Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 1
- mitochondrion 1
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 2
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G312100.1 | Wheat | plastid | 98.17 | 98.01 |
| TraesCS6D01G291500.1 | Wheat | plastid | 95.76 | 97.71 |
| HORVU6Hr1G076860.2 | Barley | plastid | 94.76 | 95.23 |
| Os02t0739000-01 | Rice | plastid, vacuole | 87.19 | 88.89 |
| Zm00001d017982_P001 | Maize | plastid | 83.69 | 85.62 |
| OQU85441 | Sorghum | plastid | 82.2 | 83.03 |
| VIT_01s0026g01000.t01 | Wine grape | cytosol | 61.98 | 70.02 |
| GSMUA_Achr8P22600_001 | Banana | plastid | 66.14 | 65.92 |
| Solyc05g006530.2.1 | Tomato | nucleus | 62.9 | 65.51 |
| PGSC0003DMT400058295 | Potato | plastid | 62.73 | 65.22 |
| KRH74713 | Soybean | nucleus | 61.9 | 64.03 |
| CDY38782 | Canola | plastid | 60.73 | 62.66 |
| Bra016240.1-P | Field mustard | plastid | 60.57 | 62.44 |
| CDY11624 | Canola | plastid | 59.48 | 62.07 |
| AT1G70070.1 | Thale cress | plastid | 59.73 | 61.32 |
| TraesCS2B01G179600.1 | Wheat | cytosol | 19.8 | 23.66 |
| TraesCS4B01G094600.1 | Wheat | nucleus | 19.72 | 21.62 |
| TraesCS6B01G161800.5 | Wheat | nucleus | 20.55 | 18.06 |
| TraesCS6B01G147700.1 | Wheat | cytosol | 2.08 | 13.97 |
| TraesCS4B01G168700.1 | Wheat | nucleus | 11.65 | 10.93 |
| TraesCS4B01G247900.1 | Wheat | mitochondrion, peroxisome | 14.56 | 8.42 |
| TraesCS1B01G336400.1 | Wheat | plastid | 13.89 | 8.02 |
| TraesCS6B01G034100.1 | Wheat | cytosol | 13.73 | 7.57 |
| TraesCS7B01G103700.1 | Wheat | cytosol | 12.9 | 7.15 |
Protein Annotations
| Gene3D:1.10.3380.30 | Gene3D:1.20.1500.20 | MapMan:16.12.2.1.1.3 | Gene3D:3.40.50.300 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom |
| GO:GO:0000003 | GO:GO:0000166 | GO:GO:0000373 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006139 | GO:GO:0006397 | GO:GO:0006810 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009570 | GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009793 |
| GO:GO:0009987 | GO:GO:0010494 | GO:GO:0010497 | GO:GO:0016441 | GO:GO:0040029 | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 |
| PFAM:PF08148 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF360 | SMART:SM00487 |
| SMART:SM00490 | SMART:SM01142 | SUPFAM:SSF52540 | SignalP:SignalP-noTM | InterPro:Ski2_C | TMHMM:TMhelix |
| EnsemblPlantsGene:TraesCS6B01G342300 | EnsemblPlants:TraesCS6B01G342300.1 | TIGR:cd00046 | TIGR:cd00079 | SEG:seg | : |
Description
No Description!
Coordinates
chr6B:-:602825895..602849396
Molecular Weight (calculated)
135863.0 Da
IEP (calculated)
5.480
GRAVY (calculated)
-0.362
Length
1202 amino acids
Sequence
(BLAST)
(BLAST)
0001: MHCLAPHFLL LLPLPVAPRH APPQTPPPTL LLPCRPAQAH AAPLHRPSAR SPSRAAAPVS DEDDDEEADE EEEEEDELDI RDADYDEDDD GDGDEELEEE
0101: SGGEDEEEGD AAAEDSRQET AERRQRSEQY KSKQVAKLVA EVREFGDDII DYNELAGIYD FPIDKFQRLA IQAFLRGSSV VVSAPTSSGK TLIAEAAAVA
0201: TVARGRRLFY TTPLKALSNQ KFREFRNTFG DHNVGLLTGD SAINKDAQIL IMTTEILRNM LYQSVGMSAS DGRLFEVDVI VLDEVHYLSD ISRGTVWEET
0301: VIYCPKEVQL ICLSATVANP DELAGWIGQI HGKTELVTSS KRPVPLTWHF SKKFALLPLL DGKGKKMNRK LRMSHVQNIS SPKSEFYYVK GKRKVRPNRN
0401: EQGNRSPLDI SKQVQLSKHE VTNMRRSQVP LIRETLSQLW ENNMLPAIWF IFSRRGCDAA VEYIEDCRLL HDCEASEVEL ELRRFRMQYP DAVRENAVKG
0501: LLRGVAAHHA GCLPLWKSFI EELFQRGLVK VVFATETLAA GINMPARTAV ISSLSKRIDA GRQLLTPNNL FQMAGRAGRR GIDTVGHSVL VQTTNEGPEE
0601: CCDVIFAGLE PLVSQFTASY GMVLNLLAGS KVTHKQKESG DVKGKRSGRT LEEARKLVEQ SFGNYVGSNV MVAAKEELER IQKEIQHLSS EITDEFIDRK
0701: CRKELSEEDY AEISLLQNKL KEEKKIRNEL KKRMELERMA AWKTQLEEFE SGHLPFMCLQ YKDKDSVHHT IPAVFIGSLN SFDDQKIASM LEDDSIGTGK
0801: QEVDSEGQLL CPSYYVALSS DNSWYLFTEK WIKTVYQTGL PAVPSVEGGP LPRETLKQLL LREDMIWDKI AKSEHGFLLC MDGSLDTWSW SLNVPVLNSL
0901: SEDDKVERFS QEHQTAVESH KQQRRKVSQL KKTIRSTKGF REFQKIIDMR NFTKEKIERL EARSRRLTRR IMQIEPTGWK EFLQISNVIQ EARVLDINTQ
1001: VIYPLGETAA AIRGENELWL AMVLRNKVLL DLKPSQLAAV CGSLVSEGIK LRPWKNSSFV YEPSSVVVGV INYLEEQRNS LLDLQEKHGV KVWHMMFLFS
1101: CVFKSIVALV TFLIYLLLGM QIPCEIDTQF AGMVEAWASG LTWREIMMDS AMDDGDLARL LRRTMDLLAQ IPKLPDIDPV LQKNAQIACS VMDRVPLSEL
1201: AG
0101: SGGEDEEEGD AAAEDSRQET AERRQRSEQY KSKQVAKLVA EVREFGDDII DYNELAGIYD FPIDKFQRLA IQAFLRGSSV VVSAPTSSGK TLIAEAAAVA
0201: TVARGRRLFY TTPLKALSNQ KFREFRNTFG DHNVGLLTGD SAINKDAQIL IMTTEILRNM LYQSVGMSAS DGRLFEVDVI VLDEVHYLSD ISRGTVWEET
0301: VIYCPKEVQL ICLSATVANP DELAGWIGQI HGKTELVTSS KRPVPLTWHF SKKFALLPLL DGKGKKMNRK LRMSHVQNIS SPKSEFYYVK GKRKVRPNRN
0401: EQGNRSPLDI SKQVQLSKHE VTNMRRSQVP LIRETLSQLW ENNMLPAIWF IFSRRGCDAA VEYIEDCRLL HDCEASEVEL ELRRFRMQYP DAVRENAVKG
0501: LLRGVAAHHA GCLPLWKSFI EELFQRGLVK VVFATETLAA GINMPARTAV ISSLSKRIDA GRQLLTPNNL FQMAGRAGRR GIDTVGHSVL VQTTNEGPEE
0601: CCDVIFAGLE PLVSQFTASY GMVLNLLAGS KVTHKQKESG DVKGKRSGRT LEEARKLVEQ SFGNYVGSNV MVAAKEELER IQKEIQHLSS EITDEFIDRK
0701: CRKELSEEDY AEISLLQNKL KEEKKIRNEL KKRMELERMA AWKTQLEEFE SGHLPFMCLQ YKDKDSVHHT IPAVFIGSLN SFDDQKIASM LEDDSIGTGK
0801: QEVDSEGQLL CPSYYVALSS DNSWYLFTEK WIKTVYQTGL PAVPSVEGGP LPRETLKQLL LREDMIWDKI AKSEHGFLLC MDGSLDTWSW SLNVPVLNSL
0901: SEDDKVERFS QEHQTAVESH KQQRRKVSQL KKTIRSTKGF REFQKIIDMR NFTKEKIERL EARSRRLTRR IMQIEPTGWK EFLQISNVIQ EARVLDINTQ
1001: VIYPLGETAA AIRGENELWL AMVLRNKVLL DLKPSQLAAV CGSLVSEGIK LRPWKNSSFV YEPSSVVVGV INYLEEQRNS LLDLQEKHGV KVWHMMFLFS
1101: CVFKSIVALV TFLIYLLLGM QIPCEIDTQF AGMVEAWASG LTWREIMMDS AMDDGDLARL LRRTMDLLAQ IPKLPDIDPV LQKNAQIACS VMDRVPLSEL
1201: AG
0001: MNTLPVVSLT ASSSFKFFHF PSLHRSLSHS PNFSFTKSLI LNPNHLSFKS TLNSLSPSQS QLYEEEDDEE EEEEDEDDDD EAADEYDNIS DEIRNSDDDD
0101: DDEETEFSVD LPTESARERV EFRWQRVEKL RSLVRDFGVE MIDIDELISI YDFRIDKFQR LAIEAFLRGS SVVVSAPTSS GKTLIAEAAA VSTVAKGRRL
0201: FYTTPLKALS NQKFREFRET FGDDNVGLLT GDSAINKDAQ IVIMTTEILR NMLYQSVGMA SSGTGLFHVD AIVLDEVHYL SDISRGTVWE EIVIYCPKEV
0301: QLICLSATVA NPDELAGWIG EIHGKTELVT STRRPVPLTW YFSTKHSLLP LLDEKGINVN RKLSLNYLQL SASEARFRDD DDGYRKRRSK KRGGDTSYNN
0401: LVNVTDYPLS KNEINKIRRS QVPQISDTLW HLQGKNMLPA IWFIFNRRGC DAAVQYVENF QLLDDCEKSE VELALKKFRV LYPDAVRESA EKGLLRGIAA
0501: HHAGCLPLWK SFIEELFQRG LVKVVFATET LAAGINMPAR TAVISSLSKK AGNERIELGP NELYQMAGRA GRRGIDEKGY TVLVQTAFEG AEECCKLVFA
0601: GVKPLVSQFT ASYGMVLNLV AGSKVTRKSS GTEAGKVLQA GRSLEEAKKL VEKSFGNYVS SNVTVAAKQE LAEIDNKIEI LSSEISDEAI DKKSRKLLSA
0701: RDYKEITVLK EELREEKRKR AEQRRRMELE RFLALKPLLK GMEEGNLPFI CLEFKDSEGR EQSVPAVYLG HIDSFQGSKL QKMMSLDESF ALNLIEDELA
0801: ADEPGKPNVK PSYYVALGSD NSWYLFTEKW VRTVYRTGFP NIALALGDAL PREIMKNLLD KADMQWDKLA ESELGSLWRL EGSLETWSWS LNVPVLSSLS
0901: DEDEVLHMSE EYDNAAQKYK EQRSKISRLK KKMSRSEGFR EYKKILENAN LTVEKMKRLK ARSRRLINRL EQIEPSGWKD FMRISNVIHE SRALDINTHL
1001: IFPLGETAAA IRGENELWLA MVLRNKALVD LKPPQLAGVC ASLVSEGIKV RPWRDNNYIY EPSDTVVDMV NFLEDQRSSL IKLQEKHEVM IPCCLDVQFS
1101: GMVEAWASGL SWKEMMMECA MDEGDLARLL RRTIDLLAQI PKLPDIDPVL QRSAAAAADI MDRPPISELA G
0101: DDEETEFSVD LPTESARERV EFRWQRVEKL RSLVRDFGVE MIDIDELISI YDFRIDKFQR LAIEAFLRGS SVVVSAPTSS GKTLIAEAAA VSTVAKGRRL
0201: FYTTPLKALS NQKFREFRET FGDDNVGLLT GDSAINKDAQ IVIMTTEILR NMLYQSVGMA SSGTGLFHVD AIVLDEVHYL SDISRGTVWE EIVIYCPKEV
0301: QLICLSATVA NPDELAGWIG EIHGKTELVT STRRPVPLTW YFSTKHSLLP LLDEKGINVN RKLSLNYLQL SASEARFRDD DDGYRKRRSK KRGGDTSYNN
0401: LVNVTDYPLS KNEINKIRRS QVPQISDTLW HLQGKNMLPA IWFIFNRRGC DAAVQYVENF QLLDDCEKSE VELALKKFRV LYPDAVRESA EKGLLRGIAA
0501: HHAGCLPLWK SFIEELFQRG LVKVVFATET LAAGINMPAR TAVISSLSKK AGNERIELGP NELYQMAGRA GRRGIDEKGY TVLVQTAFEG AEECCKLVFA
0601: GVKPLVSQFT ASYGMVLNLV AGSKVTRKSS GTEAGKVLQA GRSLEEAKKL VEKSFGNYVS SNVTVAAKQE LAEIDNKIEI LSSEISDEAI DKKSRKLLSA
0701: RDYKEITVLK EELREEKRKR AEQRRRMELE RFLALKPLLK GMEEGNLPFI CLEFKDSEGR EQSVPAVYLG HIDSFQGSKL QKMMSLDESF ALNLIEDELA
0801: ADEPGKPNVK PSYYVALGSD NSWYLFTEKW VRTVYRTGFP NIALALGDAL PREIMKNLLD KADMQWDKLA ESELGSLWRL EGSLETWSWS LNVPVLSSLS
0901: DEDEVLHMSE EYDNAAQKYK EQRSKISRLK KKMSRSEGFR EYKKILENAN LTVEKMKRLK ARSRRLINRL EQIEPSGWKD FMRISNVIHE SRALDINTHL
1001: IFPLGETAAA IRGENELWLA MVLRNKALVD LKPPQLAGVC ASLVSEGIKV RPWRDNNYIY EPSDTVVDMV NFLEDQRSSL IKLQEKHEVM IPCCLDVQFS
1101: GMVEAWASGL SWKEMMMECA MDEGDLARLL RRTIDLLAQI PKLPDIDPVL QRSAAAAADI MDRPPISELA G
Arabidopsis Description
ISE2DExH-box ATP-dependent RNA helicase DExH15 chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:B9DFG3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.