNEKGPGDS
1001: QGYFIIPPKG KRGMDDDFFS SSRTRKSSGV INIKLPYTGD ASGMGFEVRA VENKEIISIC TSKIKIDQVG LLEDISKTAY AKTVQMLIKE QTDGKYPPAL
1101: DAIKDLKMKD MDQVKRYHAH NNLLEQMSKN KCHGCIKLKE HKSMMKDQKV HKDELDQLKY QMSDEALQQM PQFQGRIDVL KEIHYIDSDL VVQLKGRVAC
1201: EMNSGEELIS TECLFENQLD ELEPEEAVAI MSAFVFQQRN ASEPSLTPKL ADAKKRLYDT AINLGQLQKR HEVPVDPEEY ARDNLKFGLV EVVYEWAKGT
1301: PFADICELTD VSEGLIVRTI VRLDETCREF RNAASIMGNS ALYKKMEIAS NAIKRDIVFA ASLYVTGI
0001: MNKVEAGNEL GFRVGFSGHG GHLRVEPFYT AERDDALNSL PDFVSPPAFA KETKESIKKH IEEKYLIPRL EPDQFSAEKA ENQWDFDWFS RVKMPLQPSL
0101: PRSVVVPTWE LPFRRQKEDT ENGAWEPKSV EVDLSEQMYG DQDSGFFPRM VGPPKDFLRG SVNNRPFRPG GLEDSQSSER VLPEGVSSGQ WVQELLNGGP
0201: AQTVPPSFKQ SLDLGDLMPY PQTWSVYEDH SSHGNASDEN SSKLSIQFDD LFKKAWEEDT FSELEGDDHT AGSESPKAEA EPDAKASISN EVSKGLETDV
0301: TVLDEILSSA KTAIMSEEAV TGSSDKQLRK EGWATKGDSQ DIADRFYELV PDMAIEFPFE LDNFQKEAIC CLEKGESVFV AAHTSAGKTV VAEYAFALAT
0401: KHCTRAVYTA PIKTISNQKY RDFCGKFDVG LLTGDVSIRP EASCLIMTTE ILRSMLYRGA DIIRDIEWVI FDEVHYVNDV ERGVVWEEVI IMLPRHINFV
0501: LLSATVPNTF EFADWIGRTK QKEIRVTGTT KRPVPLEHCL FYSGELYKVC ENEVFLSKGI KDAKDSQKKK NSNAVSVAPK QQMGSSAHQD GSKSQKHEAH
0601: SRGKQNKHSS VKDVGKSSYS GNSQNNGAFR RSAASNWLLL INKLSKMSLL PVVVFCFSKN YCDRCADALT GTDLTSSSEK SEIRVFCDKA FSRLKGSDRN
0701: LPQVLRLQSL LHRGIGVHHA GLLPIVKEVV EMLFCRGVIK VLFSTETFAM GVNAPARTVV FDALRKFDGK EFRQLLPGEY TQMAGRAGRR GLDKTGTVVV
0801: MCRDEVPDES DLRRVIVGSA TRLESQFRLT YIMILHLLRV EELKVEDMLK RSFAEFHAQK KLPEKQQLLM IKRSLPTKHI ECIKGEPAIE DYYDMYMEAN
0901: EYNNKMSEAV MQSPYAQSFL VQGRVVVMKS GMGIDNLLGI VLKGPSNTNR QYVVLVIKSE IPPPEKNMVS IGKKSSDPSQ GYFIAPKSKR GFEEEFYTKP
1001: SSRKGPVVIK IELPYHGVAA GVGYEVKGFD NKEFLCICDS KIKIDQVRLL EDGNKAAFSQ TVQQLLDLKS DGNKFPPALD PVKDLKLKDA ELVETYYKWT
1101: NLLQKMSMNK CHGCVKLEEH MKLAREIKKH KTDLKDLEFQ MSDEALLQMP AFQGRIDVLK NIGCIDDDLV VQIKGRVACE MNSGEELICT VCLFENQFEE
1201: LEPEEAVAIM SAFVFQQKNT SAPTLTPKLA KAKQRLYDTA IRLGELQAQY NLQIDPEEYA QENLKFGLVE VVYEWAKGTP FAEICELTDV PEGLIVRTIV
1301: RLDETCREFK NAAAIMGNSA LHKKMDAASN AIKRDIVFAA SLYVTGV
0101: PRSVVVPTWE LPFRRQKEDT ENGAWEPKSV EVDLSEQMYG DQDSGFFPRM VGPPKDFLRG SVNNRPFRPG GLEDSQSSER VLPEGVSSGQ WVQELLNGGP
0201: AQTVPPSFKQ SLDLGDLMPY PQTWSVYEDH SSHGNASDEN SSKLSIQFDD LFKKAWEEDT FSELEGDDHT AGSESPKAEA EPDAKASISN EVSKGLETDV
0301: TVLDEILSSA KTAIMSEEAV TGSSDKQLRK EGWATKGDSQ DIADRFYELV PDMAIEFPFE LDNFQKEAIC CLEKGESVFV AAHTSAGKTV VAEYAFALAT
0401: KHCTRAVYTA PIKTISNQKY RDFCGKFDVG LLTGDVSIRP EASCLIMTTE ILRSMLYRGA DIIRDIEWVI FDEVHYVNDV ERGVVWEEVI IMLPRHINFV
0501: LLSATVPNTF EFADWIGRTK QKEIRVTGTT KRPVPLEHCL FYSGELYKVC ENEVFLSKGI KDAKDSQKKK NSNAVSVAPK QQMGSSAHQD GSKSQKHEAH
0601: SRGKQNKHSS VKDVGKSSYS GNSQNNGAFR RSAASNWLLL INKLSKMSLL PVVVFCFSKN YCDRCADALT GTDLTSSSEK SEIRVFCDKA FSRLKGSDRN
0701: LPQVLRLQSL LHRGIGVHHA GLLPIVKEVV EMLFCRGVIK VLFSTETFAM GVNAPARTVV FDALRKFDGK EFRQLLPGEY TQMAGRAGRR GLDKTGTVVV
0801: MCRDEVPDES DLRRVIVGSA TRLESQFRLT YIMILHLLRV EELKVEDMLK RSFAEFHAQK KLPEKQQLLM IKRSLPTKHI ECIKGEPAIE DYYDMYMEAN
0901: EYNNKMSEAV MQSPYAQSFL VQGRVVVMKS GMGIDNLLGI VLKGPSNTNR QYVVLVIKSE IPPPEKNMVS IGKKSSDPSQ GYFIAPKSKR GFEEEFYTKP
1001: SSRKGPVVIK IELPYHGVAA GVGYEVKGFD NKEFLCICDS KIKIDQVRLL EDGNKAAFSQ TVQQLLDLKS DGNKFPPALD PVKDLKLKDA ELVETYYKWT
1101: NLLQKMSMNK CHGCVKLEEH MKLAREIKKH KTDLKDLEFQ MSDEALLQMP AFQGRIDVLK NIGCIDDDLV VQIKGRVACE MNSGEELICT VCLFENQFEE
1201: LEPEEAVAIM SAFVFQQKNT SAPTLTPKLA KAKQRLYDTA IRLGELQAQY NLQIDPEEYA QENLKFGLVE VVYEWAKGTP FAEICELTDV PEGLIVRTIV
1301: RLDETCREFK NAAAIMGNSA LHKKMDAASN AIKRDIVFAA SLYVTGV
Arabidopsis Description
SKI2DExH-box ATP-dependent RNA helicase DExH11 [Source:UniProtKB/Swiss-Prot;Acc:F4JAA5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.