Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400058295 | Potato | plastid | 79.23 | 72.92 |
| Solyc05g006530.2.1 | Tomato | nucleus | 78.85 | 72.7 |
| KRH74713 | Soybean | nucleus | 78.38 | 71.77 |
| CDY38782 | Canola | plastid | 74.81 | 68.33 |
| Bra016240.1-P | Field mustard | plastid | 74.53 | 68.01 |
| CDY11624 | Canola | plastid | 73.31 | 67.71 |
| AT1G70070.1 | Thale cress | plastid | 73.97 | 67.21 |
| GSMUA_Achr8P22600_001 | Banana | plastid | 73.87 | 65.17 |
| Os02t0739000-01 | Rice | plastid, vacuole | 70.68 | 63.78 |
| Zm00001d017982_P001 | Maize | plastid | 70.3 | 63.66 |
| TraesCS6D01G291500.1 | Wheat | plastid | 70.11 | 63.33 |
| HORVU6Hr1G076860.2 | Barley | plastid | 70.11 | 62.37 |
| TraesCS6B01G342300.1 | Wheat | plastid | 70.02 | 61.98 |
| TraesCS6A01G312100.1 | Wheat | plastid | 70.11 | 61.96 |
| OQU85441 | Sorghum | plastid | 69.27 | 61.93 |
| VIT_06s0009g01750.t01 | Wine grape | cytosol | 22.65 | 24.17 |
| VIT_11s0065g00340.t01 | Wine grape | cytosol | 21.9 | 23.42 |
| VIT_06s0004g05970.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 23.68 | 23.06 |
| VIT_06s0004g05980.t01 | Wine grape | mitochondrion | 5.45 | 17.42 |
| VIT_14s0066g00880.t01 | Wine grape | nucleus | 14.0 | 11.69 |
| VIT_17s0000g07240.t01 | Wine grape | cytosol | 6.3 | 9.42 |
| VIT_05s0102g00480.t01 | Wine grape | cytosol | 14.76 | 7.6 |
| VIT_04s0008g03960.t01 | Wine grape | nucleus | 15.32 | 7.55 |
| VIT_17s0000g07230.t01 | Wine grape | cytosol | 9.3 | 7.23 |
Protein Annotations
| Gene3D:1.10.3380.30 | EntrezGene:100253458 | wikigene:100253458 | MapMan:16.12.2.1.1.3 | Gene3D:3.40.50.300 | ProteinID:CBI32069 |
| ProteinID:CBI32069.3 | ncoils:Coil | UniProt:D7TNJ6 | InterPro:DEAD/DEAH_box_helicase_dom | EMBL:FN596002 | GO:GO:0000003 |
| GO:GO:0000166 | GO:GO:0000373 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 |
| GO:GO:0004004 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005730 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006397 | GO:GO:0006810 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009570 |
| GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009793 | GO:GO:0009987 | GO:GO:0010494 | GO:GO:0010497 |
| GO:GO:0010501 | GO:GO:0016441 | GO:GO:0016787 | GO:GO:0040029 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR014001 | EntrezGene:LOC100253458 | wikigene:LOC100253458 | InterPro:P-loop_NTPase | PFAM:PF00270 |
| PFAM:PF00271 | PFAM:PF08148 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF360 |
| SMART:SM00487 | SMART:SM00490 | SMART:SM01142 | SUPFAM:SSF52540 | InterPro:Ski2_C | TIGR:TC66074 |
| UniParc:UPI00015CAF55 | ArrayExpress:VIT_01s0026g01000 | EnsemblPlantsGene:VIT_01s0026g01000 | EnsemblPlants:VIT_01s0026g01000.t01 | unigene:Vvi.2539 | RefSeq:XP_002267766 |
| RefSeq:XP_002267766.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr1:+:9933156..9946326
Molecular Weight (calculated)
119678.0 Da
IEP (calculated)
6.325
GRAVY (calculated)
-0.251
Length
1064 amino acids
Sequence
(BLAST)
(BLAST)
0001: MATSEAPASR SDEFKWQRVE KLCNEVREFG EELIDVEELA SIYDFRIDKF QRLAIQAFLR GSSVVVSAPT SSGKTLIAEA AAVATVSRGR RLFYTTPLKA
0101: LSNQKFREFR ETFGDNNVGL LTGDSAVNKD AQVLIMTTEI LRNMLYQSVG MVSSGSGLFH VDVIVLDEVH YLSDIYRGTV WEEIVIYCPK EVQLICLSAT
0201: VANPDELAGW ISQIHGKTEL VTSSKRPVPL TWHFSTKTSL LPLLDEKGKS MNRKLSLSYL QNYASGDNSY KDERSRRRNL KKRESDMSYS SFASIHGQSS
0301: LSKNDINTIR RSQVPQVMDT LWHLKARDML PAIWFIFSRK GCDASVQYLE DCNLLDESEM SEVDLALKRF RLQYPDAVRE SAVKGLLQGV AAHHAGCLPL
0401: WKSFIEELFQ RGLVKVVFAT ETLAAGINMP ARTAVISSLS KRGESGRIQL SSNELLQMAG RAGRRGIDES GHAVLVQTPY DGAEECCKLL FAGVEPLVSQ
0501: FTASYGMVLN LLAGAKVTRR LSESNDLKVL QAGRTLEEAR KLVEQSFGNY VGSNVMLAAK EELTKVEKEI EVLSSEVTDD AIDRKSRKLL SEMAYNEIAN
0601: LQEELRAEKR LRTELRRRME LRRMSALKLL LKESENGHLP FVCLQYKDSE DVQHLVPAVY LGKVDSFDGS KVKNMVYTND CFALNAVVTE LNVDDTDSQP
0701: NGKPSYYVAL GSDNSWYLFT EKWIKTVYRT GFPNVALAQG DALPREIMRA LLDKADIQWE ELAKSELGGL WCIEGSLETW SWSLNVPVLS SLSEDDEVLK
0801: MSQAYYEAVE CYKEQRNKVS RLKKKIARTE GFKEYKKIID MSKFTEEKIK RLKARSNRLS SRIEQIEPSG WKEFLQVSNV IHETRALDIN THIIFPLGET
0901: AAAIRGENEL WLAMVLRSKV LLGLKPAQLA AVCGSLVSEG IKVRPWKNNS YIYEASTTVI NVISLLDEQR NSLLQLQEKH DVQIPCCLDS QFSGMVEAWA
1001: SGLTWREIMM DCAMDEGDLA RLLRRTIDIL AQIPKLPDID PLLQSNAMTA SNVMDRPPIS ELAG
0101: LSNQKFREFR ETFGDNNVGL LTGDSAVNKD AQVLIMTTEI LRNMLYQSVG MVSSGSGLFH VDVIVLDEVH YLSDIYRGTV WEEIVIYCPK EVQLICLSAT
0201: VANPDELAGW ISQIHGKTEL VTSSKRPVPL TWHFSTKTSL LPLLDEKGKS MNRKLSLSYL QNYASGDNSY KDERSRRRNL KKRESDMSYS SFASIHGQSS
0301: LSKNDINTIR RSQVPQVMDT LWHLKARDML PAIWFIFSRK GCDASVQYLE DCNLLDESEM SEVDLALKRF RLQYPDAVRE SAVKGLLQGV AAHHAGCLPL
0401: WKSFIEELFQ RGLVKVVFAT ETLAAGINMP ARTAVISSLS KRGESGRIQL SSNELLQMAG RAGRRGIDES GHAVLVQTPY DGAEECCKLL FAGVEPLVSQ
0501: FTASYGMVLN LLAGAKVTRR LSESNDLKVL QAGRTLEEAR KLVEQSFGNY VGSNVMLAAK EELTKVEKEI EVLSSEVTDD AIDRKSRKLL SEMAYNEIAN
0601: LQEELRAEKR LRTELRRRME LRRMSALKLL LKESENGHLP FVCLQYKDSE DVQHLVPAVY LGKVDSFDGS KVKNMVYTND CFALNAVVTE LNVDDTDSQP
0701: NGKPSYYVAL GSDNSWYLFT EKWIKTVYRT GFPNVALAQG DALPREIMRA LLDKADIQWE ELAKSELGGL WCIEGSLETW SWSLNVPVLS SLSEDDEVLK
0801: MSQAYYEAVE CYKEQRNKVS RLKKKIARTE GFKEYKKIID MSKFTEEKIK RLKARSNRLS SRIEQIEPSG WKEFLQVSNV IHETRALDIN THIIFPLGET
0901: AAAIRGENEL WLAMVLRSKV LLGLKPAQLA AVCGSLVSEG IKVRPWKNNS YIYEASTTVI NVISLLDEQR NSLLQLQEKH DVQIPCCLDS QFSGMVEAWA
1001: SGLTWREIMM DCAMDEGDLA RLLRRTIDIL AQIPKLPDID PLLQSNAMTA SNVMDRPPIS ELAG
0001: MNTLPVVSLT ASSSFKFFHF PSLHRSLSHS PNFSFTKSLI LNPNHLSFKS TLNSLSPSQS QLYEEEDDEE EEEEDEDDDD EAADEYDNIS DEIRNSDDDD
0101: DDEETEFSVD LPTESARERV EFRWQRVEKL RSLVRDFGVE MIDIDELISI YDFRIDKFQR LAIEAFLRGS SVVVSAPTSS GKTLIAEAAA VSTVAKGRRL
0201: FYTTPLKALS NQKFREFRET FGDDNVGLLT GDSAINKDAQ IVIMTTEILR NMLYQSVGMA SSGTGLFHVD AIVLDEVHYL SDISRGTVWE EIVIYCPKEV
0301: QLICLSATVA NPDELAGWIG EIHGKTELVT STRRPVPLTW YFSTKHSLLP LLDEKGINVN RKLSLNYLQL SASEARFRDD DDGYRKRRSK KRGGDTSYNN
0401: LVNVTDYPLS KNEINKIRRS QVPQISDTLW HLQGKNMLPA IWFIFNRRGC DAAVQYVENF QLLDDCEKSE VELALKKFRV LYPDAVRESA EKGLLRGIAA
0501: HHAGCLPLWK SFIEELFQRG LVKVVFATET LAAGINMPAR TAVISSLSKK AGNERIELGP NELYQMAGRA GRRGIDEKGY TVLVQTAFEG AEECCKLVFA
0601: GVKPLVSQFT ASYGMVLNLV AGSKVTRKSS GTEAGKVLQA GRSLEEAKKL VEKSFGNYVS SNVTVAAKQE LAEIDNKIEI LSSEISDEAI DKKSRKLLSA
0701: RDYKEITVLK EELREEKRKR AEQRRRMELE RFLALKPLLK GMEEGNLPFI CLEFKDSEGR EQSVPAVYLG HIDSFQGSKL QKMMSLDESF ALNLIEDELA
0801: ADEPGKPNVK PSYYVALGSD NSWYLFTEKW VRTVYRTGFP NIALALGDAL PREIMKNLLD KADMQWDKLA ESELGSLWRL EGSLETWSWS LNVPVLSSLS
0901: DEDEVLHMSE EYDNAAQKYK EQRSKISRLK KKMSRSEGFR EYKKILENAN LTVEKMKRLK ARSRRLINRL EQIEPSGWKD FMRISNVIHE SRALDINTHL
1001: IFPLGETAAA IRGENELWLA MVLRNKALVD LKPPQLAGVC ASLVSEGIKV RPWRDNNYIY EPSDTVVDMV NFLEDQRSSL IKLQEKHEVM IPCCLDVQFS
1101: GMVEAWASGL SWKEMMMECA MDEGDLARLL RRTIDLLAQI PKLPDIDPVL QRSAAAAADI MDRPPISELA G
0101: DDEETEFSVD LPTESARERV EFRWQRVEKL RSLVRDFGVE MIDIDELISI YDFRIDKFQR LAIEAFLRGS SVVVSAPTSS GKTLIAEAAA VSTVAKGRRL
0201: FYTTPLKALS NQKFREFRET FGDDNVGLLT GDSAINKDAQ IVIMTTEILR NMLYQSVGMA SSGTGLFHVD AIVLDEVHYL SDISRGTVWE EIVIYCPKEV
0301: QLICLSATVA NPDELAGWIG EIHGKTELVT STRRPVPLTW YFSTKHSLLP LLDEKGINVN RKLSLNYLQL SASEARFRDD DDGYRKRRSK KRGGDTSYNN
0401: LVNVTDYPLS KNEINKIRRS QVPQISDTLW HLQGKNMLPA IWFIFNRRGC DAAVQYVENF QLLDDCEKSE VELALKKFRV LYPDAVRESA EKGLLRGIAA
0501: HHAGCLPLWK SFIEELFQRG LVKVVFATET LAAGINMPAR TAVISSLSKK AGNERIELGP NELYQMAGRA GRRGIDEKGY TVLVQTAFEG AEECCKLVFA
0601: GVKPLVSQFT ASYGMVLNLV AGSKVTRKSS GTEAGKVLQA GRSLEEAKKL VEKSFGNYVS SNVTVAAKQE LAEIDNKIEI LSSEISDEAI DKKSRKLLSA
0701: RDYKEITVLK EELREEKRKR AEQRRRMELE RFLALKPLLK GMEEGNLPFI CLEFKDSEGR EQSVPAVYLG HIDSFQGSKL QKMMSLDESF ALNLIEDELA
0801: ADEPGKPNVK PSYYVALGSD NSWYLFTEKW VRTVYRTGFP NIALALGDAL PREIMKNLLD KADMQWDKLA ESELGSLWRL EGSLETWSWS LNVPVLSSLS
0901: DEDEVLHMSE EYDNAAQKYK EQRSKISRLK KKMSRSEGFR EYKKILENAN LTVEKMKRLK ARSRRLINRL EQIEPSGWKD FMRISNVIHE SRALDINTHL
1001: IFPLGETAAA IRGENELWLA MVLRNKALVD LKPPQLAGVC ASLVSEGIKV RPWRDNNYIY EPSDTVVDMV NFLEDQRSSL IKLQEKHEVM IPCCLDVQFS
1101: GMVEAWASGL SWKEMMMECA MDEGDLARLL RRTIDLLAQI PKLPDIDPVL QRSAAAAADI MDRPPISELA G
Arabidopsis Description
ISE2DExH-box ATP-dependent RNA helicase DExH15 chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:B9DFG3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.